ID KC261948; SV 1; linear; genomic RNA; STD; VRL; 4781 BP. XX AC KC261948; XX DT 04-JUN-2013 (Rel. 117, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate TSWV-4 segment M, complete sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RC Publication Status: Online-Only RP 1-4781 RX PUBMED; 23696821. RA Lian S., Lee J.S., Cho W.K., Yu J., Kim M.K., Choi H.S., Kim K.H.; RT "Phylogenetic and recombination analysis of tomato spotted wilt virus"; RL PLoS One 8(5):E63380(2013). XX RN [2] RP 1-4781 RA Lian S., Lee J.-S., Cho W.K., Kim K.-H.; RT ; RL Submitted (27-NOV-2012) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; 5c14b79a3ec00238341135865c490273. XX CC GenBank Accession Numbers KC261947-KC261949 represent sequences CC from the 3 segments of Tomato spotted wilt virus isolate TSWV-4. CC CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4781 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="pepper" FT /isolate="TSWV-4" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="Sep-2009" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="nonstructural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:R9RWA8" FT /protein_id="AGM53756.1" FT /translation="MLTFFSNKGSSKSAGKDEGPLVSLSKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALIDPNMPSEKQV FT ILKGQGTITDPICFVFYLNWSIPKINNTPENCCQLHLMCNQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCVVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEGEGISDSVAQLSFDEI" FT gene complement(1290..4697) FT /gene="Gn-Gc" FT CDS complement(1290..4697) FT /codon_start=1 FT /gene="Gn-Gc" FT /product="glycoprotein precursor" FT /db_xref="GOA:R9RUY8" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:R9RUY8" FT /protein_id="AGM53757.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDTITESIFGTNIVIEG FT PNDCIENQNCVAHPSIDNLIKCRLGCEYLDLFKNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGVTIGELIAHGPDGHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKRPSITSTRL FT NCNGCLLCGQGLSCILEFFSDLTLSTSISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIAFIFLAIYFCSILTTICKGYVKNESYKSRSKIEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSQLV" XX SQ Sequence 4781 BP; 1534 A; 845 C; 853 G; 1549 T; 0 other; agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactt ttttcagtaa 120 taaggggtct tctaagtctg ccggaaagga tgaaggtcct ttagtttcac tatctaaaca 180 taatggtaat gttgaagtct caaaaccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggc tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcagaac gctaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tctaggattg tgatatgggt ctgccccact ataccaaacc ctacaggaaa 540 acttgtggtt gccctaatcg atcccaacat gccatctgaa aagcaagtca ttctgaaggg 600 tcagggaaca ataactgatc ctatatgttt tgtcttttat ctgaactggt ctattccaaa 660 aataaacaac actccagaaa actgctgtca gctgcatttg atgtgcaacc aagaatacaa 720 gaaaggggtt tcttttggta gtgtcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagacaaaa gttgtgtggt tatacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaaggaaaca gtgagaagca 900 gattaaaaaa cagcttaaag agttgagctc aaatcttgag agatcagttg aagaagaagg 960 ggaagggatt tctgatagtg ttgctcagtt atcctttgat gaaatatagt acttttaata 1020 ccacttgttt aagcttaaat ttctgttaat tttgcatttt aaaatcaaaa aacaaaacaa 1080 aacaaaaaac aaaaaaggaa agcaaaaaac aaaaaaatca aaaaaggaaa caaaaacaaa 1140 ataaggctga aaagccaaac tttggtccga agactctttt tgttgttttt tgtttatttg 1200 tattttttgt ttgtttttta tttattttat atatacataa tctgactaat gtagaggatt 1260 gaatcaaatt tagcctgtga caagcagcct cagacaagtt gagagaaatc cataggtggc 1320 cttcgtcttg tcattgtatc tttcattaac ataggggctt tgatctcgga atcatcatca 1380 tcctctatct tggatctaga tttataagat tcattcttga catatccttt acaaatggtt 1440 gttagaatag aacagaaata aattgcaagg aaaatgaatg caataagcaa tatcactctg 1500 atagtatcaa aaaacgagcc aaaataactt gcaatgaaat tgaatgggct cttaatataa 1560 tcccagaagc cccatgctga agaatcagaa ttatattgtt gttcttcatg agcatactca 1620 tcattttgat ctattatgtt ctctggttct tctacaacaa cattattgac cagaacctcc 1680 acagaaatat ctggattgcc ttctggatac aacgtcattt tcttcttgtc cggattagca 1740 gaacaaaaca ttgttatgtt gtatttattt gacccttttt taacagccag ttgataagta 1800 gatagagagc aagcatctat agaaattgaa gtagaaagtg tcaaatccga gaaaaattct 1860 aaaatgcaag ataaaccttg accgcataga agacagccgt tgcaatttaa tcttgttgaa 1920 gttatggaag gtctcttagg agcaacttta aaaagatcag atggaagatc aacgacaatc 1980 ttgagtttgc ctaaactgaa agctttttcc aagaaaaaac tagagaaatc tttgaaacta 2040 acaggaatat ctgatatttg ctctaaacca gatctaaatc tgtatgtatc atatccgcat 2100 gttttaatag tgattgattt tttccctatt gctgcacaat cccaagacat gtcatctcct 2160 tctagagttt tcttagtaaa aatgggcact ccatcatgag tcaattgtgg gtgaccaaac 2220 attttgacag gatcattcaa gtttgcaata tttccagaat aaatatggcc gtcaggtcca 2280 tgagctatca gttcacctat agtgacaccg tcattgtgca aatctgcttg tatatcagct 2340 tgaaacaagg cattttcata aggaacctct tcagtgatcc ttgagcactg acctcctaaa 2400 ataccagaaa tacaaacatc tgccactatg gttgatttta gcactgaata aattctgtat 2460 gatttgtcca tgtcatagat attccgacag aatccacatg tagcaccttc attgattgca 2520 aaacaccaag cttcttcaca tccccaataa gaagttggtg ttatacaaaa atcttggaaa 2580 cctgttaaag cttgattttt tctgcaagtg tcacagtttc ctgtacaagt tgaataaaaa 2640 tctgtgtgag tgctttggat aggagctgtt gtgtattttt ctgacacttc ataatgaatt 2700 cccacacttt tgatataaat cacaaatttt ttggctgttt ccgaggtttt atcattcaac 2760 atgaatatag tccctcctcc tcctaaaaga gattgttcta tcatgtatct atatttcccg 2820 tctacaacag aatcaaagat caatgattgt ctaggcagaa tgttctctgg tatgcttgtt 2880 tcatttttgt ttagagagtc tcctgcaatc attccagaaa ttttgtctgt acgattataa 2940 gaatctatta taccattcct caatctctta gcttcataca gaccaactga tgttaaccct 3000 aaagagcttc ctgtataatc tgaaaatccg ttatacaaag gtttgttttt aaataagtct 3060 aggtattcgc aacctaatct gcattttata agattgtcaa tagatgggtg tgcaacgcaa 3120 ttctggttct ctatgcaatc attaggacct tctataacaa tgttagtgcc aaagatactt 3180 tctgtaatcg tatcttcttt tacattacag taacattgat ctttttcagg gcatttttca 3240 aatttgcttg taaccaaaaa cggacagcct ggaacataaa aacatccact taaacattgg 3300 gtagtttgag ccatagacat gggcatttga gacaaaatga ccaaacctat taagatttca 3360 gtcacaaatt tcagcaaact gaagctcagc ttagtgttca ctattagatg gaaccattcc 3420 atgctagtcc acttatgttt gttgtagtca tgatctgttt ctttggacaa tatgggacac 3480 tctgaagaat gttcttttga agctttgctt ttgttgcaga tgcaaatttt agtacattca 3540 tgtgtgatta tgcacaaatt gccacagtta gaacatttaa atggaaaata tttccataag 3600 cagtttatga gcaacaaaat agggtatgtg atcaagccta taagatcata ccagagaaag 3660 aggggtttgg ttgtcttgtt tactaaccac cggataggga aatagatcaa caaagctatc 3720 aatattaatc ttatccaaga aaaattgatg caggctgttt gtttataaat gctttttgaa 3780 tatttgatta tgcaatctct aactcttttg tttgtttttg gtattttagc tgatttgtca 3840 ccgcacaaga gattgtgctc accgtccagc atttcctcag taaaagtgat gcttgctgat 3900 ccagaaaaag atatgacctt gtgttccaca ttttcaccag gcttttttat caaataaccc 3960 atgatcttct cagggctagt gatgctaaca gtatagggat tagcaaagtt tgatttagtt 4020 attttgcagt cgccagataa cttcacagtt tgtaatgata ctgttccatt agtagggtac 4080 gagttataag ttataggata attatcttgt gtcaggcttt ctgaaatgaa gaattttgtt 4140 ccaactgaaa aatgcctttt gttgtcaagt ttggtaatgg gaataaccgg gactttagag 4200 aatctttttg gcagatttaa agaattgtca catttttcta aaccttctgc tgaatcagaa 4260 acacaggaat atatgacacc attattttcc acttgataat aaacattata agtggatatc 4320 ccttttatct cacattttaa tgaagaagca ttcaagcagt tgttgggaag atccgagaca 4380 gagattgttt tttgcgtagt tgattcagca aaaataggga tggttgattc ttcttctcgt 4440 atctggcggg ttccaggagt ctgagattct agcatcagat tagttaaagt ctccaagata 4500 gccttgcgct gaattgatgc agcagttggt acttcattct cagcagaatc atcataaacc 4560 tcaggatggt ctccacgaat tatttctact ttggcatctg tggctctgaa aatcaagaat 4620 gccaacaaga cagaactcag ggcaattgtg aaaagactca cttttaccac tagttctagt 4680 agttttaaaa ttctcatctt agacgtctgc tcagattata atggttatat gattaatttc 4740 aagatgtctg gattaaggtt tttgtttgca ctgattgctc t 4781 //