ID KC108899; SV 1; circular; genomic DNA; STD; VRL; 2972 BP. XX AC KC108899; XX DT 23-DEC-2012 (Rel. 115, Created) DT 23-DEC-2012 (Rel. 115, Last updated, Version 1) XX DE Turnip curly top virus isolate IR:Hom:H6:Tur:12, complete genome. XX KW . XX OS Turnip curly top virus OC Viruses; Geminiviridae; Turncurtovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2972 RX PUBMED; 23225113. RA Razavinejad S., Heydarnejad J., Kamali M., Massumi H., Kraberger S., RA Varsani A.; RT "Genetic diversity and host range studies of turnip curly top virus"; RL Virus Genes 0:0(2012). XX RN [2] RP 1-2972 RA Heydarnejad J., Varsani A., Kamali M., Razavinejad S., Massumi H., RA Kraberger S.; RT ; RL Submitted (29-OCT-2012) to the INSDC. RL Plant Protection, Shahid Bahonar University of Kerman, 22 Bahman Ave, RL Kerman, Kerman 7616914111, Iran XX DR MD5; f9788d527d8dc112eef05261ce2f0db8. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN 5.2.6 v. 5.2.6 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2972 FT /organism="Turnip curly top virus" FT /host="Brassica rapa var. rapa" FT /isolate="IR:Hom:H6:Tur:12" FT /mol_type="genomic DNA" FT /country="Iran:Homayejan, Shiraz, Fars" FT /collected_by="M. Kamali" FT /collection_date="2012" FT /clone="H6" FT /db_xref="taxon:859650" FT CDS 231..605 FT /codon_start=1 FT /product="V2" FT /db_xref="UniProtKB/TrEMBL:L0CST2" FT /protein_id="AGA19533.1" FT /translation="MIWRVNKDEKRIRAFRYKKRRFYSLAEYLLAPLATHLCKARIFPD FT DKYLVPAYTDEAYSFLVFLKEETRTPFQILKDEWNVEFKEIEVELSRLRFGPKDPGEEA FT CSEESPVQQSSPVQSSSCET" FT CDS 460..1290 FT /codon_start=1 FT /product="coat protein" FT /note="V1" FT /db_xref="GOA:L0CSS7" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:L0CSS7" FT /protein_id="AGA19534.1" FT /translation="MSGTWSLKRSRWNSPGYDLAPKTPAKRPAVRRALFNNQAQYSRVA FT ARRRWSKVSVRGNKPYRSRRLKASDYQIYKDKIGGDNGWTVTFSGDCTMLNNYVRGIGR FT DQRDSVMTKTAHMHFNGVLMANDAFWEAPNYMTMYSWIILDNDPGGTFPKPSDIFDMEY FT KEFPSMYEVAESVKSRFIVKRKTEHYLRSTGVAFGEKQNYKAPNVGPIKKPIRMKFRNI FT WQPSEWKDTAGGKYEDLKKGALLYVCICDNKATQFSFNLKGQWTMYFINRDLMY" FT CDS complement(1287..1709) FT /codon_start=1 FT /product="C3" FT /db_xref="GOA:D8WZ34" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D8WZ34" FT /protein_id="AGA19535.1" FT /translation="MNVVRDLRTGEPITHRQSTIGTYIHQVPNPFHLKLISWTHQESGF FT FNIRLQLRFNYNLRKQLGLHMAWIEFTVLGRHRNLTGQRFTTIFLKRLLFYLNNYGIIS FT LNLVINGISHVLFDDFNFVESVIHQEYRVAMKEEFY" FT CDS complement(1414..1842) FT /codon_start=1 FT /product="C2" FT /db_xref="GOA:L0CT46" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L0CT46" FT /protein_id="AGA19536.1" FT /translation="MKPLSPGVYKIQSSQRSRNLSSISRVIKKSKTVLLPCKCKFTIQH FT ECGEGFTHRGTHHASSIDDWNIHTPSTQPIPPQTNIMDPPGERVLQHQIAAPLQLQSTE FT AAGITHGLDRIHGIGSPPEFDWTKIYDDFFEEITLLPK" FT CDS complement(1730..2845) FT /codon_start=1 FT /product="Rep" FT /note="C1" FT /db_xref="GOA:L0CRA1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0CRA1" FT /protein_id="AGA19537.1" FT /translation="MPRTPRQYRIHAKNIFLTYPHCHLTKEEALLQLQAIQCPSTKKFI FT RICRERHDNGEPHLHVLIQFEGKIQLYNPRHFDLRDGGSGRICHPNIQGAKSSSDVKSY FT IEKDGDYIDWGEFQIDARSARGGQQTANDACAEALNSGTAEAALAVIREKLPKDYIFQF FT HNLKPNLAAIFNPPPVGYVPKYNHTQFVLTDDILDWLESNFFLEESNSPAGPSKYKVIP FT SIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFSTKVYNDDVSYNVIDDVDPHYL FT KMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPGDGASYQNFLDKPENEALKS FT WSLQNSVFTTIEEPLFNITSDQEVEDSTPSL" FT CDS complement(2428..2685) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D8WZ37" FT /protein_id="AGA19538.1" FT /translation="MGNLISMCLSSSKEKSSSITPVISIYEMEVPVASATQIFRELNQA FT PTSSPISRRTEITSTGVNFRSMHDLHEEVNRRLMMHVQRR" XX SQ Sequence 2972 BP; 797 A; 532 C; 737 G; 906 T; 0 other; accggatggc ccaaaaaaat tttggcgcgt atctgatagc gacatgcgcg tagtggagaa 60 ggcgcgccaa agttaaagtg ataacgattg gtcattgtcg ggtggtccta aagtgtttcc 120 actatcgata atgcgtatta gtgcgattac acgtggactt gtactatata gctccgaagc 180 taagcttcgg gtataaatat aggttcggta tagtaatcgg ttatataaaa atgatttgga 240 gagtaaataa agatgagaaa cggattaggg cgtttaggta taaaaaaaga aggttttact 300 ctttagctga gtatttatta gccccattgg ctacccatct ttgtaaggct cgtatatttc 360 cagacgataa gtatcttgtc ccagcgtata ccgacgaggc gtatagtttc ttggtgtttc 420 ttaaggaaga aactcgtacc ccgtttcaga tattgaagga tgagtggaac gtggagttta 480 aagagatcga ggtggaactc tcccggttac gatttggccc caaagacccc ggcgaagagg 540 cctgcagtga ggagagccct gttcaacaat caagcccagt acagtcgagt agctgcgaga 600 cgtagatggt ccaaggtctc ggttcgaggt aataaaccgt atagatctcg taggttaaag 660 gctagtgatt accagatcta caaggataag atcggtggag ataatgggtg gactgtgaca 720 tttagtgggg actgtactat gttgaataat tacgttagag gtattggtag ggaccagcgt 780 gactcggtaa tgactaagac cgcacatatg cattttaatg gtgtattgat ggccaatgat 840 gctttctggg aagcacctaa ttatatgact atgtatagtt ggattattct tgataatgat 900 cctggtggta catttccaaa gccctctgac atctttgata tggagtataa agagtttccg 960 tcgatgtatg aggtcgccga gagtgtcaaa tctcggttta ttgttaagag gaagacggag 1020 cattatttgc ggtctaccgg tgttgcgttt ggggagaaac aaaattataa ggctcctaat 1080 gttggtccga ttaagaagcc tatacggatg aagtttcgca atatatggca gccctctgag 1140 tggaaggata cggctggagg aaaatacgag gatttgaaga aaggggcttt gttgtacgta 1200 tgtatttgtg ataacaaggc tactcaattt tcgtttaatt tgaagggaca gtggaccatg 1260 tatttcataa atagagactt aatgtattaa taaaattcct ctttcattgc gacgcgatat 1320 tcttgatgta ttacagactc gacaaagttg aaatcatcaa ataaaacatg actaatacca 1380 tttataacaa gattaaggga tataatcccg taattattta ggtagaagag taatctcttc 1440 aaaaaaatcg tcgtaaatct ttgtccagtc aaattccggt ggcgacccaa taccgtgaat 1500 tcgatccaag ccatgtgtaa tcccagctgc ttccgtagat tgtagttgaa gcggagctgc 1560 aatctgatgt tgaagaaccc gctctcctgg tgggtccatg atattagttt gaggtggaat 1620 gggttgggta cttggtgtat gtatgttcca atcgtcgatt gacgatgcgt gatgggttcc 1680 cctgtgcgta aatccctcac cacattcatg ctgaattgtg aatttgcact tacaaggaag 1740 gagtactgtc ttcgacttct tgatcactcg tgatattgaa gagaggttcc tcgatcgttg 1800 tgaagactga attttgtaaa ctccaggact taagggcttc attctctggt ttgtcgagga 1860 agttttgata tgaggctccg tctcctgggt tgcataaaat gatcgaaggg attccccctt 1920 ttataatacg tggcttcccg tatttgaggt ttgtctgcca ctccttttgc gcaccaatta 1980 aatgcttcca gtgcttcatc tttagataat gggggtccac gtcatcaatc acgttgtaag 2040 aaacgtcgtc gttgtatact ttagtggaga agtcgagatg accggttatg taattatgag 2100 atccaaggga tcttgcccac agggttttac ctgttcttga aggaccttct atgattattg 2160 atttaggtct gtcgatagat ggaattacct tatatttact cggccccgca ggggaattgg 2220 actcctccag aaaaaaatta gactctaacc aatccaaaat atcatctgtt aagacgaatt 2280 gggtatggtt gtatttgggg acgtatccta caggaggagg attgaatatg gccgctaagt 2340 ttggtttgag gttatggaat tgaaagatgt aatctttagg gagtttctcc ctaatgacag 2400 ccaaagcggc ttcagcggta cctgagttta acgcctctgc acatgcatca ttagccgtct 2460 gttgacctcc tcgtgcagat cgtgcatcga tctgaaattc accccagtcg atgtaatctc 2520 cgtccttctc gatataggac ttgacgtcgg agcttgattt agctccctga atatttgggt 2580 ggcagatgcg accggaacct ccatctcgta aatcgaaatg acgggggtta tagagctgga 2640 tttttccttc gaactggata agcacatgga gatgaggttc cccattatcg tgcctttctc 2700 tacaaattcg tatgaatttc tttgttgaag gacactgtat agcttgtagt tgcagaagag 2760 cttcttcttt agttagatgg cagtgagggt atgttaggaa aatgttttta gcatgaatgc 2820 gatattgcct cggagtcctt ggcattttcg gtatttgtag aaatgaattg gggttacgct 2880 caaactctat tgtatcgggg ttactggggt tgtatatata gtgtggattg tagaaggcct 2940 cttgctcaca tttgggccat ccgtttaata tt 2972 //