ID   KC243099; SV 1; linear; genomic RNA; STD; VRL; 1356 BP.
XX
AC   KC243099;
XX
DT   10-MAR-2013 (Rel. 116, Created)
DT   05-SEP-2014 (Rel. 122, Last updated, Version 3)
XX
DE   Sweet potato chlorotic stunt virus isolate Zhejiang-11-4 segment RNA1 RdRp
DE   gene, partial cds; and RNase3 and p7 genes, complete cds.
XX
KW   .
XX
OS   Sweet potato chlorotic stunt virus
OC   Viruses; Riboviria; Closteroviridae; Crinivirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1356
RX   PUBMED; 25170926.
RA   Qin Y., Wang L., Zhang Z., Qiao Q., Zhang D., Tian Y., Wang S., Wang Y.,
RA   Yan Z.;
RT   "Complete genomic sequence and comparative analysis of the genome segments
RT   of sweet potato chlorotic stunt virus in china";
RL   PLoS One 9(8):E106323-E106323(2014).
XX
RN   [2]
RP   1-1356
RA   Qin Y., Zhang Z., Qiao Q., Zhang D., Tian Y., Wang S.;
RT   ;
RL   Submitted (29-NOV-2012) to the INSDC.
RL   Henan Academy of Agricultural Sciences, Institute of Plant Protection,
RL   Huayuan Road No. 116, Zhengzhou, Henan 450002, China
XX
DR   MD5; 34cc53189c14a318bf0e06b1d6210b08.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1356
FT                   /organism="Sweet potato chlorotic stunt virus"
FT                   /segment="RNA1"
FT                   /host="Ipomoea batatas"
FT                   /strain="East African"
FT                   /isolate="Zhejiang-11-4"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /db_xref="taxon:81931"
FT   CDS             <1..394
FT                   /codon_start=2
FT                   /product="RdRp"
FT                   /note="ORF1b; expressed by +1 frameshift; involved in viral
FT                   replication"
FT                   /db_xref="GOA:M1TAA1"
FT                   /db_xref="InterPro:IPR001788"
FT                   /db_xref="UniProtKB/TrEMBL:M1TAA1"
FT                   /protein_id="AGG40833.1"
FT                   /translation="KTKELNINFGFEAKFIENSVPYFCSKFIVDDRGSIKVVPDPVRFF
FT                   EKLSVPVRLSDFLTETTLRERFTSYKDLMSEYDNDSVCILVDSLISKRYSLPLMTSYAA
FT                   LCFIHCLCANFSSFRKIFDEFFVVDI"
FT   CDS             408..1097
FT                   /codon_start=1
FT                   /product="RNase3"
FT                   /note="ORF2; putative ribonuclease III"
FT                   /db_xref="GOA:M1TIE7"
FT                   /db_xref="InterPro:IPR036389"
FT                   /db_xref="UniProtKB/TrEMBL:M1TIE7"
FT                   /protein_id="AGG40834.1"
FT                   /translation="MMVPIYSDVSEESKLTVFGSRHRLDSIVHSVCTSGDRDRYEILGD
FT                   WAVASYVTRMLTDLFKHNADAESLSLLRAHNISNVMFAKVMVESKLFEDFYLWSTPDQM
FT                   QLCRKTFAGGRGLYEVNVKFLANYFERIVGWLVVHDCSESVEKFLDLFLKPHMSFHIKK
FT                   PARSILEEWAMKNNKRLDIHTGEYNVNKVVYVLVDGQEVSRASDLISKKRAISKAVSFA
FT                   VEALNLS"
FT   CDS             1102..1275
FT                   /codon_start=1
FT                   /product="p7"
FT                   /note="ORF3; putative membrane protein"
FT                   /db_xref="GOA:M1T247"
FT                   /db_xref="UniProtKB/TrEMBL:M1T247"
FT                   /protein_id="AGG40835.1"
FT                   /translation="MEYSAIFNECCKECVMFNPKKCRFDVALLWSGVGFFTFNIILLFV
FT                   YCLLSIRIRRSY"
FT   3'UTR           1276..1356
XX
SQ   Sequence 1356 BP; 354 A; 209 C; 301 G; 492 T; 0 other;
     caagactaaa gaattgaaca ttaatttcgg gtttgaagca aagtttattg aaaattctgt        60
     cccgtatttc tgttctaagt tcattgtgga tgaccgaggt tcgattaaag ttgtgcccga       120
     tccggtcaga ttttttgaga agttgtccgt acctgtgagg ctgtctgatt ttctaactga       180
     aacaacgttg agggagaggt ttacctcata taaggatttg atgtctgagt atgataacga       240
     tagtgtatgc atattggtcg actcacttat cagtaagaga tattctcttc cgttaatgac       300
     ctcatatgcg gcattgtgtt tcatacattg tttgtgtgct aatttttcgt cgtttcgtaa       360
     gattttcgac gagttctttg ttgttgatat ttgattttcc accgattatg atggttccga       420
     tttattccga cgtttccgag gaaagcaagc ttactgtctt cggaagtcgt catagattgg       480
     attctattgt acacagcgtt tgtacttcag gtgatagaga cagatatgag attttaggtg       540
     attgggctgt cgcatcgtat gtcacgcgta tgctgacaga tctcttcaaa cataatgctg       600
     atgctgaatc tctgtcgttg cttcgcgctc ataatatttc taatgttatg ttcgcaaaag       660
     tcatggtaga atcaaaactc ttcgaagatt tttatctttg gtcgactccc gaccaaatgc       720
     agttgtgtag gaagactttc gccggtggga gaggtctgta tgaggtcaat gttaaattct       780
     tagccaacta ttttgagaga atcgttggtt ggttagttgt gcatgattgt tcagaaagtg       840
     ttgagaagtt tcttgatctt ttcttgaagc ctcatatgtc tttccacatt aagaaacctg       900
     cccgttctat tcttgaagaa tgggccatga agaataacaa gagacttgac attcatactg       960
     gtgagtataa tgtcaacaag gtagtttatg tcctagtcga cggacaagag gtcagtcggg      1020
     ctagtgattt gattagtaag aagagagcaa tttcaaaagc ggtttctttc gctgttgaag      1080
     ctctaaatct gagttgaatc catggagtac tctgctattt ttaatgaatg ttgtaaagaa      1140
     tgtgtgatgt ttaaccccaa gaaatgtcgc tttgatgtgg cactactttg gtctggtgtt      1200
     ggattcttta cttttaatat tattttattg tttgtatatt gccttttgag tattagaatt      1260
     agaaggtctt attaataatt agggtatttt tgattaacgt ttgtatccta gagtcatata      1320
     cgtgttttca tagtgtgtat tttaaaaact caaaaa                                1356
//