ID KC261954; SV 1; linear; genomic RNA; STD; VRL; 4786 BP. XX AC KC261954; XX DT 04-JUN-2013 (Rel. 117, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate TSWV-6 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RC Publication Status: Online-Only RP 1-4786 RX PUBMED; 23696821. RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.; RT "Phylogenetic and recombination analysis of tomato spotted wilt virus"; RL PLoS One 8(5):E63380(2013). XX RN [2] RP 1-4786 RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; bf51465d020fd8646e2267ffa691bc6d. XX CC GenBank Accession Numbers KC261953-KC261955 represent sequences CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-6. CC CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4786 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="Stellaria media" FT /isolate="TSWV-6" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="Dec-2009" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:R9RW89" FT /protein_id="AGM53746.1" FT /translation="MLTFFSNKGSSKSAGKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMSSEKQV FT ILKGQGTITDPICFVFYLNWSIPKINNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCVVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT gene complement(1295..4702) FT /gene="Gn-Gc" FT CDS complement(1295..4702) FT /codon_start=1 FT /gene="Gn-Gc" FT /product="glycoprotein precursor" FT /db_xref="GOA:R9RUX3" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:R9RUX3" FT /protein_id="AGM53747.1" FT /translation="MRFLKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHL FT EVYDDSAENEVLTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECAKICICNKSKA FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDTIIESIFGTNIVIEG FT PNDCIENQNCVAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNSTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGAIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDGHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKIAPKRPSITSTKL FT NCNGCLLCGQGLSCILEFFSDLTFSTSISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVPVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIAFIFLAIYFCSILTTICKGYVKNESYKSRSKIEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4786 BP; 1557 A; 850 C; 839 G; 1540 T; 0 other; agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactt ttttcagtaa 120 taaggggtct tctaagtctg ccggaaagga tgaaggtcct ttagtttcac tagctaaaca 180 taatggtaat gttgaagtct caaaaccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcagaac gctaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tctaggattg tgatatgggt ctgccccact ataccaaacc ctacaggaaa 540 acttgtggtt gccctagtcg atcccaacat gtcatctgaa aagcaagtca ttctgaaggg 600 tcaggggaca ataactgatc ccatatgttt tgtcttttat ctgaactggt ctattccaaa 660 aataaacaac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtgtcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagacaaaa gttgtgtggt tatacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaaggaaata gtgaaaagca 900 gattaaaaaa cagcttaaag agttgagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagc acttttaata 1020 ccacttattt aagcttaaat ttctgttaat tttgcatttt taaatcaaaa aacaaaacaa 1080 aaacaaaaaa caaaaaaaga aaaaacaaaa aacaaaaaaa tcaaaaaaag aaaaaacaaa 1140 aacaaataag gctgaaaagc caaactttgg tccgaagact ctttttgttg ttttttgttt 1200 atttgtattt tttgtttgtt ttttgtttat tttatatata cataatctga ctaatgtaga 1260 gaattgaatc aaatttagcc tgtgacaagc agcctcagac aaggtgagag aaatccatag 1320 gtggccttcg tcttgtcatt gtatctttca ttaacatagg ggctttgatc tcagaatcat 1380 catcatcctc tatcttggat ctagatttat aagattcatt cttgacatat cctttacaaa 1440 tggttgttag aatagaacag aaataaatcg caaggaaaat gaatgcaata agcaatatca 1500 ctctgatagt atcaaaaaac gagccaaaat aacttgcaat gaaattgaat gggctcttaa 1560 tataatccca gaagccccat gcggaagaat cagaattata ttgttgttcc tcatgagcat 1620 actcatcatt ttgatctatt atgttctctg gttcttctac aacaacattg ttgaccggaa 1680 cctccacaga aatatctgga ttgccttctg gatacaacgt cattttcttc ttgtccggat 1740 tagcagaaca aaacattgtt atgttgtatt tatttgatcc ttttttaaca gccagttgat 1800 aagtagatag agagcaagca tctatagaaa ttgaagtaga aaatgtcaaa tccgagaaaa 1860 attctaaaat gcaagataaa ccttgaccgc atagaagaca gccgttgcaa tttaattttg 1920 ttgaagttat ggaaggtctc ttaggagcaa ttttaaaaag atcagatgga agatcaacga 1980 caatcttgag tttgcctaaa ctgaaagctt tttccaagaa aaaactagag aaatccttga 2040 aactaacagg aatatctgat atttgctcta aaccagatct aaatctgtat gtatcatatc 2100 cgcatgtttt aatagtgatt gattttttcc ctattgctgc acaatcccaa gacatgtcat 2160 ctccttctag agttttctta gtaaaaatag gcactccatc atgagtcaat tgtgggtgac 2220 caaacatttt gacaggatca ttcaagtttg caatatttcc agaataaata tggccgtcag 2280 gtccatgagc tatcagttca cctatagtga taccatcatt gtgcaaatct gcttgtatat 2340 cagcttgaaa caaagcattt tcataaggaa cctcttcagt gatccttgag cactgacctc 2400 ctaaaatacc agaaatacaa acatctgcca ctatggttga ttttagcact gaataaattc 2460 tgtatgattt atccatgtca tagatattcc gacagaatcc acatgtagca ccttcattaa 2520 ttgcaaaaca ccaagcttct tcacatcccc aataagaagt tggtgttata caaaaatctt 2580 ggaaacctgt taaagcttga ttttttctgc aagtgtcaca gtttcctgtg caagttgaat 2640 aaaaatctgt gtgagtgctt tggataggag ctgttgtgta tttttctgac acttcataat 2700 gaattcccac acttttgata taaatcacaa attttttggc tgtttccgag gttttatcat 2760 tcaacatgaa tatagcccct cctcctccta aaagagattg ttctatcatg tatctatatt 2820 tcccatctac aacagaatca aagatcaatg attgtctagg cagaatgttc tctggtatgc 2880 ttgtttcatt tttgtttaga gagtctcctg caatcattcc agaaattttg tctgtactat 2940 tataagaatc tattatacca ttcctcaatc tcttagcttc atacagacca accgatgtca 3000 accctaaaga gcttcctgta taatccgaaa atccgttata caaaggtttg tttctaaata 3060 aatctaggta ttcgcaaccc aatctgcatt ttataagatt atcaatagat gggtgtgcaa 3120 cgcaattctg gttctctatg caatcattag gaccttctat aacaatgtta gtgccaaaga 3180 tactttctat aatcgtatct tcttttacat tacagtaaca ttgatctttt tcagggcatt 3240 tctcaaattt gcttgtaacc aaaaacggac agcctggaac ataaaaacat ccacttaaac 3300 attgggtagt ttgagccata gacatgggca tttgagacaa aatgaccaaa cctattaaga 3360 tttcagtcac aaatttcagc aaactgaagc taagcttagt gttcactatt agatggaacc 3420 attccatgct agtccactta tgtttgttgt agtcatgatc tgtttcttta gacaatatgg 3480 gacactctga agaatgttct tttgaagctt tgcttttgtt gcagatgcaa attttagcac 3540 attcatgtgt gattatgcac aaattgccac agttagaaca tttaaatgga aaatatttcc 3600 ataagcaatt tatgagcaac aaaatagggt atgtgatcaa gcctataaga tcataccaga 3660 gaaaaagggg tttggttgtc ttgtttacta accaccggat agggaaatag atcaacaaag 3720 ctatcaatat taatcttatc caagaaaaat tgatgcaggc tgtttgttta taaatgcttt 3780 ttgaatattt gattatgcaa tctctaactc ttttgtttgt ttttggtatt ttagctgatt 3840 tgtcaccgca caagagattg tgctcaccat ccaacatttc ctcagtaaaa gtgatgcttg 3900 ctgatccaga aaaagatatg accttgtgtt ccacattttc accaggcttt tttatcaaat 3960 aacccatgat cttctcaggg ctagtgatgc taacagtata gggattagca aagtttgatt 4020 tagttatttt gcagtcgcca gataacttca cagtttgtaa tgatactgtt ccattagtag 4080 ggtacgagtt ataagttata ggataattat cttgtgtcag gctttctgaa atgaagaatt 4140 ttgtcccaac tgaaaaatgc cttttgttgt caagtttggt aataggaata accgggactt 4200 tagagaatct ttttggcaga tttaaagaat tgtcacattt ttctaaacct tctgctgaat 4260 cagaaacaca ggaatatatg acaccattat tttccacttg ataataaaca ttataagtgg 4320 atatcccttt tatctcacat tttaatgaag aagcattcaa gcagttgttg ggaagatccg 4380 agacagagat tgttttttgc gtagttgatt cagcaaaaat agggatggtt gattcttctt 4440 ctcgtatctg gcgggttcca ggagtctgag attctagcat cagattagtt aaagtctcca 4500 agatagcctt gcgttgaatt gatgcagcag tgagtacttc attctcagca gaatcatcat 4560 aaacctcaag atggtctcca cgaattattt ctactttggc atctgtggct ctgaagatca 4620 agaatgccaa caagacagaa ctcagggcaa ttgtgaaaag actcactttt accactagtt 4680 ctagtagttt taaaaatctc atcctagacg tctgctcaga ttataatggt tatatgatta 4740 atttcaagat gtctggatta aggtttttgt ttgcactgat tgctct 4786 //