ID   KC108904; SV 1; circular; genomic DNA; STD; VRL; 2974 BP.
XX
AC   KC108904;
XX
DT   23-DEC-2012 (Rel. 115, Created)
DT   23-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE   Turnip curly top virus isolate IR:Hom:H8:Tur:12, complete genome.
XX
KW   .
XX
OS   Turnip curly top virus
OC   Viruses; Geminiviridae; Turncurtovirus.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-2974
RX   PUBMED; 23225113.
RA   Razavinejad S., Heydarnejad J., Kamali M., Massumi H., Kraberger S.,
RA   Varsani A.;
RT   "Genetic diversity and host range studies of turnip curly top virus";
RL   Virus Genes 0:0(2012).
XX
RN   [2]
RP   1-2974
RA   Heydarnejad J., Varsani A., Kamali M., Razavinejad S., Massumi H.,
RA   Kraberger S.;
RT   ;
RL   Submitted (29-OCT-2012) to the INSDC.
RL   Plant Protection, Shahid Bahonar University of Kerman, 22 Bahman Ave,
RL   Kerman, Kerman 7616914111, Iran
XX
DR   MD5; fd3c3893c88db3c9af4cd8b3e1b497a0.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN 5.2.6 v. 5.2.6
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2974
FT                   /organism="Turnip curly top virus"
FT                   /host="Brassica rapa var. rapa"
FT                   /isolate="IR:Hom:H8:Tur:12"
FT                   /mol_type="genomic DNA"
FT                   /country="Iran:Homayejan, Shiraz, Fars"
FT                   /collected_by="M. Kamali"
FT                   /collection_date="2012"
FT                   /clone="H8"
FT                   /db_xref="taxon:859650"
FT   CDS             233..607
FT                   /codon_start=1
FT                   /product="V2"
FT                   /db_xref="UniProtKB/TrEMBL:I3UI97"
FT                   /protein_id="AGA19563.1"
FT                   /translation="MIWRVNKDEKRVRAFRYKKRRFYSLAEYLLAPLATHLCKARIFPD
FT                   DKYLVPAYTDEAYSFLVFLKEETRTPFQILKDEWNVEFKEIEVELSRLRFGPKDPGEEA
FT                   CSEESPVQQSSPVQSSSCET"
FT   CDS             462..1292
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="V1"
FT                   /db_xref="GOA:D8WZ33"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:D8WZ33"
FT                   /protein_id="AGA19564.1"
FT                   /translation="MSGTWSLKRSRWNSPGYDLAPKTPAKRPAVRRALFNNQVQYSRVA
FT                   ARRRWSKVSVRGNKPYRSRRLKASDYQIYKDKIGGDNGWTVTFSGDCTMLNNYVRGIGR
FT                   DQRDSVMTKTAHMHFNGVLMANDAFWEAPNYMTMYSWIILDNDPGGTFPKPSDIFDMEY
FT                   KEFPSMYEVAESVKSRFIVKRKTEHYLRSTGVAFGEKQNYKAPNVGPIKKPIRMKFRNI
FT                   WQPSEWKDTAGGKYEDLKKGALLYVCICDNKATQFSFNLKGQWTMYFINRDLMY"
FT   CDS             complement(1289..1711)
FT                   /codon_start=1
FT                   /product="C3"
FT                   /db_xref="GOA:L0CSH0"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:L0CSH0"
FT                   /protein_id="AGA19565.1"
FT                   /translation="MNVVRDLRTGEPITHRQSTIGTYIHQVPNPFHLKLISWTHQESGF
FT                   FNIRLQLRFNYNLRKQLGLHMAWIEFTVLGRHRNLTGQRFTTIFLKRLLFYLNNYGIIS
FT                   LNLVINSISHVLFDDFNFVESVIHQEYRVAMKEEFY"
FT   CDS             complement(1416..1844)
FT                   /codon_start=1
FT                   /product="C2"
FT                   /db_xref="GOA:L0CT69"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:L0CT69"
FT                   /protein_id="AGA19566.1"
FT                   /translation="MKPLSPGVYKIQSSQRSRNLSSISRVIKKSKTVLLPCKCKFTIHH
FT                   ECGEGFTHRGAHHASSIDDWNIHTPSTQPIPPQTNIMDPPGERVLQHQIAAPLQLQSTE
FT                   TAGITHGLDRIHGIGSSPEFDWTKIYDDFFEEITLLPK"
FT   CDS             complement(1732..2847)
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /note="C1"
FT                   /db_xref="GOA:L0CRA1"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:L0CRA1"
FT                   /protein_id="AGA19567.1"
FT                   /translation="MPRTPRQYRIHAKNIFLTYPHCHLTKEEALLQLQAIQCPSTKKFI
FT                   RICRERHDNGEPHLHVLIQFEGKIQLYNPRHFDLRDGGSGRICHPNIQGAKSSSDVKSY
FT                   IEKDGDYIDWGEFQIDARSARGGQQTANDACAEALNSGTAEAALAVIREKLPKDYIFQF
FT                   HNLKPNLAAIFNPPPVGYVPKYNHTQFVLTDDILDWLESNFFLEESNSPAGPSKYKVIP
FT                   SIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFSTKVYNDDVSYNVIDDVDPHYL
FT                   KMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPGDGASYQNFLDKPENEALKS
FT                   WSLQNSVFTTIEEPLFNITSDQEVEDSTPSL"
FT   CDS             complement(2430..2687)
FT                   /codon_start=1
FT                   /product="C4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:D8WZ37"
FT                   /protein_id="AGA19568.1"
FT                   /translation="MGNLISMCLSSSKEKSSSITPVISIYEMEVPVASATQIFRELNQA
FT                   PTSSPISRRTEITSTGVNFRSMHDLHEEVNRRLMMHVQRR"
XX
SQ   Sequence 2974 BP; 797 A; 529 C; 741 G; 907 T; 0 other;
     accggatggc ccaaaaaaaa tttttggcgc gtatctgata gcgacatgcg cgtagtggag        60
     aaggcgcgcc aaagttaaag tgataacgat tggtcattgt cgggtggtcc taaagtgttt       120
     ccactatcga taatgcgtat tagtgcgatt acacgtggac ttgtgctatg tagctccgaa       180
     gctaagcttc gggtataaat ctaggttcgg tatagtaatc ggttatataa aaatgatttg       240
     gagagtaaat aaagatgaga aacgggttag ggcgtttagg tataaaaaaa gaaggtttta       300
     ctctttagct gagtatttat tagccccatt ggctacccat ctttgtaagg ctcgtatatt       360
     tccagacgat aagtatcttg tcccagcgta taccgacgag gcgtatagtt tcctggtgtt       420
     tcttaaggaa gaaactcgta ccccgtttca gatattgaag gatgagtgga acgtggagtt       480
     taaagagatc gaggtggaac tctcccggtt acgatttggc cccaaagacc ccggcgaaga       540
     ggcctgcagt gaggagagcc ctgttcaaca atcaagtcca gtacagtcga gtagctgcga       600
     gacgtagatg gtccaaggtg tcggttcgag gtaataaacc gtatagatct cgtaggttaa       660
     aggctagtga ttaccagatc tacaaggata agatcggtgg agataatggg tggacagtga       720
     catttagtgg ggactgtact atgttgaata attacgttag aggtattggt agggaccagc       780
     gtgactcggt aatgactaag accgcacata tgcattttaa tggtgtattg atggccaatg       840
     atgctttctg ggaagcacct aattatatga ctatgtatag ttggattatt cttgataatg       900
     atcctggtgg tacatttcca aagccctctg acatctttga tatggagtat aaagagtttc       960
     cgtcgatgta tgaggtcgcc gagagtgtaa aatctcggtt tattgttaag aggaagacgg      1020
     agcattattt acggtctacc ggtgttgcgt ttggggagaa acaaaattat aaggctccta      1080
     atgttggtcc gattaagaag cctatacgga tgaagtttcg caatatatgg cagccctctg      1140
     agtggaagga tacggctgga ggaaaatacg aggatttgaa gaaaggggct ttgttgtacg      1200
     tatgtatttg tgataacaag gctactcagt tttcgtttaa tttgaaggga cagtggacca      1260
     tgtatttcat aaatagagac ttaatgtatt aataaaattc ctctttcatt gcgacgcgat      1320
     attcttgatg tattacagac tcgacaaagt tgaaatcatc aaataaaaca tgactaatac      1380
     tatttataac aagattaagg gatataatcc cgtaattatt taggtagaag agtaatctct      1440
     tcaaaaaaat cgtcgtaaat ctttgtccag tcaaattccg gtgacgaccc aataccgtga      1500
     attcgatcca agccatgtgt aatcccagct gtttccgtag attgtagttg aagcggagct      1560
     gcaatctgat gttgaagaac ccgctctcct ggtgggtcca tgatattagt ttgaggtgga      1620
     atgggttggg tacttggtgt atgtatgttc caatcgtcga ttgacgatgc gtgatgggct      1680
     cccctgtgcg taaatccctc accacattca tgatgaattg tgaatttgca cttacaagga      1740
     aggagtactg tcttcgactt cttgatcact cgtgatattg aagagaggtt cctcgatcgt      1800
     tgtgaagact gaattttgta aactccagga cttaagggct tcattctctg gtttgtcgag      1860
     gaagttttga tatgaggctc cgtctcctgg gttgcataaa atgatcgaag ggattccccc      1920
     ttttataata cgtggcttcc cgtatttgag gtttgtctgc cactcctttt gcgcaccaat      1980
     taaatgcttc cagtgcttca tctttagata atgggggtcc acgtcatcaa tcacgttgta      2040
     agaaacgtcg tcgttgtata ctttagtgga gaagtcgaga tgaccggtta tgtaattatg      2100
     agatccaagg gatcttgccc acagggtttt acctgttctt gaaggacctt ctatgattat      2160
     tgatttaggt ctgtcgatag atggaattac cttatatttg ctcggccccg caggggaatt      2220
     ggactcctcc agaaaaaaat tagactctaa ccaatccaaa atatcatctg ttaagacgaa      2280
     ttgggtatgg ttgtatttgg ggacgtatcc tacaggagga ggattgaata tggccgctaa      2340
     gtttggtttg aggttatgga attgaaagat gtaatcttta gggagtttct ccctaatgac      2400
     agccaaagcg gcttcagcgg tacctgagtt taacgcctct gcacatgcat cattagccgt      2460
     ctgttgacct cctcgtgcag atcgtgcatc gatctgaaat tcaccccagt cgatgtaatc      2520
     tccgtccttc tcgatatagg acttgacgtc ggagcttgat ttagctccct gaatatttgg      2580
     gtggcagatg cgaccggaac ctccatctcg taaatcgaaa tgacgggggt tatagagctg      2640
     gatttttcct tcgaactgga taagcacatg gagatgaggt tccccattat cgtgcctttc      2700
     tctacaaatt cgtatgaatt tctttgttga aggacactgt atagcttgta gttgcagaag      2760
     agcttcttct ttagttagat ggcagtgagg gtatgttagg aaaatgtttt tagcatgaat      2820
     gcgatattgc ctcggagtcc ttggcatttt cggtatttgt agaaatgaat tggggttacg      2880
     ctcaaactct attgtatcgg ggttactggg gttgtatata tagtgtggat tgtagaaggc      2940
     ctcttgctca catttgggcc atccgtttaa tatt                                  2974
//