ID KC146843; SV 1; linear; genomic RNA; STD; VRL; 8217 BP. XX AC KC146843; XX DT 12-FEB-2013 (Rel. 115, Created) DT 20-MAY-2013 (Rel. 116, Last updated, Version 3) XX DE Sweet potato chlorotic stunt virus isolate Guangdong segment RNA2, complete DE sequence. XX KW . XX OS Sweet potato chlorotic stunt virus OC Viruses; Riboviria; Closteroviridae; Crinivirus. XX RN [1] RC Publication Status: Online-Only RP 1-8217 RX PUBMED; 23661487. RA Qin Y., Zhang Z., Qiao Q., Zhang D., Tian Y., Wang Y., Wang S.; RT "Complete genome sequences of two sweet potato chlorotic stunt virus RT isolates from china"; RL Genome Announc 1(3):E00218-13(2013). XX RN [2] RP 1-8217 RA Qin Y., Zhang Z., Qiao Q., Zhang D., Tian Y., Wang S.; RT ; RL Submitted (07-NOV-2012) to the INSDC. RL Henan Academy of Agricultural Sciences, Institution of Plant Protection, RL Huayuan Road No. 116, Zhengzhou, Henan 450002, China XX DR MD5; a1ef3535b38064b113ead67088699240. DR EuropePMC; PMC3650446; 23661487. DR EuropePMC; PMC4149548; 25170926. DR EuropePMC; PMC6054865; 30038869. XX CC GenBank Accession Numbers KC146842, KC146843 represent sequences CC from the 2 segments of Sweet potato chlorotic stunt virus isolate CC Guangdong. XX FH Key Location/Qualifiers FH FT source 1..8217 FT /organism="Sweet potato chlorotic stunt virus" FT /segment="RNA2" FT /host="Ipomoea batatas" FT /isolate="Guangdong" FT /mol_type="genomic RNA" FT /country="China:Guangdong" FT /collection_date="Jun-2011" FT /note="East African" FT /db_xref="taxon:81931" FT 5'UTR 1..88 FT CDS 89..238 FT /codon_start=1 FT /product="p6" FT /db_xref="UniProtKB/TrEMBL:Q8JJW5" FT /protein_id="AGE15463.1" FT /translation="MTQSIRESMGLCNPRTRISVTYWMQSDCPSYLLLFCVYKSKTQKY FT IFSP" FT CDS 554..712 FT /codon_start=1 FT /product="p6" FT /db_xref="GOA:M1GPU0" FT /db_xref="UniProtKB/TrEMBL:M1GPU0" FT /protein_id="AGE15464.1" FT /translation="MVCHIFKFGFSLYFSFLEYCLDYMLIVCFLLSAYSIFCDYLFSLS FT INLLNIL" FT CDS 984..2648 FT /codon_start=1 FT /product="hsp70h" FT /db_xref="GOA:F4ZUN7" FT /db_xref="InterPro:IPR013126" FT /db_xref="InterPro:IPR018181" FT /db_xref="InterPro:IPR029047" FT /db_xref="UniProtKB/TrEMBL:F4ZUN7" FT /protein_id="AGE15465.1" FT /translation="MEAKAGLDFGTTFSTISAYVGGTMKVLRINGSEFIPTCLSVTATG FT DVVVGGAAQVLDSSQLPHCYFYDLKRWVGVDRLSFEEIKRKISPQYTVRLEGNDVLITG FT ISKGFSCTYTVKQLILLYVDTLVRLFSNVEKLKILSLNVSVPADYKTKQRMFMKSVCES FT LGFPLRRIINEPSAAAIYSISKHPGFDYFLVYDFGGGTFDTSLIAKDGKFVTVADTLGD FT SFLGGRDIDRAILSHIMRTNSLQKPLSADSLAAIKEEVNSTGRSNFNVLDVDGSIIFVN FT FSGEELDKIVSKFTAKSLKILKAIADRNKITSGALFLVGGSSLLRKVQLDVSNFAKSIG FT LTPIIDKDLRSAVSYGCSMMHAQEDSGSMVYIDCNSHPLMDVSLFANPRVIIRKPMSVP FT FSYKTTRKVDRHMMTAVNVYEGSSLFVLDNDWLVSANVNTQDFVDLGQELSYVYKYNVD FT GILDLFVRNESTGVESLLPNSFALTEKVKKLDLNLTQLSSVDELATVVSILSHFDSSFS FT SLLKLVNTPSIFETSAAKFGDLRSLYERLIFVNKNFS" FT CDS 2670..4226 FT /codon_start=1 FT /product="p60" FT /db_xref="InterPro:IPR004909" FT /db_xref="UniProtKB/TrEMBL:M1GM30" FT /protein_id="AGE15466.1" FT /translation="MSQSIIDSDFVTETFRYAFKKTDVRDKLERLNEVMKDNLDQINRT FT KYSFNFQGQTYNLSSNYQVRNGVVHVNTEAPLEVLKLLSVYMYYVEPKYIDMSPYSPES FT LFGNPNYMKAVKMWKPYYDKSMNEYLNDRSEVGCLYTMDDIDKNYPTLSQTRKITLYRV FT CNSLGKLVDLKELSAGVLKAFEVKTSDVGQAVMTTTTNNALFGECVKVFKDFIVLNSTK FT AGKEKIEVNRKFLNSFLQCLSPKDELGNLGGNPLLIAWFMREFTNRTKNSKGYKDNFKA FT VVDLSQPMLKFLKDVFLKDLSLDEDSLFITFPKNSVVEIVDQVIPLAKFHRNQALPKPM FT SNSCDLPRDVDELVSKTIAEYLGKFVKTDEDLLLDAFLFVLGRCTTNQKRWTSGFEIDF FT KILGDRIKFDSKDLWYHLVNVVRTNHPRFRTNNLIRQWANNRGDRARAMFKICEYHPGL FT FGSIPRIDNHMRFDFFKLLNLRLMSESEKMSYYTLRLMTESKSNNSDKDFCKLVSWISV FT N" FT CDS 4208..4429 FT /codon_start=1 FT /product="p8" FT /db_xref="UniProtKB/TrEMBL:F4ZUN1" FT /protein_id="AGE15467.1" FT /translation="MDFSELIEKYGVERISSLTSRLLEIKRTGVGLVNLLLNLVNENFI FT HFDSNRSPCGFEKEDHDLILQIIPLLRI" FT CDS 4462..5235 FT /codon_start=1 FT /product="CP" FT /db_xref="GOA:M1GMU2" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:M1GMU2" FT /protein_id="AGE15468.1" FT /translation="MATDKVNDDKNFDSDSDVGFGDGNVNDNLRRRSDTIDNENVNNVG FT RRDMELTSGILTSEQLALARLGKIQVYSNSPDIMSKSQEDEFKRHMESFLKQITGETTL FT SSEIFAGFYASLFQAWANQSTSEKNASNANLENMFMVDGKEYSWRTHSFINHMQSNMPD FT VKNAARKWARAHANDYKVLVGLGIVKPDYHLQAKQGVLPEYWHLATDFMRGNDMATTAD FT GLAATLMMKRNALCNKDNKNSIYNVTQLTGTGLHC" FT CDS 5238..7292 FT /codon_start=1 FT /product="mCP" FT /db_xref="UniProtKB/TrEMBL:M1GPU2" FT /protein_id="AGE15469.1" FT /translation="MDILELEVDNIISTNYPDDESEIVTRAVGCKFNQDYSLPYKDREQ FT VDFSIPYTSALRSKPVTLELYFHIGSGYVVYTCKPADNFNQKIYESNLGSFFSSFRNLV FT TPRRPRGMNAFRFGYLREGNDCFIIVEGWRVVQISNANTIFGVSLRLSLDIGDVIFSKS FT DKLSANQIALDSCLECTRPDGLLKGAKPKSVNIFSETTQESVKVTPIGDIPLSVFNSVT FT DLNLKILRSGDDSTSIKDETQIDKDRTTMSNEEDKKKIFRIYYSNFLDNGFKNSLNYTI FT LWPQISCNGVDVNHQFWIGDREDMLEGGVHYIHTTSTNTIFFVHRKGNVSEYFKINEDQ FT SARILKTIPTELTFSIVKNPGSKYVVYVNGEKFLSTFLPNVGTKVQIGWEIKLYKDKVK FT SFEKSNLKTFEIVPRETQVKSDNELVTLRKYEFGTTDFNASGWVLEKKLGLRLKTIKHV FT NELFTDDKPPEKEEQVDKTDKQDKKTPEEKIDDTVVVDKTEDAKENLEEFALKAVVYQP FT LSRLEDEKIFNNMIKYYESKGLTQRQAELLIYQMGVSFCTSVNSCANSNLHLIVSKPDG FT SLLKVSKSDHVMRMQMLCKKYCNVERTLLRNRSDKIFRLLKAKVLVLPLKHARVRGIKP FT EMAHMACDFMDYTTIPLSDEEVLALNSMQRFVLMRNKHRRSIVNVNQLF" FT CDS 7297..8025 FT /codon_start=1 FT /product="p28" FT /db_xref="UniProtKB/TrEMBL:G3EHJ2" FT /protein_id="AGE15470.1" FT /translation="MSGWDDIHMQQDYVSSSVRNDDDIAKICARTFNRAVNLLTDYPQH FT TIPELRESRFELGCIRSLCENDDFNINLGADNNNLFQGLNKLGVRADSLRVNSERFFPS FT ISSKVMTNVIDSISSVMEFVIDLNHSGFSTLWVGEIMTIYDVNSFDKLVDAIYRFLLYT FT YNFPEEVQFHMTLNLFNDDILKIISKAKKKIRPLSDSERVLMAKSITKGIHFEFHFTYR FT SLGLYLPKVTNSLTVCNKNR" FT 3'UTR 8026..8217 XX SQ Sequence 8217 BP; 2537 A; 1342 C; 1709 G; 2629 T; 0 other; gaaatactac ccaggttttt ccatgagtta tgcttttagc ttaagctcat atcattggtt 60 gtcgtcatga ctcgcatttt tgcgatgaat gactcaatct attcgggagt ctatgggact 120 ttgtaatccg agaactcgca tcagtgtgac gtattggatg caaagtgact gcccgtcata 180 tcttttactt ttctgcgttt ataaatcaaa aacccaaaaa tatatcttct ctccataaga 240 gagtacctaa tataatacct agctcagccc actaaacgaa acagaatatt ttgagcgata 300 aaaaaggtaa caccaatggg ccggtagtta tcgaagtttt gatgggttta ttcaaaccca 360 tcctccctta taaggggtct tacgataccc ctatagcccc cgttatctag taaatacgta 420 tatattgtga atagttttac ttttgttgat agttcttctt cagattttat cttaatgttg 480 atattgtgat tactgtttat taggaagtaa tttcttatta gatgttttac agttttatcg 540 ttggtgttta tatatggtat gtcatatttt taagtttgga ttttcccttt atttttcttt 600 tttagaatat tgtctagact atatgttaat agtttgtttt ttgttatcag catatagtat 660 tttttgcgat tacttgtttt ctttaagtat taacttatta aatatattat gattttctct 720 tttgtatttt ttcccggtcg ttttaatatt tttattaggt tgttatcttg atgattatat 780 gttagagtat ttgttagact atgtagtata gtcttctttt gagtgtctat ctgttagttt 840 tctttcttga ttctattgac ttcgttgttt atgtttatac tgttagtttt gaagctcaca 900 tacgtttact tctcttcaat tgtttagtta atatattttg agtattcttt aattctttca 960 ttcccttttt cttcttttgt attatggagg ctaaagctgg tttagacttt ggtaccacct 1020 tcagcactat ctccgcgtac gtcggaggta cgatgaaggt ccttagaata aacgggtcgg 1080 agtttattcc cacctgttta tctgtcacgg ctacaggcga cgtggttgtt ggtggggctg 1140 cccaggtttt ggattcttcg caattacccc attgctattt ctatgactta aaacgttggg 1200 ttggtgttga taggttgtcc tttgaagaaa taaaacgtaa gatatcccca cagtatacgg 1260 tcagattgga aggtaatgat gtgctaataa caggaatctc gaaggggttt tcttgtacat 1320 atactgtgaa acagctcatt cttctctatg ttgacacctt ggtcagacta ttctcaaatg 1380 ttgaaaagtt gaagatcctg agtttaaatg tgtcagttcc cgcagattac aaaaccaagc 1440 aacggatgtt tatgaaatct gtttgtgagt cgctcggttt tccgttgaga aggatcataa 1500 acgaaccttc cgccgcagct atttactcga tatcaaagca tcctggcttc gactatttct 1560 tagtctatga ttttggagga ggtacctttg atacttcttt gatagcgaag gacgggaaat 1620 ttgtcactgt ggcagatacc ctgggagact cgtttctggg tggtagagat atagatcgtg 1680 cgattttgtc acatattatg cgtacgaaca gtcttcagaa gccgttgtca gcagattcac 1740 ttgcggcaat taaagaagaa gttaactcca ctggtaggag taatttcaat gttttggacg 1800 tcgacggtag cattatcttt gtgaactttt cgggtgagga attagacaag atagtttcga 1860 agtttactgc taagagtttg aagatactta aagcaatagc agataggaat aaaatcactt 1920 ctggggctct tttcttggta ggaggatctt cgttacttag aaaagtccaa ttagatgtta 1980 gtaattttgc taaatctatt ggacttacgc caattatcga taaagacttg aggtctgcag 2040 tgtcctacgg ctgttccatg atgcatgccc aagaggacag tggttctatg gtttacatag 2100 attgtaactc acatcctttg atggatgtgt ccttgtttgc taatccaaga gtcataattc 2160 ggaagccaat gtctgttcct ttctcatata aaactaccag aaaagttgat cgacacatga 2220 tgactgctgt aaatgtgtat gaaggatcca gtcttttcgt gttagataat gactggcttg 2280 ttagtgctaa tgtgaacaca caagattttg tagatttagg gcaagaacta tcgtatgtgt 2340 ataaatataa tgttgatggt attcttgacc tttttgttcg aaacgaatca actggagtcg 2400 agagtctgtt gcctaactca tttgccttga ctgaaaaggt aaagaagtta gatttgaacc 2460 tgacacaact gtcaagtgtt gacgaattgg caacagttgt ctccattctc agtcattttg 2520 attcgagttt tagtagtctc ttaaagttgg tcaatactcc atccattttt gaaacgtcag 2580 ctgcaaaatt cggtgactta agatcattgt atgaacgttt gatcttcgtt aataagaact 2640 tttcttgagc tttcttcgtt tttctaataa tgtcacagtc tataatcgat agtgattttg 2700 tgactgaaac attcagatat gcttttaaga agactgatgt tagagataaa ttggaaagac 2760 ttaatgaagt catgaaagat aatttagacc agatcaatag gactaagtat tctttcaatt 2820 ttcaaggaca gacctacaat ctttcatcga attatcaggt taggaacggg gtcgttcatg 2880 tgaatactga ggctccttta gaggttttga agcttttgtc tgtatatatg tattatgtgg 2940 aaccaaagta cattgatatg tcaccttaca gtcctgaatc tttattcggt aatccgaatt 3000 atatgaaggc tgttaagatg tggaagcctt actatgacaa gtcgatgaac gagtatttga 3060 atgatagaag tgaggttggg tgtttataca ccatggacga catagacaag aactatccta 3120 cactgagtca aacgaggaaa attactctat atagagtttg caattcctta ggaaaactcg 3180 tggacctaaa agagcttagt gccggtgtac ttaaagcttt tgaggtcaaa acttctgacg 3240 tcggtcaagc agtcatgacg acaactacca acaatgcact ctttggtgag tgtgtcaagg 3300 tgttcaaaga ttttatagtt ctcaattcta caaaggctgg gaaagaaaag atagaggtta 3360 atagaaagtt tttgaactct ttcctgcaat gtctgtctcc aaaggacgaa ctcggtaatc 3420 taggcggaaa tccgttgcta atcgcctggt ttatgcgaga attcaccaac cgtacaaaga 3480 acagtaaggg ttataaggac aattttaagg ctgtggtaga tttgagtcaa ccaatgctta 3540 agtttctcaa ggacgtgttc ttaaaagatc tgagtctaga tgaagactct ctattcataa 3600 cttttcctaa gaactctgta gtggagatag tcgatcaagt gataccgcta gctaaatttc 3660 ataggaatca agcactccca aaaccaatga gtaattcttg cgatttacct agggacgttg 3720 acgaattggt ttctaaaacc atcgcagaat atttgggtaa attcgtcaag actgatgaag 3780 atttgttgct agatgccttt cttttcgtat taggcagatg tacgacgaat cagaagcgtt 3840 ggacttccgg ttttgaaata gattttaaaa ttttgggtga tagaatcaag tttgattcca 3900 aagatttatg gtatcatcta gtcaatgttg ttcgtacaaa ccatccgcgg tttagaacga 3960 ataatttgat tagacagtgg gccaacaata gaggtgatag agccagggca atgtttaaaa 4020 tttgtgagta ccaccctgga ctgtttggta gtatccccag aatagacaat cacatgcggt 4080 tcgatttctt taagttgttg aatttacgat tgatgtctga gtcggaaaaa atgtcttatt 4140 acacactccg tcttatgact gagagtaaat cgaataacag tgataaagat ttttgtaagt 4200 tggtttcatg gatttcagtg aactgattga gaagtatgga gttgagagga tttcttcttt 4260 gacgtctaga ttgttagaaa taaaaagaac tggagtcggt ctcgtgaatt tgttgctaaa 4320 tctggttaat gagaatttta ttcacttcga ctcaaatagg tctccgtgtg ggtttgaaaa 4380 agaggatcac gatcttattt tacaaataat tcctttattg cgtatttgag gtttgttctt 4440 tatattatca taacttaaca gatggctact gacaaagtaa acgatgacaa gaactttgac 4500 tctgactccg atgtaggttt cggggacggg aatgtgaacg ataatctacg aagacgttcc 4560 gatacgattg acaacgaaaa cgtcaacaat gtgggaagaa gagacatgga gttaaccagt 4620 ggtatattaa catctgagca actggctctt gcgaggttgg gaaaaataca ggtttattct 4680 aactcaccag acattatgtc taagagtcaa gaagatgaat tcaagagaca tatggagagt 4740 tttttgaagc aaattacagg ggaaactaca ttatcttctg agatttttgc aggtttctac 4800 gcatctctat tccaagcttg ggcaaaccaa agtacttcgg aaaagaacgc gtcgaatgca 4860 aatctcgaga atatgttcat ggttgatggt aaggagtaca gttggagaac tcatagtttc 4920 atcaatcaca tgcaatccaa tatgcccgac gtgaagaatg ctgctaggaa atgggccagg 4980 gctcacgcga atgattataa ggttcttgtt ggtttgggta tagtaaaacc tgactatcat 5040 ttgcaagcta aacaaggtgt attaccggag tattggcatc ttgcaaccga cttcatgaga 5100 ggtaatgaca tggcgacgac tgcagatgga ttagcagcaa cactgatgat gaaaaggaac 5160 gctctttgta acaaggacaa caagaattct atttataacg taactcaatt gaccggtact 5220 ggtcttcact gttgagtatg gatatattag aactagaagt ggataacatt atatcgacaa 5280 attatcccga tgatgaatcc gaaatagtga ctagagctgt gggatgtaag ttcaatcaag 5340 attattctct accttataaa gatagagaac aagtcgactt ctctatacct tacacttccg 5400 cgttaagaag taaacctgtc actttagaac tatattttca tataggatcc gggtatgttg 5460 tgtatacttg taaacccgcc gataacttca accaaaagat atatgagtcg aatttgggat 5520 cattcttctc atcttttagg aatctcgtca ctcccagaag accgcgtggt atgaacgcat 5580 ttagatttgg ttatttgaga gagggaaacg actgctttat aatagttgaa ggttggagag 5640 tcgtgcagat atcaaatgcc aacactatat tcggcgtttc attgaggttg tcgttagaca 5700 ttggcgacgt aatcttcagc aagtccgaca aactaagtgc caatcaaatt gctctagatt 5760 cgtgtttaga atgtactaga ccagatggtt tgttgaaagg ggccaaaccg aaaagtgtta 5820 acatattctc tgagacaacc caagaaagtg tgaaagtaac accaattgga gacattccat 5880 taagtgtttt caattcagta accgatctca atctaaaaat actgagaagt ggtgacgatt 5940 ctacatcgat taaagatgag actcagattg acaaagaccg tactacaatg agtaatgaag 6000 aagataaaaa gaaaatcttc cgcatttatt actcaaattt cttagacaat ggttttaaga 6060 attctttaaa ctacactata ctttggccgc agatatcatg taacggtgta gatgtaaatc 6120 accaattttg gatcggtgac agagaagata tgttggaggg aggtgtacat tatatacaca 6180 ccacatcgac caatacgata ttcttcgtac atcgtaaggg gaacgtttca gaatatttta 6240 aaataaacga agatcaatct gccaggatac tgaagactat accaactgaa ctcaccttca 6300 gtatagtcaa aaatcctgga agtaagtatg tggtgtatgt caatggagaa aaatttttaa 6360 gtacatttct gcctaatgtt ggtaccaaag tccaaatagg ttgggaaata aagttgtaca 6420 aagataaggt aaaaagtttt gagaagtcca atttgaaaac tttcgaaatt gttcctagag 6480 aaacgcaagt taagtcagat aatgagcttg tgacactaag aaaatatgag tttggaacaa 6540 cagatttcaa tgctagtgga tgggtacttg aaaagaagtt ggggctgaga ttgaaaacaa 6600 ttaagcatgt caacgaactt ttcaccgatg acaaacctcc tgagaaagaa gaacaagtcg 6660 ataagacgga taagcaagac aagaaaacac ccgaagaaaa gatcgacgac accgtagttg 6720 ttgacaagac agaggatgcg aaagaaaact tggaagagtt cgcactcaaa gccgttgttt 6780 atcaaccact atcaaggtta gaagatgaga aaatcttcaa caacatgatt aaatattatg 6840 aaagtaaggg attaactcaa agacaagccg aattactcat ctatcaaatg ggagtttcct 6900 tttgtacgag tgttaacagt tgtgcaaatt ccaacctaca tttaattgta tctaaaccgg 6960 atggaagttt gctcaaggtg tctaagtccg accacgtaat gaggatgcaa atgttgtgta 7020 agaagtactg caacgttgaa agaacgttac ttagaaatag aagtgataaa atattcagac 7080 ttctgaaggc taaggtacta gtcttaccac tgaaacatgc tagggtcaga ggtataaaac 7140 cggaaatggc acatatggca tgtgatttca tggactacac caccatccca ttgagtgatg 7200 aggaagtcct tgcattaaat tcaatgcaaa gatttgtatt gatgagaaat aagcaccgca 7260 ggtccatagt aaatgtgaat caactgtttt gaaaatatgt cgggctggga tgacatacat 7320 atgcaacaag attatgtttc ttccagcgtt cgtaatgatg atgacattgc gaagatatgt 7380 gccagaacat ttaaccgagc agttaattta ttaactgatt atcctcaaca tactattccc 7440 gaacttcgag aaagcagatt tgagttggga tgtatccgaa gtctgtgtga aaacgatgac 7500 ttcaatatca accttggagc agataataac aatcttttcc aaggattgaa caaattgggc 7560 gttagggccg actcacttag agttaacagt gagaggttct tcccctcaat atccagtaag 7620 gtgatgacca acgtgataga ttctatttcc tctgtgatgg agtttgttat agatcttaat 7680 cattctgggt tttcaacctt atgggttggt gagatcatga ccatatatga tgtcaacagt 7740 tttgacaaac tggtagatgc tatatatagg tttttattat acacctacaa cttccctgag 7800 gaagtgcaat ttcatatgac cttgaatttg tttaatgacg atattttaaa aataatatca 7860 aaagcaaaga aaaagatcag acctcttagt gatagtgaga gggttttaat ggctaaaagt 7920 attactaaag ggattcattt tgaattccac tttacttata ggtctttagg tttatatctt 7980 cctaaagtaa ctaatagttt aacggtttgt aataaaaatc gataaagata ttagggtaga 8040 tttgattaat gtttataccc tagagtcata cacctgagag attcggagtg tgtattgtaa 8100 aaactcaaaa aatatatgtt tcttatacgt atttctattt agagtgtgtg tatgaacggt 8160 tttcctaaat cgtcgtgaga cggaccttgg aaaacctagt atttaaataa ctaggcc 8217 //