ID KC261949; SV 1; linear; genomic RNA; STD; VRL; 2971 BP. XX AC KC261949; XX DT 04-JUN-2013 (Rel. 117, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate TSWV-4 segment S, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2971 RX PUBMED; 23696821. RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.; RT "Phylogenetic and recombination analysis of tomato spotted wilt virus"; RL PLoS One 8(5):E63380(2013). XX RN [2] RP 1-2971 RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; ff0483dab3f2a5530a59b7cb4c716b5f. XX CC GenBank Accession Numbers KC261947-KC261949 represent sequences CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-4. CC CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2971 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="pepper" FT /isolate="TSWV-4" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="Sep-2009" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:R9RT75" FT /protein_id="AGM53754.1" FT /translation="MSSSVYESIIQTKASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSININGSVLALSVCSNT FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKVEMCYNQALGKVNVLSPNRNVHEWLYCFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDEINKTFYLSI FT ACIPNHNSVETALNISVICKHQLPIRKCQAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNYELIPGKLDLGERTLNYSEDICKRKYFLSKT FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSVSVAKSLLKLDLSGIKKKGSKI FT SEAYASGSK" FT gene complement(2044..2820) FT /gene="N" FT CDS complement(2044..2820) FT /codon_start=1 FT /gene="N" FT /product="nucleocapsid protein" FT /db_xref="GOA:R9RVH5" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:R9RVH5" FT /protein_id="AGM53755.1" FT /translation="MSKVKLTKENIVALLTQNKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAILAELA" XX SQ Sequence 2971 BP; 951 A; 547 C; 468 G; 1005 T; 0 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cacaatactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttatgagt cgatcattca 120 gacaaaagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggtactg gttctccact agttcaaacc cagttgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa ggtagggaat cttccttgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 360 caatggctct gttctggcac tatctgtttg ctcaaataca gtcaatacca acggagtgaa 420 acatcaaggt catttgaaag ttttgtctcc tgctcagctc cactctattg gatctaccat 480 gaacagatct gatattacag accgattcca gctccaagaa aaagacataa ttcccaatga 540 cagatacatt gaagctgcaa acaagggctc tttgtcttgt gttaaagagc atacctataa 600 ggtcgagatg tgctacaatc aagctttggg caaagtgaat gttctatccc ctaacagaaa 660 tgtccatgaa tggctgtact gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtaaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcag gcttttgtaa aagcttccac tgattctcat ttcaaactga gcctctggct 840 aagagttcca aaggttttaa agcagatttc cattcagaaa ttgttcaaag ttgcaggaga 900 tgaaataaac aaaacatttt atttatctat tgcttgcatt ccaaaccata acagtgttga 960 gacagcttta aacatttctg ttatttgcaa gcatcagctc ccaatccgta aatgtcaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat ccccaaagga ttgttcatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttgc aagaagatgt gatcatctac actttgaaca actatgagct 1200 aattcctgga aagttagatc taggtgaaag aaccttaaat tacagtgaag atatctgcaa 1260 aaggaaatat ttcctgtcaa aaacacttga atgtcttcca tctaacacac aaactatgtc 1320 ttacttagac agcatccaaa tcccttcctg gaagatagac tttgccaggg gagaaattaa 1380 aatttctcca caatctgttt cagttgcaaa atctttgtta aagcttgatt taagcgggat 1440 caaaaagaaa ggatctaaga tctcagaagc atatgcttca ggatcaaaat aatcttgctg 1500 tgtccagctt ttcctaatta tgttgtattt attttctttc tttacttata attgtttctc 1560 tattttgtta tttcttttga atttctcctg tttaatagaa accataaaaa taaaataaaa 1620 atagaaataa aaatcaaaat gaaacaaaaa tcaaaaaatg aacaaaaatc aaacaaaaat 1680 caaaaaatga aataaaaaca acaaaaaaat aaaaaacaaa aaaccaaaaa agatcccgaa 1740 agggacaatt ttggccaaac gggttttgtt tttgtttttt gttttttgtt ttttgttttt 1800 tattttattt ttatttttat ttatttattt tattttattt ttatttttat tttttatttt 1860 attttcattt tatgtttttt gttgtttttg ttattttgtt tattattaag cacaacacac 1920 agaaagcaaa ctttaattaa acacacttat tttaaattaa cacactaagc aagcacaagc 1980 aataaagata aagaaagctt tatatattta taggcttttt tataatttaa cttacagctg 2040 cttttaagca agttctgcaa gtattgcctg ttttttaacc ccgaacattt catagaactt 2100 gttaagagtt tcactgtaat gttccatagc aatacttcct ttagcattag gattgctgga 2160 gctaagtata gcagcatact ctttcccttt cttcacctga tcttcattca tttcaaatgc 2220 tttgcttttt agcacagtgc aaacttttcc tagggcttcc ctggtgtcat acttctttgg 2280 atcgatcccg aggtctttgt attttgcatc ctgatatata gccaagacaa cactgatcat 2340 ctcaaagcta tcaactgaag caataagagg taagctacct cccagcatta tggcaagcct 2400 cacagacttt gcatcatcaa gaggtaatcc ataggcttga atcagagggt gagaagcaat 2460 cttagatttg atagtattga gattctcaga attcccagtt tcctcgacaa gcctgaccct 2520 gatcaagcta tcaagccttc tgaaggtcat gtcggtggct ccaatcctgt ctgaagtttt 2580 ctttatggta attttaccaa aagtaaaatc actttgctta ataaccttca ttatactctg 2640 acgattcttc aggaatgtca gacatgaaat aatgctcatc ttcttgatct ggtcaaggtt 2700 ttccagacaa aaagtcttga agttgaatgc taccagattc tgatcttcct caaattcaag 2760 atctttgttt tgtgtcaaca aagcaacaat gttttcctta gtgagcttaa ccttagacat 2820 gatgatcgta gaagttgtta tatgctttga ccgtatgtaa ttcaaggtgc gaaagtacaa 2880 ctctgtattc cgcagtcgtt tcttagggtt ttaatgtgat gatttgtaag actgagtgtt 2940 aaggtttgaa taaaattgac acaattgctc t 2971 //