ID KC261951; SV 1; linear; genomic RNA; STD; VRL; 4792 BP. XX AC KC261951; XX DT 04-JUN-2013 (Rel. 117, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate TSWV-5 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RC Publication Status: Online-Only RP 1-4792 RX PUBMED; 23696821. RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.; RT "Phylogenetic and recombination analysis of tomato spotted wilt virus"; RL PLoS One 8(5):E63380(2013). XX RN [2] RP 1-4792 RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; 94c34610152e54087bef5ec9abc67527. XX CC GenBank Accession Numbers KC261950-KC261952 represent sequences CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-5. CC CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4792 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="Stellaria aquatica" FT /isolate="TSWV-5" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="Dec-2009" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:R9RWA2" FT /protein_id="AGM53751.1" FT /translation="MLTFFSNKGSSKSARKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMSSEKQV FT ILKGQGTITDPICFVFYLNWSIPKINNTPENCCQLHLMCSQEYKKGVSFGSVLYSWTKE FT FCDSPRADKDKSCVVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT gene complement(1301..4708) FT /gene="Gn-Gc" FT CDS complement(1301..4708) FT /codon_start=1 FT /gene="Gn-Gc" FT /product="glycoprotein precursor" FT /db_xref="GOA:R9RUY0" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:R9RUY0" FT /protein_id="AGM53752.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EVYDDSAENEVPTAASVQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDTIMESIFGTNIVIEG FT PNDCIENQDCVAHPSIDNLIKCRLGCKYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNSTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLRGGGAIFMLNDKTSEIAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDGHI FT YSGNIANLNDPVKMFGHPQLAHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKIAPKRPSITSTRL FT NCNGCLLCGQGLSCILEFFSDLTFSTSISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIASIFLAIYFCSVLTTICKGYVKNESYKSRSKIEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4792 BP; 1551 A; 849 C; 842 G; 1550 T; 0 other; agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactt ttttcagtaa 120 taaggggtct tctaagtctg ccagaaagga tgaaggtcct ttagtttcac tagctaaaca 180 taatggtaat gttgaagtct caaaaccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcagaac gctaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tctaggattg tgatatgggt ctgtcccact ataccaaacc ctacaggaaa 540 acttgtggtt gccctagtcg atcccaacat gtcatctgaa aagcaagtca ttctgaaggg 600 tcaggggaca ataactgatc ccatatgttt tgtcttttat ctgaactggt ctattccaaa 660 aataaacaac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtgtcttgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagacaaaa gttgtgtggt tatacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaaggaaata gtgaaaagca 900 gattaaaaaa cagcttaaag agttgagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt acttttaata 1020 ccacttattt aagcttaaat ttctgttaat tttgcatttt taaatcaaaa aacaaaacaa 1080 aaacaaaaaa caaaaaagaa aaacaaaaaa caaaaaaatc aaaaaaagaa aaaacaaaaa 1140 caaaataagg ctgaaaagcc aaactttggt ccgaagactc tctttttttt gttgtttttt 1200 gtttatttgt attttttgtt tgtttttttt gtttatttta tatatacata atctgactaa 1260 tgtagagaat tgaatcaaat ctagcctgtg acaagcagcc tcagacaagg tgagagaaat 1320 ccataggtgg ccttcgtctt gtcattgtat ctttcattaa cataggggct ttgatctcag 1380 aatcatcatc atcctctatc ttggatctag atttataaga ttcattcttg acatatcctt 1440 tacaaatggt tgttagaaca gaacagaaat aaatcgcaag gaaaatggat gcaataagca 1500 atatcactct aatagtatca aaaaacgagc caaaataact tgcaatgaaa ttgaatgggc 1560 tcttaatata atcccagaag ccccatgctg aagaatcaga attatattgt tgttcctcat 1620 gagcatactc atcattttga tctattatgt tctctggttc ttctacaaca acattgttga 1680 ccagaacctc cacagaaata tctggattgc cttctggata caacgtcatt ttcttcttgt 1740 ccggattagc agaacaaaac attgttatgt tgtatttatt tgatcctttt ttaacagcca 1800 gctgataagt agatagagag caagcatcta tagaaattga agtagaaaat gtcaaatccg 1860 agaaaaattc taaaatgcaa gataaacctt gaccgcatag aagacagccg ttgcaattta 1920 atcttgttga agttatggaa ggtctcttag gagcaatttt aaaaagatca gatggaagat 1980 caacgacgat cttgagtttg cctaaactga aagctttttc caagaaaaaa ctagagaaat 2040 ccttgaaact aacaggaata tctgatattt gctctaaacc agatctaaat ctgtatgtat 2100 catatccgca tgttttaata gtgattgatt ttttccctat tgctgcacaa tcccaagaca 2160 tgtcatctcc ttctagagtt ttcttagtaa aaataggcac tccatcatga gccaattgtg 2220 ggtgaccaaa cattttgaca ggatcattca agtttgcaat atttccagaa taaatatggc 2280 cgtcaggtcc atgagctatc agttcaccta tagtgatacc atcattgtgc aaatctgctt 2340 gtatatcagc ttgaaacaag gcattttcat aaggaacctc ttcagtgatc cttgagcact 2400 gacctcctaa aataccagaa atacaaacat ctgccactat ggttgatttt agcactgaat 2460 aaattctgta tgatttatcc atgtcataga tattccgaca gaatccacat gtagcacctt 2520 cattaattgc aaaacaccaa gcttcttcac atccccaata agaagttggt gttatacaaa 2580 aatcttggaa acctgttaaa gcttgatttt ttctgcaagt gtcacagttt cctgtgcaag 2640 ttgaataaaa atctgtgtga gtgctttgga taggagctgt tgtgtatttt tctgacactt 2700 cataatgaat tcccacactt ttgatataaa tcacaaattt tttggctatt tccgaggttt 2760 tatcattcaa catgaatata gcccctcctc ctcttaaaag agattgttct atcatgtatc 2820 tatatttccc atctacaaca gaatcaaaga tcaatgattg tctaggcaga atgttctctg 2880 gtatgcttgt ttcatttttg tttagagagt ctcctgcaat cattccagaa attttgtctg 2940 tactattata agaatctatt ataccattcc tcaatctctt agcttcatac agaccaaccg 3000 acgtcaaccc taaagagctt cctgtataat ctgaaaatcc gttatacaaa ggtttgtttc 3060 taaataaatc taggtatttg caacctaatc tgcattttat aagattatca atagatgggt 3120 gtgcaacgca atcctggttc tctatgcaat cattaggacc ttctataaca atgttagtgc 3180 caaagatact ttccataatc gtatcttctt ttacattaca gtaacattga tctttttcag 3240 ggcatttttc aaatttgctt gtaaccaaaa aaggacagcc tggaacataa aaacatccac 3300 ttaaacattg ggtagtttga gccatagaca tgggcatttg agacaaaatg accaaaccta 3360 ttaagatttc agtcacaaat ttcagcaaac tgaagctaag cttagtgttc actattagat 3420 ggaaccattc catgctagtc cacttatgtt tgttgtagtc atgatctgtt tctttggaca 3480 atatgggaca ctctgaagag tgttcttttg aggctttgct tttgttgcag atgcaaattt 3540 tagtacattc atgtgtgatt atgcacaaat tgccacagtt agaacattta aatggaaaat 3600 atttccataa gcaatttatg agcaacaaaa tagggtatgt gatcaagcct ataagatcat 3660 accagagaaa aaggggtttg gttgtcttgt ttactaacca ccggataggg aaatagatca 3720 acaaagctat caatattaat cttatccaag aaaaattgat gcaggctgtt tgtttataaa 3780 tgctttttga atatttgatt atgcaatctc taactctttt gtttgttttt ggtattttag 3840 ctgatttgtc accgcacaag agattgtgct caccatccaa catttcctca gtaaaagtga 3900 tgcttgctga tccagaaaaa gatatgacct tgtgttccac attttcacca ggctttttta 3960 tcaaataacc catgatcttc tcagggctag tgatgctaac agtataggga ttagcaaagt 4020 ttgatttagt tattttgcag tcgccagata acttcacagt ttgtaatgat actgttccat 4080 tagtagggta cgagttataa gttataggat aattatcttg tgtcaggctt tctgaaatga 4140 agaattttgt cccaactgaa aaatgccttt tgttgtcaag tttggtaatg ggaataactg 4200 ggactttaga gaatcttttt ggcagattta aagaattgtc acatttttct aaaccttctg 4260 ctgaatcaga aacacaggaa tatatgacac cattattttc cacttgataa taaacattat 4320 aagtggatat cccttttatc tcacatttta atgaagaagc attcaaacag ttgttgggaa 4380 gatctgagac agagattgtt ttttgcgtag ttgattcagc aaaaataggg atggttgatt 4440 cttcttctcg tatctggcgg gttccaggag tctgagattc tagcatcaga ttagttaaag 4500 tctccaagat agccttgcgt tgaactgatg cagcagtggg tacttcattc tcagcagaat 4560 catcataaac ctcaggatgg tctccacgaa ttatttctac tttggcatct gtggctctga 4620 agatcaagaa tgccaacaag acagaactca gggcaattgt gaaaagactc acttttacca 4680 ctagttctag tagttttaaa attctcatcc tagacgtctg ctcagattat aatggttata 4740 tgattaattt caagatgtct ggattaaggt ttttgtttgc actgattgct ct 4792 //