ID KC161184; SV 1; circular; genomic DNA; STD; VRL; 2732 BP. XX AC KC161184; XX DT 20-FEB-2013 (Rel. 115, Created) DT 27-NOV-2014 (Rel. 123, Last updated, Version 2) XX DE Papaya leaf curl virus isolate PF1, complete genome. XX KW . XX OS Papaya leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2732 RX DOI; .1094/PDIS-05-13-0554-PDN. RX PUBMED; 30703901. RA Cheng Y.H., Deng T.C., Chen C.C., Chiang C.H., Chang C.A.; RT "First Report of Euphorbia leaf curl virus and Papaya leaf curl Guangdong RT virus on Passion Fruit in Taiwan"; RL Plant Dis. 98(12):1746-1746(2014). XX RN [2] RP 1-2732 RA Cheng Y.H., Deng T.C., Chen C.C., Chiang C.H.; RT ; RL Submitted (13-NOV-2012) to the INSDC. RL Plant Pathology Division, Agricultural Research Institute, 189 Zhongzheng RL Rd., Wufong, Taichung 41301, Taiwan XX DR MD5; 6974c8316a7e8492cf1e5c6c4b4e246c. XX CC ##Assembly-Data-START## CC Assembly Method :: NTI v. 8 CC Assembly Name :: ContigExpress CC Coverage :: 200 CC Sequencing Technology :: 454 CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2732 FT /organism="Papaya leaf curl virus" FT /host="Passiflora edulis x Passiflora edulis f. flavicarpa" FT /isolate="PF1" FT /mol_type="genomic DNA" FT /country="Taiwan" FT /collected_by="Y. H. Cheng" FT /collection_date="Mar-2011" FT /identified_by="Y. H. Cheng" FT /db_xref="taxon:53260" FT CDS 115..465 FT /codon_start=1 FT /product="V2" FT /db_xref="GOA:M1LJF2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:M1LJF2" FT /protein_id="AGF41092.1" FT /translation="MWDPLMNEFPDTVHGFRCMLAVKYLQLVESTYSPDTLGYDLIRDL FT ISVLRARNYVEATSRYCHFHTRFEGTTSSQLRQPLQQPCCCPHCPRHKQKENMGQPAHV FT PEAQNLQNVQKP" FT CDS 275..1048 FT /codon_start=1 FT /product="V1" FT /db_xref="GOA:M1LEG1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:M1LEG1" FT /protein_id="AGF41093.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYNSRAAAPTVLVTNKRRTW FT VNRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGLTH FT RVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNE FT PSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQALVRKFMKINNHVTYNHQEAAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSTQN" FT CDS complement(1045..1449) FT /codon_start=1 FT /product="C3" FT /db_xref="GOA:M1LVR2" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:M1LVR2" FT /protein_id="AGF41096.1" FT /translation="MDSRTGEPITAAQAENGAYIWTVPNPLYFKIMHHHSRPFNTNHDI FT IDVQIRFNHNLRKALRIHQCFLDFRIWTHLHPQTSRFLRVFSSQCIKYLDNLGIVSINN FT VIRAVTHVLYDVLVGTFNVQETHVIKFNLY" FT CDS complement(1190..1597) FT /codon_start=1 FT /product="C2" FT /db_xref="GOA:M1LLJ7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:M1LLJ7" FT /protein_id="AGF41095.1" FT /translation="MQNSSPSRAHSTQVPIKVQHRIAKKKSIRRRRIDLKCGCSYYISI FT NCHNDGFTHRGTHHCSSSREWRVYLDGTKSPLFQDNASPQQTLQHEPRHNRCTNPVQPQ FT PEESIADTSVFSGLPDLDSFTSSDLAFLKSL" FT CDS complement(1497..2720) FT /codon_start=1 FT /product="C1" FT /db_xref="GOA:M1KTZ2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:M1KTZ2" FT /protein_id="AGF41094.1" FT /translation="MAALPIRNLNFLLRITIMPFGDMLYIVSSLQFIPEFRVSPIPSAD FT MATPKRFKIQAKNYFITYPKCSLTKEEALSQIQNIQTPTNKKYIKICRELHEDGSPHLH FT VLIQFEGKFVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTMEWGEFQI FT DGRSARGGQQSANDTAAKALNSGSAEAALAIIREELPKDFIFQYHNIKNNLDRIFAPPL FT EVFISPFPSSSFDQVPEELEEWAAENVVSAAARPWRPKSIVIEGESRTGKTMWARSLGP FT HNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKG FT GIPTIFLCNPGPNSSYKEYLDEEKNAALKNWTLKNAEFFTLTGPLYSGTNQSPTPHREE FT EINSQEEN" FT CDS complement(2171..2428) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:M1LJF8" FT /protein_id="AGF41097.1" FT /translation="MGALISTCSSSSKGSSSARITDSSTWYPQPGQHISIRTFRELNPA FT PTSSPTSTRMETPWNGENSRSTAEVLEGVSSQRTTLPQRH" XX SQ Sequence 2732 BP; 705 A; 569 C; 630 G; 828 T; 0 other; accggatggc cgctttttta gtggtgggcc ctcgacccat agaattgcgc gctcatcgct 60 tagttatcgc gtggtcccct atttaatact tgctcgctaa gttctgcttc aaaaatgtgg 120 gatccactta tgaatgagtt ccctgatact gtacatggtt tcaggtgtat gctcgctgta 180 aaatacttgc agttggtaga atctacgtat tcaccagata cactcggata cgatcttatt 240 cgagatttaa tttctgtctt acgtgcaagg aattatgtcg aagcgaccag cagatattgt 300 catttccaca cccgcttcga aggtacgacg tcgtctcaac ttcgacagcc cttacaacag 360 ccgtgctgct gcccccactg tcctcgtcac aaacaaaagg agaacatggg tcaaccggcc 420 catgtaccgg aagcccagaa tttacagaat gtacagaagc cctgatgtcc ctcgtgggtg 480 tgaaggccca tgtaaggtcc aatcttatga acagcgtcat gatatatccc atgtaggtaa 540 ggtcctttgt gtctccgatg tcactcgtgg taatgggctt acccatcgtg tgggcaagag 600 gttttgtgtt aagtcggttt atgtattggg taagatctgg atggatgaaa acatcaagac 660 taagaatcac actaataccg tcatgttctt cttagtgcgt gatagaagac cgtttggtac 720 tccccaagat tttggtcagg tgtttaacat gtatgataac gagcctagta ccgctactgt 780 gaagaatgac aacagagata ggtttcaagt tcttcgccgt tttcaagcta cggtgactgg 840 tggtcaatat gcaagcaagg agcaggctct agttaggaag tttatgaaga ttaacaacca 900 tgtcacttac aatcatcagg aagctgcgaa atatgaaaat catactgaga atgctttgct 960 gttgtatatg gcatgtactc atgcctcgaa tccagtgtat gctactttga aaattcggat 1020 ttatttctat gattcgacac aaaattaata aagattgaat tttattacat gtgtttcttg 1080 tacattaaat gttccgacta atacatcgta caatacatga gtaacagccc taattacatt 1140 atttattgat acaataccca aattatctaa atacttaata cattgactgc taaagactct 1200 taagaaacgc gaggtctgag gatgtaaatg agtccagatc cggaagtcca gaaaacactg 1260 atgtatccgc aatgctttcc tcaggttgtg gttgaaccgg atttgtacat ctattatgtc 1320 gtggttcgtg ttgaagggtc tgctgtggtg atgcattatc ttgaaataga ggggatttgg 1380 taccgtccaa atatacgcgc cattctcggc ttgagctgca gtgatgggtt cccctgtgcg 1440 tgaatccatc gttgtggcag ttgatggata tgtaatagct gcagccgcac ttgagatcaa 1500 ttctcctcct gcgaattgat ttcttcttcg cgatgcggtg ttggactttg attggtacct 1560 gagtagagtg ggcccgtgag ggtgaagaat tctgcattct tgagagtcca attctttagt 1620 gctgcattct tttcctcgtc taggtactct ttatagctgg agttgggacc aggattgcag 1680 aggaagatag tgggaattcc tcctttaatt tgaattggct tcccgtactt cgtgttgctt 1740 tgccagtccc tttgggcccc catgaactct ttaaaatgct ttaggtagtg ggggtcgacg 1800 tcatcgatga cgttatacca agcatcatta ctgtagacct ttgggctcag gtccaggtgt 1860 ccacataaat aattgtgtgg gcctaaagac ctggcccaca ttgtcttccc tgtcctactc 1920 tcgccctcta tgacaatact tttgggtctc catggccgcg cagcggcact aacaacattc 1980 tcagccgccc actcttcaag ttcttctgga acttgatcga aagaagaaga aggaaaagga 2040 gaaataaaaa cctccaaagg aggagcaaaa atcctatcta aattattttt aatattatgg 2100 tattgaaaaa taaagtcttt aggtagttcc tccctaataa tagccagagc ggcttcagcg 2160 gaacctgagt ttaatgcctt tgcggcagtg tcgttcgctg actgctgacc ccctctagca 2220 cttctgccgt cgatctggaa ttctccccat tccatggtgt ctccatcctt gtcgatgtag 2280 gacttgacgt cggagctgga tttagctccc tgaatgttcg gatggaaatg tgctgacctg 2340 gttggggata ccaggtcgaa gaatctgtta ttcgtgcaga cgaacttccc ttcgaactgg 2400 atgagcacgt ggagatgagg gctcccatct tcgtgaagct ctctgcatat cttgatatat 2460 tttttatttg ttggggtttg tatattctgt atttgggaaa gtgcctcttc ttttgtaaga 2520 gagcacttgg gataagtgat gaaataattt ttggcttgga ttttaaaccg tttcggtgtt 2580 gccatgtcag cagagggaat tggagacact cgaaactctg ggatgaattg gagactggag 2640 acaatatata gcatgtctcc aaatggcatt atcgtaattc tcaaaagaaa attcaaattt 2700 cgaattggta aagcggccat ccgtataata tt 2732 //