ID KC176781; SV 1; circular; genomic DNA; STD; VRL; 2547 BP. XX AC KC176781; XX DT 28-DEC-2012 (Rel. 115, Created) DT 28-DEC-2012 (Rel. 115, Last updated, Version 1) XX DE Tomato yellow mottle virus segment DNA-B, complete sequence. XX KW . XX OS Tomato yellow mottle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2547 RA Maliano M.R., Melgarejo T., Rojas M., Barboza N., Gilbertson R.L.; RT "Tomato Yellow Mottle Virus, a new begomovirus in Costa Rica"; RL Unpublished. XX RN [2] RP 1-2547 RA Maliano M.R., Melgarejo T., Rojas M., Barboza N., Gilbertson R.L.; RT ; RL Submitted (13-NOV-2012) to the INSDC. RL Plant Pathology, UC Davis, One Shields Avenue, 354 Hutchison Hall, Davis, RL CA 95616, USA XX DR MD5; 5c304721034fdc6139231cfb56b14da1. XX CC GenBank Accession Numbers KC176780-KC176781 represent the complete CC genome of Tomato yellow mottle virus. XX FH Key Location/Qualifiers FH FT source 1..2547 FT /organism="Tomato yellow mottle virus" FT /segment="DNA-B" FT /host="Solanum lycopersicum" FT /mol_type="genomic DNA" FT /country="Costa Rica" FT /collection_date="2003" FT /clone="31" FT /db_xref="taxon:86502" FT gene 457..1227 FT /gene="BV1" FT CDS 457..1227 FT /codon_start=1 FT /gene="BV1" FT /product="nuclear shuttle protein" FT /db_xref="GOA:L0G640" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:L0G640" FT /protein_id="AGA80997.1" FT /translation="MYHSRYRRTWLSTQRRAYNRQPPFKRLYTSRRNELKRRPISDVIA FT YDDKKMSAQRIHEDQFGPEFVMLHNTAFSTYVTYPSIVKNVPNRVKSYIKIKRLRFKGT FT LKIERVHADVNMDCPVSKIEGVFSMVIVVDRKPHLNATGCLLTFDELFGARIHSHGNLA FT ITPALKDRFYIRHVLKRVLSVEKDSLMVDLEGTTTFSSKRFSCWSSFNDLERDSCNGVY FT ANISKNAILVYYCWMSDVMSKASTFVSFDLDYVG" FT gene complement(1315..2196) FT /gene="BC1" FT CDS complement(1315..2196) FT /codon_start=1 FT /gene="BC1" FT /product="movement protein" FT /db_xref="GOA:L0G7L6" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:L0G7L6" FT /protein_id="AGA80996.1" FT /translation="MDSQLVIPPNAFNYIDSHREEYQLSHDLTEIVLQFPSTAAQLSAR FT LSRSCMKIDHCVIEYRQQVPINASGTVIVEIHDKRMQDNESLQASWTFPIRCNIDLHYF FT SSSFFSLKDPIPWKLYYKVSDSNVHQRTHFAKFKGKLKLSTAKNSVDIPFRAPTVRILS FT KQFTEKDIDFHHVGFGKWERRLVRSASSRIIGLPGPIEIRPGESWASRSTIGTAHSNAE FT SEVTDALYPYRELNRLSTPILDPGDSASVIGIQRTESNLTMSMSQLNDIVRSTVQECIN FT TNCVPPVPKSLK" XX SQ Sequence 2547 BP; 746 A; 470 C; 522 G; 809 T; 0 other; accggatggc cgcccgattg tttgtgcctc tctggatggt cgccacgtgc cccttggagt 60 gctttatata ctattgggcc ttctgttgaa taaggcccag gcccatttat ggtgctgtat 120 tacaattatt tcgggaccac taaaaatgac aaggacagct gaccaattac tcagcaactt 180 ccgagttaaa ttattaacga ctttattact actttatgtt taatgatttt tgtgaggacc 240 agctttgtca tttttacatg aatttgaatt aacttggcgc gacctcaaat tgctgtaatt 300 atgtggacct accatgttaa tggataatgt agtacgacat aaccaattaa atttcagcta 360 caacatcaag ttacatttct atatctgtga catattaatt taaatagtta accaagtgta 420 caggttgaca tctcaattga ttatcatttt gtgaatatgt atcattctag atacaggcgc 480 acctggttat ctacacaacg tcgagcatat aatcgacaac caccgtttaa gcgtctatat 540 acttcgagac gtaatgaact taaacgtcgt cccattagcg atgttattgc ttatgacgat 600 aagaagatgt ctgctcagcg tatacatgag gatcaatttg gaccagaatt cgttatgttg 660 cataatacag ctttttcaac ttatgttact tatcccagca tagtgaagaa tgtacctaac 720 agagttaagt catatattaa gataaaacgg ttacgtttta aggggacttt gaagatagaa 780 cgtgtacatg cagatgttaa catggactgt ccagtttcta agatagaagg agtgttctct 840 atggttattg tggttgatcg taaaccacat ttgaacgcaa caggatgtct actgacgttt 900 gacgagttat ttggggctag gattcatagt catggtaatc tagctataac tccagccttg 960 aaagatcgtt tttatattcg tcatgtattg aaacgagtat tatcggttga gaaagatagc 1020 ttgatggtgg accttgaagg aacgacaacg ttttctagca aacgatttag ttgttggtct 1080 tcttttaacg accttgagcg agattcatgt aatggtgttt atgctaatat tagcaagaac 1140 gctatcttgg tgtattattg ctggatgtca gacgtaatgt ctaaggcatc aacatttgta 1200 tcattcgatc tcgactatgt tggctaaata aaaatgtttt tgttgtacgt ttatttattt 1260 cagctaatta aacattgaca agaggcttat aagaataata gaaatataat attttcattt 1320 caaagatttg ggcacgggag gaacacagtt tgtgttaata cactcttgaa cagttgacct 1380 gacaatgtca tttaactgtg acatagacat tgttaagttg gactccgttc gctgaatccc 1440 aattactgac gcagaatcac ctgggtctaa aataggggtg cttaatctgt tcagctctct 1500 gtaagggtat agtgcgtcag taacctccga ttccgcattt gaatgggctg ttcctatggt 1560 acttctacta gcccaagatt ccccaggcct tatttctatt gggcctggta gcccaattat 1620 tcgtgacgat gcggaacgga ctagtcttct ctcccacttt ccgaaaccca cgtgatggaa 1680 atcaatatcc ttctccgtaa actgtttcga caagatcctg accgtgggtg ctcggaaagg 1740 tatatccact gaatttttcg cagtagacag tttgagtttc cctttgaact tggcgaagtg 1800 cgtcctttgg tgtacattcg agtcactgac cttgtaatat aacttccaag gtataggatc 1860 ttttaacgag aagaacgacg atgaaaaata atgtagatct atgttacatc tgatcggaaa 1920 tgtccacgac gcttgtaatg actcattgtc ctgcatcctt ttgtcatgga tctccactat 1980 caccgttcca gatgcgttaa taggcacttg ttgcctgtat tcaatgacgc agtggtctat 2040 tttcatacag ctgcgactca atcgagcact tagctgagcc gccgtcgacg gaaactgcaa 2100 gacaatttca gttaggtcat gagaaagctg atactcttca cgatgagagt ctatgtaatt 2160 aaaggcatta ggaggaatga ctagctgaga atccatatat gaagagtagg ccgcgcagcg 2220 gaattgcttg ccggagtgta acagccgacg acctatttga agagtggaat agagataagt 2280 gaagaaaact acgaaatatg tgtaataaat atgtttaaat tatttatatt ataaacaact 2340 caagtggtat acccctatat atagacaatt atgagtaata aattatttca gtgttgaaga 2400 taatatcgag gggcattttt gtaataaaga gcgtaacacc aattgggttc ctctccaaaa 2460 tgtctaagca attggtgttt tggtgttgaa tttatactac aactctcaat actagaactc 2520 tccaaaagcg gccatccgta taatatt 2547 //