ID KC119190; SV 1; linear; genomic RNA; STD; VRL; 5810 BP. XX AC KC119190; XX DT 03-FEB-2013 (Rel. 115, Created) DT 03-FEB-2013 (Rel. 115, Last updated, Version 1) XX DE Turnip mosaic virus strain BJ-C1, partial genome. XX KW . XX OS Turnip mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-5810 RA Yao L., Zeng G., Ye Y., Cao M., Ma R.; RT ; RL Submitted (01-NOV-2012) to the INSDC. RL Beijing Agro-Biotechnology Research Center, Beijing Academy of Agriculture RL and Forestry Sciences, 9 Shuguang Huayuan Zhonglu, Beijing, Beijing 100097, RL P.R. China XX DR MD5; c93cbd11b4974b1b553feaa4af84fd1a. XX FH Key Location/Qualifiers FH FT source 1..5810 FT /organism="Turnip mosaic virus" FT /host="cruciferous plants" FT /strain="BJ-C1" FT /mol_type="genomic RNA" FT /country="China:Beijing" FT /note="isolated around 1985-1987" FT /db_xref="taxon:12230" FT CDS <1..5601 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:L7XE77" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR011545" FT /db_xref="InterPro:IPR013648" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:L7XE77" FT /protein_id="AGD80387.1" FT /translation="GKIAHESDRDILLMGAVGSGKSTGLPYHLSRKGNVLLLEPTRPLA FT ENVHKQLSQTPFHQNTTLRMRGLTSFGSAPISVMTSGFALNYFANNRTRIEEFDFVIFD FT ECHVHDANAMAMRCLLHECDYSGKVIKVSATPPGREVEFSTQYPVTISTEDTLSFQDFV FT NAQGSGSNCDVISKGDNILVYVASYNEVDTLSKLLVERDFKVTKVDGRTMKVGNIEITT FT SGTPSRKHFIVATNIIENGVTLDIDVVADFGTKVLPYLDTDNRMLSTTKTSINYGERIQ FT RLGRVGRHKPGHALRIGHTEKGLSEVPSCIATEAALKCFTYGLPVITNNVSTSILGNVT FT VKQARTMSVFEITPFYTSQVVRYDGSMHPQVHELLKRFKLRDSEIVLNKLAIPNRGVNA FT WLTASEYARLGANVEDRRDVRIPFMCRDIPEKLHLEMLDVIVKFKGDAGFGRLSSASAS FT KVAYTLQTDVNSIQRTVTIIDTLIAEERRKQEYFKTVTSNCVSSSNFSLQSITNAIKSR FT IMKDHTCENISVLEGAKSQLLEFRNLNADHSFTTKSDGISRHFMSEYGALEAVHHQNTN FT DMSKFLKLKGKWNKTLITRDVLVICGVLGGGIWMIIQHLRMKISEPVTHEAKGKRQRQK FT LKFRSARDNKMGREVYGDDDTIEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPE FT DFSAVRFVDPLTGATLDDNPFTDISLVQKHFGDIRMDLLGEDELDPNELRMNKTIQAYY FT MNNKTGKALKVDLTPHIPLKVCDLHATIAGFPERENELRQTGKAQPINIDEVPRANNEL FT VPVDHESNSMFRGLRDYNPISNNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNG FT ELIIKSRHGEFVIKNTTQLHLLPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMV FT GSNFQTKSITSIVSETSTIMPVENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLAN FT FQNSINYFAAFPDDFAEKYLHTIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSK FT LISDLDSTAVYAQTQQNRWMFEQLNGNLKAIAHCPSQLVTKHTVKGKCQMFDLYLKLHD FT EAREYFQPMLGQYQKSKLNREAYAKDLLKYATPIEAGNIDCDLFEKTVEIVVSDLRGYG FT FETCNYVTDENDIFEALNMKSAVGALYKGKKKDYFAEFTPEMKEEILKQSCERLFLGKM FT GVWNGSLKAELRPLEKVEANKTRTFTAAPLDTLLGGKVCVDDFNNQFYDHNLRAPWSVG FT MTKFYCGWDRLLESLPDGWVYCDADGSQFDSSLSPYLINAVLNIRLEFMEEWDVGEVML FT RNLYTEIVYTPISTPDGTLVKKFKGNNSGQPSTVVDNTLMVILAVNYSLKKSGIPSELR FT DSIIRFFVNGDDLLLSVHPEYEYILDTMADNFRELGLKYTFDSRTREKGDLWFMSHQGH FT KREGIWIPKLEPERIVSILEWDRSKEPCHRLEAICAAMIESWGYEKLTHEIRKFYAWMI FT EQAPFSSLAQEGKAPYIAETALRKLYLDKEPAQEDLTHYLQAIFEDYEDGAEACVYHQA FT GETLDAGLTDEQKQAEKEKKEREKAEKERERQKQLALKKGKDVAQEEGKRDREVNAGTS FT GTFSVPRLKSLTSKMRVPRYEQRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVM FT ADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFR FT QIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREA FT HIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHNLLGVKGL" FT mat_peptide <1..1719 FT /product="CI protein" FT mat_peptide 1720..1878 FT /product="6K2 protein" FT mat_peptide 1879..2454 FT /product="VPg protein" FT mat_peptide 2455..3183 FT /product="NIa protein" FT mat_peptide 3184..4734 FT /product="NIb protein" FT mat_peptide 4735..5598 FT /product="coat protein" FT 3'UTR 5602..5810 XX SQ Sequence 5810 BP; 1843 A; 1212 C; 1405 G; 1350 T; 0 other; ggtaaaatag cacatgagag tgatagagat atactcctca tgggggcggt ggggtcaggc 60 aagtcaactg gtttaccata tcacctttct agaaagggga atgtattgct tctcgaaccc 120 actcgaccac tcgcagaaaa cgtgcacaag caattgtcgc agacaccatt tcatcaaaac 180 acgactcttc gaatgcgcgg attgacatcg tttggatcgg caccgatctc ggtgatgact 240 agtggtttcg cacttaacta tttcgcaaac aatcgaacga ggattgaaga gtttgacttt 300 gtcatattcg atgaatgtca tgttcacgac gctaatgcaa tggcgatgag atgtttgcta 360 catgagtgcg actactccgg caaagtcata aaggtttccg ctacaccacc aggtcgcgag 420 gttgaattct ccactcaata tcctgtaaca attagtacag aagacacatt gtcatttcaa 480 gactttgtga atgcacaggg tagcggaagt aactgcgacg tgatctcaaa aggagacaac 540 atccttgtat acgtggcaag ctacaacgag gtggacacac tttcaaagct tctagtcgag 600 cgtgatttca aagttacgaa agttgacgga agaacaatga aagtcggaaa tattgagatc 660 accacgagcg ggacacctag taggaaacac ttcatagttg caaccaacat tattgagaac 720 ggggtcaccc tggacattga tgttgttgct gactttggaa caaaagtact cccgtatctt 780 gacacggata atagaatgct tagtacaacg aaaacaagca ttaattatgg ggagcgaatc 840 cagaggctag ggagagttgg aagacacaag ccaggccacg ctctgagaat tggccacacg 900 gagaaagggt tgagtgaagt tccaagctgc attgcaacag aagcagccct aaagtgtttt 960 acgtatggac ttccagttat aaccaacaac gtgtctacaa gcattctagg caatgtaacg 1020 gtgaaacagg cacgaacaat gtctgtgttt gaaataacac cgttctacac aagccaagtg 1080 gtgagatatg atggctcgat gcatcctcag gtccatgagc ttttgaagag gttcaagctt 1140 agagattctg aaattgtctt gaacaaatta gccataccta accgaggagt aaatgcttgg 1200 ctcacagcta gtgagtatgc acgacttggt gcaaacgttg aggacaggcg tgacgtacgg 1260 atccctttca tgtgtcgaga catcccagaa aaactccatc tagagatgtt ggatgtgatt 1320 gtcaagttca aaggcgatgc aggtttcggg cgactttcaa gcgccagcgc aagcaaggta 1380 gcttacacct tgcaaacaga cgtcaactct atccagcgaa cagtcactat tatagataca 1440 ctaatcgctg aggagagaag gaagcaggag tacttcaaaa cagtgacctc caactgtgtc 1500 tcttcttcaa acttctcact acagagcatc acaaatgcca taaaatctcg tataatgaaa 1560 gatcatacgt gcgagaatat atcagtgctt gaaggagcaa agtcacagtt actcgagttc 1620 agaaacttaa acgctgatca ctcgtttact actaagtccg acgggatttc tcgccatttt 1680 atgagtgaat atggagcgct cgaggcagtt caccatcaaa acaccaacga catgagcaag 1740 ttcttaaagc tgaagggcaa atggaacaaa acgcttatca cgcgtgatgt gttagtgatt 1800 tgtggagttc ttggaggcgg aatatggatg atcatccaac acctgcgtat gaagatttct 1860 gagcccgtaa cccatgaggc aaaaggcaag aggcagagac aaaaactgaa atttcgcagt 1920 gctcgtgata acaaaatggg tagggaagtg tatggggacg acgacaccat agagcatttc 1980 tttggagatg cttacacaaa gaaaggaaag agcaagggca ggacacgtgg ccttgggcac 2040 aaaaacagga aattcattaa catgtatggg ttcgatcctg aagatttctc tgcagtcagg 2100 ttcgtagatc cactcacagg agcgacgtta gatgacaacc cattcacaga catctccctt 2160 gtacaaaagc actttggaga cataagaatg gatttactcg gagaggacga gctagaccca 2220 aatgagctac gaatgaacaa gacaattcaa gcctattaca tgaacaataa aacaggtaag 2280 gctttgaagg tggatctgac accacacata cctctcaaag tgtgtgatct tcacgcgacc 2340 attgctggat tcccagagcg agaaaacgaa ctcaggcaga ctggaaaggc tcagcccatt 2400 aacatagacg aagtgccaag agccaacaac gagctcgtcc cagtggacca cgagagtaat 2460 tccatgttca gagggttgcg tgactacaac ccaatatcaa acaacatttg tcatctcaca 2520 aatgtttcag atggagcatc aaactcgtta tatggagtcg gtttcggacc actcatatta 2580 acgaaccgac atctctttga gcggaataac ggtgaactca taataaaatc acgacatggt 2640 gagttcgtga ttaaaaacac aactcagtta cacttgttac cgattccaga cagagatctt 2700 ctactaatcc ggttaccaaa agacgtccca ccctttccac agaaattggg tttcaggcaa 2760 cctgagaaag gtgaacgaat ttgcatggtg gggtccaatt tccaaaccaa gagcataacg 2820 agtatagtct ctgagactag cacaataatg ccagtggaga acagtcagtt ttggaaacat 2880 tggattagca caaaagacgg ccaatgcgga agtccaatgg tgagcacgaa agacgggaaa 2940 atacttggat tacacagtct agcgaacttc cagaactcca tcaattactt tgctgctttc 3000 ccagatgatt ttgccgagaa gtaccttcat accattgaag cacacgagtg ggtcaagcat 3060 tggaagtata acactagtgc catcagttgg ggctctttga atatacaagc gtcgcaaccg 3120 tcaggcttgt tcaaagtaag caaactaatc tcagaccttg acagcacagc agtctacgca 3180 caaacccagc aaaatcggtg gatgttcgag cagctcaatg ggaacctgaa agcgatagca 3240 cactgcccta gccagcttgt gacaaagcat acggttaaag gaaaatgtca gatgtttgac 3300 ttgtatctca agttgcatga tgaagcacga gagtatttcc aaccgatgct gggccagtat 3360 caaaagagca aactcaatcg agaagcatat gcaaaggatc ttctgaaata tgcaacgcca 3420 atcgaagcag gaaacatcga ctgtgatctg tttgaaaaga cagttgaaat agtcgtatca 3480 gacttgcgag gttatggttt cgaaacatgc aattatgtca ctgatgagaa tgacatattc 3540 gaagctctta acatgaaatc cgcagttgga gcgttgtata aaggaaagaa aaaggattac 3600 tttgcagagt tcacacccga gatgaaagaa gaaatactga aacaaagctg tgaacggctc 3660 ttcttaggaa agatgggagt gtggaacggc tcactgaagg cagagttacg accactagaa 3720 aaagtggaag caaacaaaac acggacgttc actgctgcac cactagacac attattgggt 3780 ggaaaggttt gcgtggatga tttcaacaac cagttctatg atcacaacct tagagctcct 3840 tggagcgttg gtatgacaaa gttttattgt ggttgggatc gcttgttgga atcgttgcca 3900 gatggttggg tgtattgcga tgctgatggc tcacagtttg acagctcgct gtcaccatac 3960 ttgatcaacg cagtactcaa catccgctta gaattcatgg aagagtggga cgtaggggag 4020 gtaatgctga gaaatttgta cactgaaatc gtgtataccc ctatctctac accagatggt 4080 acactcgtta agaaattcaa aggaaacaat agcggacagc catcgactgt tgtagacaat 4140 acgctcatgg tcatattggc agtcaactat tcactcaaga aaagtggaat tccgagtgag 4200 ttgcgcgaca gcatcatcag attcttcgtc aacggagatg acctactgct aagcgtacac 4260 ccagagtatg agtacatcct tgatactatg gcagacaact ttcgtgaact gggtctgaag 4320 tacacttttg actcaaggac cagggaaaaa ggagaccttt ggtttatgtc gcaccaaggg 4380 cacaaaagag agggaatttg gattcccaag ctcgagccag agcgaatagt atcgattcta 4440 gaatgggatc ggtcgaaaga gccatgccat cgactagagg caatctgcgc agcgatgatt 4500 gagtcgtggg gatacgagaa attaacccac gaaatacgca aattttacgc gtggatgatt 4560 gaacaagctc cattcagctc cctagcacaa gaagggaaag ctccttacat agcggaaaca 4620 gcgctgagga agctctacct tgataaggaa ccagctcaag aggatctcac ccattatttg 4680 caagcaatct ttgaggatta cgaagatggt gccgaggctt gtgtttatca ccaggcaggt 4740 gaaacgcttg atgcaggttt gacagacgag caaaagcagg ctgagaagga gaagaaggag 4800 agagagaagg cagaaaagga acgagagagg caaaagcagt tggcactcaa gaaaggcaag 4860 gacgttgcac aagaagaggg aaaacgcgac agggaagtaa acgctggaac ctctggaact 4920 ttcagtgtac ccagactcaa gagtctgaca agcaagatgc gcgtaccaag atatgaacaa 4980 agagtggctc taaacctcga tcatctaatc ctatacacgc cggagcagac ggatctatcc 5040 aacacacgtt caacgcgaaa gcagtttgac acatggttcg aaggtgtaat ggctgattac 5100 gaactaacgg aggacaaaat gcaaatcatt ctcaatggtt taatggtctg gtgcattgag 5160 aatggaacct ccccaaacat aaacggaatg tgggtgatga tggacggcga tgatcaggtg 5220 gaattcccga tcaaaccgct cattgaccac gccaaaccca catttaggca gataatggcc 5280 catttcagtg acgtagctga agcgtacatt gaaaagcgta accaagaccg accatacatg 5340 ccacgatatg gtcttcagcg caatttaacc gacatgagct tagctcgata cgcatttgat 5400 ttctatgaaa tgacttctag gactccaata cgtgcgagag aagcacacat ccagatgaaa 5460 gcagcagcac tgcgtggcgc aaataataat ttgttcggct tggatggaaa cgttggtaca 5520 acggtagaga acacggagag gcatacgacc gaggacgtta atcggaacat gcataactta 5580 cttggcgtta aggggttatg aagttgtatg ctggtagact ataagtattt aagtttactc 5640 gttagtattc tcgcttatgg gaaatatgta agtttgttaa agcagccagt gtgacttcgt 5700 catgtgtgtt gttgttactt tctatatttt cgccgaacat tttattggtg ttagcgcatg 5760 tggtgaggat cgtcctcgat tgccttaaca tttgatagga tgcaagggac 5810 //