ID   KC108902; SV 1; circular; genomic DNA; STD; VRL; 2967 BP.
XX
AC   KC108902;
XX
DT   23-DEC-2012 (Rel. 115, Created)
DT   23-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE   Turnip curly top virus isolate IR:Hom:H9:Tur:12, complete genome.
XX
KW   .
XX
OS   Turnip curly top virus
OC   Viruses; Geminiviridae; Turncurtovirus.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-2967
RX   PUBMED; 23225113.
RA   Razavinejad S., Heydarnejad J., Kamali M., Massumi H., Kraberger S.,
RA   Varsani A.;
RT   "Genetic diversity and host range studies of turnip curly top virus";
RL   Virus Genes 0:0(2012).
XX
RN   [2]
RP   1-2967
RA   Heydarnejad J., Varsani A., Kamali M., Razavinejad S., Massumi H.,
RA   Kraberger S.;
RT   ;
RL   Submitted (29-OCT-2012) to the INSDC.
RL   Plant Protection, Shahid Bahonar University of Kerman, 22 Bahman Ave,
RL   Kerman, Kerman 7616914111, Iran
XX
DR   MD5; 0f14f262629402770cf46d1dde4594a0.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN 5.2.6 v. 5.2.6
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2967
FT                   /organism="Turnip curly top virus"
FT                   /host="Brassica rapa var. rapa"
FT                   /isolate="IR:Hom:H9:Tur:12"
FT                   /mol_type="genomic DNA"
FT                   /country="Iran:Homayejan, Shiraz, Fars"
FT                   /collected_by="M. Kamali"
FT                   /collection_date="2012"
FT                   /clone="H9"
FT                   /db_xref="taxon:859650"
FT   CDS             233..607
FT                   /codon_start=1
FT                   /product="V2"
FT                   /db_xref="UniProtKB/TrEMBL:I3UI97"
FT                   /protein_id="AGA19551.1"
FT                   /translation="MIWRVNKDEKRVRAFRYKKRRFYSLAEYLLAPLATHLCKARIFPD
FT                   DKYLVPAYTDEAYSFLVFLKEETRTPFQILKDEWNVEFKEIEVELSRLRFGPKDPGEEA
FT                   CSEESPVQQSSPVQSSSCET"
FT   CDS             462..1292
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="V1"
FT                   /db_xref="GOA:L0CRB4"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:L0CRB4"
FT                   /protein_id="AGA19552.1"
FT                   /translation="MSGTWSLKRSRWNSPGYDLAPKTPAKRPAVRRALFNNQAQYSRVA
FT                   ARRRWSKFPVRGNKPYRYRKLKASDYQIYKDKIGGDNGWTVTFSGDCTMLNNYVRGIGR
FT                   DQRDSVMTKTAHMHFNGVLMANDAFWEAPNYMTMYSWIILDNDPGGTFPKPSDIFDMEY
FT                   KEFPSMYEVAESVKSRFIVKRKTEHYLRSTGVAFGEKQNYKAPNVGPVKKPIRMKFRNI
FT                   WQPSEWKDTAGGKYEDLKKGALLYVCICDNKATQFSFNLKGQWTMYFINRDLMY"
FT   CDS             complement(1289..1711)
FT                   /codon_start=1
FT                   /product="C3"
FT                   /db_xref="GOA:D8WZ34"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:D8WZ34"
FT                   /protein_id="AGA19553.1"
FT                   /translation="MNVVRDLRTGEPITHRQSTIGTYIHQVPNPFHLKLISWTHQESGF
FT                   FNIRLQLRFNYNLRKQLGLHMAWIEFTVLGRHRNLTGQRFTTIFLKRLLFYLNNYGIIS
FT                   LNLVINGISHVLFDDFNFVESVIHQEYRVAMKEEFY"
FT   CDS             complement(1416..1844)
FT                   /codon_start=1
FT                   /product="C2"
FT                   /db_xref="GOA:D8WZ35"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:D8WZ35"
FT                   /protein_id="AGA19554.1"
FT                   /translation="MKPLSPGVYKIQSSQRSRNLSSISRVIKKSKTVLLPCKCKFTIHH
FT                   ECGEGFTHRGTHHASSIDDWNIHTPSTQPIPPQTNIMDPPGERVLQHQIAAPLQLQSTE
FT                   AAGITHGLDRIHGIGSSPEFDWTKIYDDFFEEITLLPK"
FT   CDS             complement(1732..2847)
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /note="C1"
FT                   /db_xref="GOA:L0CSG4"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:L0CSG4"
FT                   /protein_id="AGA19555.1"
FT                   /translation="MPRTPRQYRIHAKNIFLTYPHCHLSKEDALLQLQTIECPSTKKFI
FT                   RISRELHENGEPHLHVLIQFEGKIQLYNPRHFDLRDRGSARVCHPNIQGAKSSSDVKSY
FT                   IEKDGDYTDWGEFQIDPRSARGGQQTANDACAEALNSGTAEAALAVIREKLPKDYIFQF
FT                   HNLKPNLAAIFNPPPVGYIPKYNHTQFVLTDDILDWLESNFFLEESISPAGPSQYKVIP
FT                   TIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFSTRIYNDDVTYNVIDDVDPQYL
FT                   KMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPAIILCNPGEGASYQTFLDKPENEALKS
FT                   WSLQNSIFTTIEEPLFNITSDQEVQDSTPSL"
FT   CDS             complement(2430..2687)
FT                   /codon_start=1
FT                   /product="C4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:L0CT62"
FT                   /protein_id="AGA19556.1"
FT                   /translation="MGNLISMCLFSSKERSNSITPVISIYEIEVPPESATQIFRELNPA
FT                   PTSSPISRRTEITQTGVNFRSIHDLHEEVNRRLMMHVQRH"
XX
SQ   Sequence 2967 BP; 789 A; 514 C; 739 G; 925 T; 0 other;
     accggatggc ccaaaaaaaa tttttggcgc gtatctgata gcgacatgtg cgtagtggag        60
     aaggcgcgcc aaagttaaag tgataacgat tggtcattgt cgggtggtcc taaagtgttt       120
     ccactatcga taatgcgtat tagtgcgatt acacgtggac ttgtactata tgtctccgaa       180
     gctaagcttc gggtataaat ataggtttgg tatagtaatc ggttatataa aaatgatttg       240
     gagagtaaat aaagatgaga aacgggttag ggcgtttagg tataaaaaaa gaaggtttta       300
     ctctttagct gagtatttat tagccccatt ggctactcat ctttgcaagg ctcgtatatt       360
     tccagacgat aagtatcttg tcccagcgta taccgacgag gcgtatagtt tcctggtgtt       420
     tcttaaggaa gaaactcgta ccccgtttca gatattgaag gatgagtgga acgtggagtt       480
     taaagagatc gaggtggaac tctcccggtt acgatttggc cccaaagacc ccggcgaaga       540
     ggcctgcagt gaggagagcc ctgttcaaca atcaagccca gtacagtcga gtagctgcga       600
     gacgtagatg gtctaagttc cctgtccgag gtaataaacc gtataggtat cgtaagttaa       660
     aggctagtga ttatcagatc tacaaggata agattggtgg agataatggg tggacagtga       720
     catttagtgg ggactgcact atgttgaata attacgttag aggtattggt agggaccagc       780
     gtgactcggt gatgactaag accgcacata tgcattttaa tggggtactt atggccaatg       840
     atgctttctg ggaagcacct aattatatga ctatgtatag ctggattatt cttgataatg       900
     atcctggtgg tacatttcca aagccctctg atatatttga tatggagtat aaagagtttc       960
     cgtcaatgta tgaggtcgcc gagagtgtta aatctcggtt tattgttaag aggaagacgg      1020
     aacattattt acgttctacc ggtgttgcgt ttggagagaa acaaaattat aaggccccta      1080
     atgttggtcc ggttaagaag cctatacgta tgaagtttcg taatatatgg caaccttcag      1140
     agtggaagga tacggctgga ggcaaatacg aagatttgaa gaaaggggct ctgttatatg      1200
     tatgtatttg tgataacaag gctactcaat tttcttttaa tttgaagggt cagtggacca      1260
     tgtatttcat aaatagagat ttgatgtatt aataaaactc ctctttcatt gccacgcgat      1320
     attcttgatg tattacagac tcgacaaagt tgaaatcatc aaataaaaca tgactaatac      1380
     catttataac aagattaagg gatataatcc cgtaattatt taggtagaag agtaatctct      1440
     tcaaaaaaat cgtcgtaaat ctttgtccag tcaaattccg gtgacgaccc aataccgtga      1500
     attcgatcca agccatgtgt aatcccagct gcttccgtag attgtagttg aagcggagct      1560
     gcaatctgat gttgaagaac ccgctctcct ggtgggtcca tgatattagt ttgaggtgga      1620
     atgggttggg tacttggtgt atgtatgttc caatcgtcga ttgacgatgc gtgatgggtt      1680
     cccctgtgcg taaatccctc accacattca tgatgaattg tgaatttgca cttacaagga      1740
     aggagtactg tcttggactt cttgatcact cgtgatattg aagagaggtt cctcgatcgt      1800
     tgtgaagatt gaattttgta aactccagga cttaagggct tcattctctg gcttgtcgag      1860
     gaatgtttgg taggaagctc cttctcctgg gttgcataat atgatagcgg ggataccccc      1920
     ttttataatg cgtggctttc cgtatttgag gtttgtctgc cactcctttt gtgcaccaat      1980
     gagatgcttc cagtgtttca tttttaggta ttgtgggtcc acgtcgtcta ttacgttgta      2040
     agtaacgtcg tcgttgtata ttcttgtgga gaagtcaaga tgtccagtta tgtaattatg      2100
     gcttccaagt gatcttgccc atagggtttt acctgttctt gaaggtcctt ctataatgat      2160
     agatttaggt ctatctattg ttggaattac cttatattga ctcggccccg caggggaaat      2220
     ggactcctca aggaaaaaat tagactcgag ccaatccaaa atatcgtctg tgaggacgaa      2280
     ctgtgtgtgg ttgtatttgg gtatgtatcc tacaggggga gggttgaata tagctgccaa      2340
     gttaggtttt aggttatgga attgaaagat gtaatcttta gggagcttct ccctaatgac      2400
     agccagagcg gcttcagcgg tacctgagtt tagtgcctct gcacatgcat cattagccgt      2460
     ctgttgacct cctcgtgcag atcgtggatc gatctgaaat tcaccccagt ctgtgtaatc      2520
     tccgtccttc tcgatatagg acttgacgtc ggagctggat ttagctccct gaatatttgg      2580
     gtggcagact ctggcggaac ctctatctcg taaatcgaaa tgacgggggt tatagagttg      2640
     gatctttcct tcgaactgaa taagcacatg gagatgaggt tccccatttt cgtgtaattc      2700
     tcttgatatg cgaataaatt tcttcgttga agggcactct atagtctgta gttgcagtag      2760
     agcgtcttct ttagagagat gacagtgtgg gtatgtgagg aagatgtttt tagcgtgaat      2820
     acgatattgc cttggggtcc tcggcatttt tatatttaga aaatgaatcg gggttacctg      2880
     aaaactcata tgtatcgggg ttactggggt tgtatatata gtatgggtga aaggcttctt      2940
     gattgtttgg gccatccgtt taatatt                                          2967
//