ID KC108903; SV 1; circular; genomic DNA; STD; VRL; 2968 BP. XX AC KC108903; XX DT 23-DEC-2012 (Rel. 115, Created) DT 23-DEC-2012 (Rel. 115, Last updated, Version 1) XX DE Turnip curly top virus isolate IR:Zaf:Z10:Tur:12, complete genome. XX KW . XX OS Turnip curly top virus OC Viruses; Geminiviridae; Turncurtovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2968 RX PUBMED; 23225113. RA Razavinejad S., Heydarnejad J., Kamali M., Massumi H., Kraberger S., RA Varsani A.; RT "Genetic diversity and host range studies of turnip curly top virus"; RL Virus Genes 0:0(2012). XX RN [2] RP 1-2968 RA Heydarnejad J., Varsani A., Kamali M., Razavinejad S., Massumi H., RA Kraberger S.; RT ; RL Submitted (29-OCT-2012) to the INSDC. RL Plant Protection, Shahid Bahonar University of Kerman, 22 Bahman Ave, RL Kerman, Kerman 7616914111, Iran XX DR MD5; 10296c4a2b116ba635d6e4e3d48f3829. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN 5.2.6 v. 5.2.6 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2968 FT /organism="Turnip curly top virus" FT /host="Brassica rapa var. rapa" FT /isolate="IR:Zaf:Z10:Tur:12" FT /mol_type="genomic DNA" FT /country="Iran:Zafarabad, Shiraz, Fars" FT /collected_by="M. Kamali" FT /collection_date="2012" FT /clone="Z10" FT /db_xref="taxon:859650" FT CDS 233..607 FT /codon_start=1 FT /product="V2" FT /db_xref="UniProtKB/TrEMBL:L0CSF5" FT /protein_id="AGA19557.1" FT /translation="MIWKVNKDEKRVRAFRYKKRRFYSLSEYLLAPLGTHLCKARIFRD FT DKHLVPAYTDEAYSFLVMLRDETRTPFEILKDEWNVEFKEIEVELSRLRFGPKDSCKEA FT RGEESPVYESIHHQSSSSEA" FT CDS 462..1292 FT /codon_start=1 FT /product="coat protein" FT /note="V1" FT /db_xref="GOA:L0CSV1" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:L0CSV1" FT /protein_id="AGA19558.1" FT /translation="MSGTWSLKRSRWNSPGYDLAPRTPAKRPAVRRALFTNQSTTSRVV FT PRRRWSKVYTRGNKPYRSRRLKASDYQIYEDKIGGDNGWTVTFSGDCTMLNNYVRGIGR FT DQRDSVMTKTAHMHFNGVLMANDAFWEAPNYMTMYSWIILDNDPGGTFPKPSDIFDMEY FT KDFPSMYEVAENVKSRFIVKRKTEHYLRSTGVAFGEKQNYKAPNVGPVKKPIRMKFRNM FT WQPSEWKDTAGGKYEDLKKGALLYVCICDNKATQFSFNLKGKWKMYFINRDLMY" FT CDS complement(1289..1711) FT /codon_start=1 FT /product="C3" FT /db_xref="GOA:L0CRD5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L0CRD5" FT /protein_id="AGA19559.1" FT /translation="MNVVRDLRTGEPITHRQSTIGTYIHQVPNPFHLKLISWSHQESGF FT FNIRLQLRFNYNLRKQLGLHMAWIEFTVLGRHRNLTGQRFTTIFLKRLLFYLNNYGIIS FT LNLVINGISHVLFDDFNFVESVIHQEYRVAMKEEFY" FT CDS complement(1416..1844) FT /codon_start=1 FT /product="C2" FT /db_xref="GOA:L0CSW7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L0CSW7" FT /protein_id="AGA19560.1" FT /translation="MKPLSPGVYKIQSSQRSRNLSSISRVIKKSKTVLLPCKCKFTIHH FT ECGEGFTHRGTHHASSIDDWNIHTPSTQPVPPQTNIMEPPGERVLQHQIAAPLQLQPTE FT TTGITHGLDRIHGIGSSPEFDWTKIYDDFFEEITLLPK" FT CDS complement(1732..2847) FT /codon_start=1 FT /product="Rep" FT /note="C1" FT /db_xref="GOA:L0CT67" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0CT67" FT /protein_id="AGA19561.1" FT /translation="MPRTPRQYRIHAKNIFLTYPHCNLSKEEALLQLQAIECPSTKKFI FT RISRELHENGEPHLHVLIQFEGKIQLYNPRHFDLRDRGSSRICHPNIQGAKSSSDVKSY FT IEKDGDYTDWGEFQIDPRSARGGQQTANDACAEALNSGTAEAALAVIREKLPKDYIFQF FT HNLKPNLAAIFNPPPVGYIPKYNHTQFVLTDDILDWLEANFYLEEGITPAGPSKYKVIP FT TIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFSTRVYNDDVTYNVIDDVDPQYL FT KMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPGEGASYQTFLDKPENEALKS FT WSLQNSIFTTIEEPLFNIASDQEVEDSTPSL" FT CDS complement(2430..2687) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L0CR37" FT /protein_id="AGA19562.1" FT /translation="MGNLISMCLSSSKERSNSITPVISIYEIEVPAESVTQIFRELNPA FT PTSSPISRRTEITQTGVNFRSIHDLHEEVNRRLMMHVQRH" XX SQ Sequence 2968 BP; 777 A; 515 C; 752 G; 924 T; 0 other; accggatggc ccaaaaaaat ttttggcgcg tatctgatag cgatgtgcgc gtagtggaga 60 aggcgcgcca aagttaaagt gataacgatt ggtcactgtc gggtggtcct aaagtgtttt 120 cactatcgat aatgcgcatt agtgcgatta cacgtggcat tgtactatat gtctccgaag 180 ctcagcttcg ggtataaata taggtttggg atagtattct atgtaattaa aaatgatttg 240 gaaagtaaat aaagatgaaa aacgggttag ggcgtttagg tacaagaaaa gaaggtttta 300 ttctttatcg gagtatttat tagccccatt gggtacccat ctctgtaagg ctcgtatatt 360 tcgagacgat aagcacttgg ttccagctta taccgacgag gcgtatagtt tcttggttat 420 gcttagagac gaaactcgta ctccgtttga gatattgaag gatgagtgga acgtggagtt 480 taaagagatc gaggtggaac tctcccggtt acgatttggc cccaaggact cctgcaaaga 540 ggcccgcggt gaggagagcc ctgtttacga atcaatccac caccagtcga gtagttccga 600 ggcgtagatg gtctaaggta tatacgcgag gtaataaacc gtatagatct cgtagattaa 660 aggctagtga ttatcagatc tacgaagata agatcggtgg agataatggg tggactgtga 720 catttagtgg ggactgcact atgttgaata attatgttag aggtattggt agggaccagc 780 gtgactcggt tatgactaag accgcacata tgcattttaa tggtgtttta atggctaatg 840 atgcgttctg ggaagctcct aattatatga cgatgtatag ttggatcatt cttgataatg 900 atcctggtgg gactttccca aagccgtctg acatatttga tatggagtac aaagattttc 960 cttctatgta tgaggtagct gagaacgtga aatcacgttt cattgtaaag aggaagacgg 1020 agcattatct acgctcgact ggtgttgcgt ttggggagaa gcaaaattat aaagccccca 1080 atgttggccc ggttaagaag ccgattcgta tgaagttccg taatatgtgg caaccgtcgg 1140 agtggaagga tacagccgga ggtaaatatg aagacttgaa gaagggggcg ttgttgtatg 1200 tttgtatttg tgataacaaa gctacccaat tctcgtttaa cttgaagggt aaatggaaga 1260 tgtattttat aaatagggat ttgatgtatt aataaaactc ttctttcatt gcgacgcgat 1320 actcttgatg tattacagac tcgacaaagt tgaaatcatc aaataaaaca tgactaatac 1380 cattgataac aagattaagg gatataatcc cgtaattatt taggtagaag agtaatctct 1440 tcaaaaaaat cgtcgtaaat ctttgtccag tcaaattccg gtgacgaccc aataccgtga 1500 attcgatcca agccatgtgt aatcccagtt gtttccgtag gttgtagttg aagcggagct 1560 gcaatctgat gttgaagaac ccgctctcct ggtggctcca tgatattagt ttgaggtgga 1620 acgggttggg tacttggtgt atgtatgttc caatcgtcga ttgacgatgc gtgatgggtt 1680 cccctgtgcg taaatccctc accacattca tgatgaattg tgaatttgca cttacaagga 1740 aggagtactg tcttcgactt cttgatcact cgcgatattg aagagaggtt cctcgatcgt 1800 tgtgaagatt gaattttgta aactccagga cttaagggct tcattctctg gcttgtcgag 1860 gaatgtttga tatgaagctc cttcacctgg gttgcataat atgatagagg ggatacctcc 1920 ttttataatg cgtggctttc cgtatttgag gtttgtctgc cactcctttt gcgcaccaat 1980 gaggtgcttc cagtgtttca tctttaggta ttgtgggtcc acgtcgtcta ttacgttgta 2040 agttacgtcg tcgttgtata ctcttgtgga gaagtcaaga tgtccagtta tgtaattatg 2100 actcccaagt gatcgagccc atagggtttt acctgttctt gatggtcctt ctataatgat 2160 agatttaggt ctatcgattg ttggaattac cttatatttg ctcggccccg caggggtgat 2220 gccctcttca agataaaaat tagcttcgag ccagtcaaga atatcatctg tgagaacgaa 2280 ttgggtgtgg ttgtatttgg gtatgtatcc tacaggggga gggttgaata tagctgctaa 2340 gttaggtttg aggttatgga attgaaagat gtaatcttta gggagcttct ccctaatgac 2400 agccagagcg gcttcagcgg tacctgagtt tagtgcctct gcacatgcat cattagccgt 2460 ctgttgacct cctcgtgcag atcgtggatc gatctgaaat tcaccccagt ctgtgtaatc 2520 tccgtccttc tcgatatagg acttgacgtc ggagctggat ttagctccct gaatatttgg 2580 gtgacagatt ctgctggaac ctctatctcg taaatcgaaa tgacgggggt tatagagttg 2640 gatctttcct tcgaactgga taagcacatg gagatgaggt tccccattct cgtgtagttc 2700 tcttgatatg cgaataaatt tcttcgtcga agggcactct atagcttgga gttgcagtag 2760 agcttcttct ttagagagat tacagtgtgg gtatgtgagg aagatgtttt tagcgtgaat 2820 gcgatattgc cttggggtcc tcggcatttt tatatttaga aaatgaatcg gggttacttg 2880 aaaactcata tgtatcgggg ttactggggt tgtatatata gtgtgggtta aaggcttctt 2940 gatttgtttg ggccatccgt ttaatatt 2968 //