ID KC166238; SV 1; linear; genomic RNA; STD; VRL; 3971 BP. XX AC KC166238; XX DT 25-FEB-2013 (Rel. 115, Created) DT 12-DEC-2013 (Rel. 119, Last updated, Version 3) XX DE Rosa rugosa leaf distortion virus isolate MN-3, complete genome. XX KW . XX OS Rosa rugosa leaf distortion virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Pelarspovirus. XX RN [1] RP 1-3971 RX DOI; 10.1007/s00705-013-1763-y. RX PUBMED; 23812616. RA Mollov D., Lockhart B., Zlesak D.C.; RT "Complete nucleotide sequence of Rosa rugosa leaf distortion virus, a new RT member of the family Tombusviridae"; RL Arch. Virol. 158(12):2617-2620(2013). XX RN [2] RP 1-3971 RA Mollov D., Lockhart B.; RT ; RL Submitted (13-NOV-2012) to the INSDC. RL Plant Pathology, University of Minnesota, 1991 Upper Buford Circle, St. RL Paul, MN 55108, USA XX DR MD5; 6aaee34302cb933224c43eb28fb7f1d3. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3971 FT /organism="Rosa rugosa leaf distortion virus" FT /host="Rosa rugosa cv. Charles Albanel" FT /isolate="MN-3" FT /mol_type="genomic RNA" FT /country="USA:Minnesota" FT /collection_date="Jun-2009" FT /db_xref="taxon:535898" FT 5'UTR 1..6 FT CDS 7..2292 FT /codon_start=1 FT /transl_except=(pos:718..720,aa:OTHER) FT /product="RNA-dependent RNA polymerase" FT /note="p87; readthrough protein" FT /db_xref="GOA:M1NMF8" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:M1NMF8" FT /protein_id="AGF70694.1" FT /translation="MSLFFELAYLTAKAGFVVAKELALLATQIRNDEIVHIDVQTDRVR FT RVFGIQGREIIPTSDCTDLLNATQDLVVADPDLHEEECLEDIKEEVKGDGGEVSQKVVR FT RRVRKKLPFACILAADAKNHFGGVPSACRANELSVTKYLVSKCKERKLTVLQTRQVSSL FT AFCLVFTPDSNDKSIYQFLNSESVFERRCDYLKSQSVESCWMQLFSSPWNPKAWRRVIL FT RLSSLGPQEAFRFVKXGCLMETCGVDTKVFRGEHHWVKEGREAALPPPRKLYKISGLSP FT QVNWGVHNSSFVNLRRGLMERVFFVERQGKLAECPQPEKGAFRDLFNRVGHRLVRLCGN FT HSPIPRSEYPLLHEGRKRTIYENAVKSLEIAPYCRKDSYLKTFVKCEKLNFSKKPDPAP FT RVIQPRSPRYNVELGRYLKPFEHFLYRGLDRLWGGPTVMKGYTVQQMGRILRDKWNQYR FT RPAAIGFDMSRFDQHVSVDALRFEHRVYRECFSNDENLSRLLEHQIANSGVAYAKDGWL FT KYQVEGKRMSGDVNTAAGNCLLACCITYHLMQAAGISCSLVNNGDDCVVFLESEHCRAV FT EDILTEGWLKFGFTCIAERPVFELEKVEFCQMQPVLVGGDYCLVRNPRVSLSKDAHSTT FT PFDSVKLAREWAYSIGRGGLSLTSGVPVVQEFYQCLLRNGKQHSKRKRTAHFYGDYYAK FT WVDQHRGEYTAVSQESRHSFHLAFGISPDQQVAMENAYSELELVFEFAPFRNEINVFEW FT TINHPVVI" FT CDS 7..720 FT /codon_start=1 FT /product="replicase protein" FT /note="p27" FT /db_xref="UniProtKB/TrEMBL:M1P1T0" FT /protein_id="AGF70698.1" FT /translation="MSLFFELAYLTAKAGFVVAKELALLATQIRNDEIVHIDVQTDRVR FT RVFGIQGREIIPTSDCTDLLNATQDLVVADPDLHEEECLEDIKEEVKGDGGEVSQKVVR FT RRVRKKLPFACILAADAKNHFGGVPSACRANELSVTKYLVSKCKERKLTVLQTRQVSSL FT AFCLVFTPDSNDKSIYQFLNSESVFERRCDYLKSQSVESCWMQLFSSPWNPKAWRRVIL FT RLSSLGPQEAFRFVK" FT CDS 2069..2287 FT /codon_start=1 FT /product="putative 8 kDa protein" FT /note="p8" FT /db_xref="UniProtKB/TrEMBL:M1NGZ8" FT /protein_id="AGF70695.1" FT /translation="MATIMLSGWISTGVNTLLSLKSRDIVFTSRLGSARISKLLWKMHI FT RSWSLYSNSPHLETKSTFLNGQSTTQS" FT CDS join(2262..2437,2439..2610) FT /codon_start=1 FT /ribosomal_slippage FT /product="p12" FT /db_xref="GOA:M1NMG2" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:M1NMG2" FT /protein_id="AGF70699.1" FT /translation="MDNQPPSRDLSVDRTQKRGKRKNNLDVAHSGVAKSASASLVGASF FT VTVAETASFVVTLNFEVDLRLAPPNLLVAIVLCIFFSSVLSNGNSVSYYYQANSTSDKF FT ITVSVGNGSSG" FT CDS 2262..2444 FT /codon_start=1 FT /product="putative movement protein" FT /note="p6" FT /db_xref="GOA:M1MSN8" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:M1MSN8" FT /protein_id="AGF70696.1" FT /translation="MDNQPPSRDLSVDRTQKRGKRKNNLDVAHSGVAKSASASLVGASF FT VTVAETASFVVTLNF" FT CDS 2594..3613 FT /codon_start=1 FT /product="coat protein" FT /note="p37" FT /db_xref="GOA:M1NT64" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M1NT64" FT /protein_id="AGF70697.1" FT /translation="MAAADSPQVIQAASAGAQWAIKLRAKGWRSLTKLQKAQARTHGVG FT PVTPATIVPKVTRLVNGNPGNVRRRNGEPGNAMKSMTITKQEYLGTISAGGGVKTFILD FT PRNVRSFPQLSAFCLGYNKYKFTKLAFRYSPRVNDTTAGIICAYTSDSSDEAPRSKYQM FT YSINPRYEAVASKPLIVSIPPTKEPKFLRDKSSDDAKLVDSGSIHCLIDGDHEGKLGEI FT FLDLTVVLSEPTFNQCSMQEVTKTRHIKGPGYVQPSFQDGVVTLTFQASGSYLCTYSCA FT PITSLSQTGMEEAARVTTTSTEESSGFVEVVTEEPLSSVKFQFLNPASSKFHAYVTRM" FT 3'UTR 3614..3971 XX SQ Sequence 3971 BP; 953 A; 950 C; 1071 G; 997 T; 0 other; caaactatga gtttgttttt cgaacttgcc tacctgacag ccaaggctgg gtttgtggta 60 gctaaggagt tggcgctcct agccacccaa atccgcaacg atgagattgt gcatatcgat 120 gttcagacag accgagtgag gagggtcttc ggcattcagg ggagggaaat cattcctacc 180 tccgactgca ctgaccttct caacgccacc caggacttgg tggttgctga ccctgacctc 240 cacgaggaag aatgcctcga agatatcaag gaggaggtca agggggacgg tggtgaggtg 300 tcccagaagg ttgtgaggag gagggtaagg aagaaattgc ccttcgcctg catccttgcc 360 gcggacgcca agaaccactt tggaggagtt ccatcagctt gccgtgccaa cgaattgtcg 420 gtgaccaagt acttggtctc caaatgcaag gagcgcaagt tgaccgtgct gcaaacccgg 480 caggtctcat cgctggcgtt ttgccttgtt tttacacctg actctaacga taagtcaatc 540 taccagttcc tgaacagtga gtccgtgttt gagcgtagat gtgactactt gaaaagtcaa 600 agtgttgaaa gctgctggat gcagctgttc tcttccccgt ggaatccaaa ggcttggcgg 660 agggtgatcc tccgtctgag cagcctgggg cctcaagagg ccttcaggtt tgttaaatag 720 gggtgcctca tggagacctg tggtgtggac acgaaagtgt tccgaggaga acaccactgg 780 gttaaggaag gccgtgaggc ggctctccct cctcctagga agttgtataa gattagcggt 840 ctgtcccccc aggttaactg gggtgttcat aatagtagtt ttgtcaacct tcgtcgtggg 900 ctcatggagc gggtcttctt tgttgagaga caagggaaac ttgctgagtg tccccagcct 960 gagaagggag cgtttaggga tcttttcaat agggtcgggc acagacttgt tagattgtgt 1020 ggaaatcatt cccccatccc gaggagcgag tatcctctgt tgcatgaggg caggaagcgc 1080 acgatctacg agaatgctgt caaatcctta gaaattgccc cctactgtag gaaagatagt 1140 tatcttaaaa cgtttgttaa gtgtgaaaag cttaatttta gtaagaagcc tgatccagct 1200 ccaagagtca ttcagccgag gagtccgcga tacaacgtgg agttgggtcg gtatttgaaa 1260 ccgtttgagc actttttata cagaggatta gataggttgt ggggcgggcc taccgttatg 1320 aagggctaca cagttcaaca aatgggtcgc atcctacgag acaagtggaa tcagtaccgg 1380 aggcctgctg cgattgggtt tgacatgagt cgatttgacc agcatgtttc cgtggacgcc 1440 ttgaggtttg aacacagggt gtaccgcgag tgcttcagca acgatgagaa tttgtccaga 1500 ttattggaac atcaaatcgc aaattccggg gttgcgtacg ccaaagatgg ttggctgaaa 1560 taccaagttg aagggaaaag gatgagtggg gacgtgaaca ccgctgccgg gaattgcctc 1620 ttggcctgtt gcatcaccta ccacctaatg caagctgctg gcatcagctg ttctctcgtt 1680 aataatgggg atgattgtgt tgtgtttctt gagtctgagc attgtcgcgc cgtcgaggat 1740 atcttgacgg aggggtggct caagttcgga ttcacctgca tagctgagcg tcccgttttt 1800 gaattggaga aagttgagtt ctgtcaaatg caacctgtgt tggtgggcgg cgattactgc 1860 cttgtgcgca acccccgtgt gagcctgagc aaggatgcgc actcaaccac cccctttgac 1920 tcggttaaat tagctaggga atgggcgtac agcattgggc gcggagggtt aagtttgacc 1980 tcgggagtcc cagttgtcca ggagttttac cagtgccttt tgcgtaacgg gaagcaacac 2040 tccaaaagga aaagaacagc gcacttctat ggcgactatt atgctaagtg ggtggatcag 2100 cacaggggtg aatacactgc tgtctctcaa gagtcgagac atagttttca cctcgcgttt 2160 gggatcagcc cggatcagca agttgctatg gaaaatgcat attcggagtt ggagcttgta 2220 ttcgaattcg ccccatttag aaacgaaatc aacgtttttg aatggacaat caaccaccca 2280 gtcgtgatct gagcgtagac cgcacccaaa agcgtggcaa acgaaagaac aacctagacg 2340 tcgcacactc tggagttgcc aaatcggcat ctgcttctct tgttggcgct agttttgtta 2400 cagttgctga aactgccagc tttgtggtca ctctcaattt ttgaagttga tttgaggttg 2460 gcgcctccga atcttctcgt cgcaatcgtc ctgtgcatct tcttttcttc tgtgctttct 2520 aacggcaatt cggtttctta ctactaccag gctaatagta ctagcgataa gtttataact 2580 gtctctgtag gaaatggcag cagcggatag tccgcaggtt attcaagctg cgtctgctgg 2640 ggcccaatgg gccatcaagc tgcgggctaa aggctggagg agcttaacca agcttcagaa 2700 agctcaagct cgcacccacg gggtcggtcc tgtgaccccc gccaccatcg tgcctaaagt 2760 caccaggctt gtcaatggca atccggggaa cgttcgtcgt cggaatggtg agcccggcaa 2820 cgctatgaaa agcatgacta tcacgaagca agagtacctc ggcaccatct cagctggagg 2880 tggtgtcaag accttcatcc tcgatccgcg caacgtgagg agcttccctc agttgagcgc 2940 attctgtttg gggtacaaca agtacaagtt cacgaaactt gctttcaggt acagtcctcg 3000 agtcaacgat accaccgcag gcatcatctg tgcctacact agtgactctt ctgatgaggc 3060 cccccgaagc aagtaccaga tgtacagcat caatcccaga tacgaggccg tagccagcaa 3120 acctctcatc gtctccatcc ctccgactaa ggaaccgaag tttcttcggg acaagtcttc 3180 tgatgacgcc aaacttgtcg acagtggttc aatccactgt ttgattgatg gtgatcatga 3240 gggaaagctt ggagaaatct ttctcgatct gaccgtggtt ctctctgagc ccacgttcaa 3300 ccagtgctcg atgcaagagg tcaccaaaac gaggcacatc aaaggaccag ggtacgtcca 3360 accctcattc caagacgggg tggttacact gacgtttcag gcgtcagggt cctacctctg 3420 tacatactcc tgtgccccga tcacatcgct gagccaaacc ggcatggaag aagctgctag 3480 agtcacgacc acgtctacag aggaaagtag cgggtttgtt gaggtggtga cagaagaacc 3540 cctcagttct gttaagttcc agttcttaaa tcctgcgtcg agcaaattcc acgcgtatgt 3600 tactagaatg tgagttgctg gagtcagacc ctggtgcgcc aacacccaga agggggtcaa 3660 ccaacttgct tttagttact gcgtgcggtc tttcctctat gataagcgtg ggcattaata 3720 atactcatga ataacccagt ctcgcatgat ggagtgaaat cttttcaccc cgtcaaacgg 3780 gccagggtta ttctgagtgt tacgatgcca tagtatctac tttgtagtta gtgcgtgtcg 3840 tcagacattg taaatatgtc gtgtcgaggt caccaggcaa aatccttcgg gtgggcgtcc 3900 tggggtctca aacctccttc ctggagggtg ttctaaagaa ggggaagttt aacccacttc 3960 ccccttcgcc c 3971 //