ID   KC113506; SV 1; linear; genomic RNA; STD; VRL; 1246 BP.
XX
AC   KC113506;
XX
DT   03-FEB-2013 (Rel. 115, Created)
DT   03-FEB-2013 (Rel. 115, Last updated, Version 1)
XX
DE   Bermuda grass southern mosaic virus isolate Shushtar polyprotein gene,
DE   partial cds.
XX
KW   .
XX
OS   Bermuda grass southern mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus; unclassified Potyvirus.
XX
RN   [1]
RP   1-1246
RA   Masumi M., Farahbakhsh F., Afsharifar A., Izadpanah K.;
RT   "Genetic variation of Bermuda grass southern mosaic virus isolates based on
RT   sequence of 3' region of genome";
RL   Iran. J. Plant Pathol. 49:0(2013).
XX
RN   [2]
RP   1-1246
RA   Masumi M., Farahbakhsh F., Afsharifar A., Izadpanah K.;
RT   ;
RL   Submitted (31-OCT-2012) to the INSDC.
RL   Plant Virology Research Center, Collage of Agriculture, Shiraz-Isfahan
RL   Road, Km15, Shiraz, Fars 71441-65186, Iran
XX
DR   MD5; 9862a3abc825dce91399ffc88352d099.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: Vector NTI v. 9.0
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1246
FT                   /organism="Bermuda grass southern mosaic virus"
FT                   /host="Bermuda grass"
FT                   /isolate="Shushtar"
FT                   /mol_type="genomic RNA"
FT                   /country="Iran"
FT                   /collection_date="2007"
FT                   /PCR_primers="fwd_name: bjpf1_forward, fwd_seq:
FT                   gatcttccagattatttggctgayg, rev_name: bjpr1b_reverse,
FT                   rev_seq: cggttaagtttcgctgaagtcc"
FT                   /db_xref="taxon:1285466"
FT   CDS             <1..1014
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains coat protein and NIb protein"
FT                   /db_xref="GOA:L7XFZ7"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:L7XFZ7"
FT                   /protein_id="AGD80070.1"
FT                   /translation="DLPDYLADEVIDVKHQAGENVDAGQETEAQKEAKKKAAEEKKARE
FT                   TEAKRKQEAETKQKADEEARERQRVKEAADKKKAEDDAKKKAAEKPSGSGSAEKDKDVD
FT                   AGTLGSMTVPKLKAMSKKMRLPQAKGKNILHLDFLLQYKPQQQDLSNTRATKAEFDRWY
FT                   EAVQKEYELDDTQMTVVMSGLMVWCIENGCSPNINGVWTMMDGDEQRTFPLKPVIENAS
FT                   PTFRQIMHHFSDAAEAYIEYRNSTEKYMPRYGLQRNLTDFSLARYAFDFYEMSSRTPAR
FT                   AKEAHMQMKAAAVRGSNTRMFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQGH"
XX
SQ   Sequence 1246 BP; 426 A; 236 C; 305 G; 279 T; 0 other;
     gatcttccag attatttggc tgacgaggtt atagatgtta aacatcaagc tggtgagaat        60
     gttgatgctg gacaggaaac tgaagcacag aaagaagcaa agaagaaagc ggctgaagag       120
     aagaaagcaa gagaaactga agcaaaacga aagcaagagg ctgaaacaaa gcaaaaggca       180
     gatgaagaag ccagagaaag acaaagagtc aaggaagcag ctgacaaaaa gaaggctgaa       240
     gatgatgcta agaagaaagc tgctgagaag cccagtggga gtggatccgc agaaaaggac       300
     aaagacgtgg atgctggaac tttgggttca atgacggtac ctaagcttaa agctatgtcc       360
     aaaaagatgc gtttgccaca ggcaaaagga aagaacattc tccatcttga ctttctcttg       420
     caatacaaac cacaacaaca agatttatca aacacacgag caaccaaggc tgaatttgat       480
     agatggtacg aagcagtgca gaaagaatac gaacttgatg atacacaaat gacagttgtc       540
     atgagtggat taatggtttg gtgtattgaa aatggttgct caccgaacat caatggtgtc       600
     tggactatga tggacggaga tgaacagaga acatttcctt taaaaccagt tattgaaaat       660
     gcatctccaa ctttcagaca aattatgcac cactttagtg atgcagctga agcatacatc       720
     gagtacagaa actcgacaga gaagtatatg ccaagatatg gacttcagcg aaacttaacc       780
     gactttagcc ttgcacgcta tgcatttgat ttttacgaga tgtcatctcg cactccagca       840
     cgtgcaaagg aagcccacat gcagatgaag gccgcagcag ttcgtggttc aaacacacga       900
     atgttcggtc ttgatgggaa tgtcggagag acccaagaaa acactgaacg ccacacagct       960
     ggcgatgtca gtcgcaacat gcactccctc ctgggagttc agcaaggaca ctgaagcggg      1020
     gtcgaacttt tacgcagtaa tttagtaata cataaataaa ctattgtggt gaggttctac      1080
     ctcgttagtt ttatttatat attatgctat gtacctacta tgtctgcaag tgagtgaggt      1140
     tacacctcga cacttatagt gggcactatt actagcttcg aatcacgaga cggacgatct      1200
     attgagtggt tctaccacga ggatgcagcg agtttcgtgg tgagag                     1246
//