ID   KC108897; SV 1; circular; genomic DNA; STD; VRL; 2972 BP.
XX
AC   KC108897;
XX
DT   23-DEC-2012 (Rel. 115, Created)
DT   23-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE   Turnip curly top virus isolate IR:Zaf:Z9:Tur:12, complete genome.
XX
KW   .
XX
OS   Turnip curly top virus
OC   Viruses; Geminiviridae; Turncurtovirus.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-2972
RX   PUBMED; 23225113.
RA   Razavinejad S., Heydarnejad J., Kamali M., Massumi H., Kraberger S.,
RA   Varsani A.;
RT   "Genetic diversity and host range studies of turnip curly top virus";
RL   Virus Genes 0:0(2012).
XX
RN   [2]
RP   1-2972
RA   Heydarnejad J., Varsani A., Kamali M., Razavinejad S., Massumi H.,
RA   Kraberger S.;
RT   ;
RL   Submitted (29-OCT-2012) to the INSDC.
RL   Plant Protection, Shahid Bahonar University of Kerman, 22 Bahman Ave,
RL   Kerman, Kerman 7616914111, Iran
XX
DR   MD5; d5625904982516ea7ef789135afc713f.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN 5.2.6 v. 5.2.6
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2972
FT                   /organism="Turnip curly top virus"
FT                   /host="Brassica rapa var. rapa"
FT                   /isolate="IR:Zaf:Z9:Tur:12"
FT                   /mol_type="genomic DNA"
FT                   /country="Iran:Zafarabad, Shiraz, Fars"
FT                   /collected_by="M. Kamali"
FT                   /collection_date="2012"
FT                   /clone="Z9"
FT                   /db_xref="taxon:859650"
FT   CDS             231..605
FT                   /codon_start=1
FT                   /product="V2"
FT                   /db_xref="UniProtKB/TrEMBL:L0CT35"
FT                   /protein_id="AGA19521.1"
FT                   /translation="MIWRVNKDEKRVRAFRYKKRRFYSLAEYLLAPLATHLCKARIFPD
FT                   DKYLVPAYTDEAYSFLVFLKEETRTPFQILKDEWNVEFKEIEVELSRLRFDPKDPGEEA
FT                   CSEESPVQQSSPIQSSSCET"
FT   CDS             460..1290
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="V1"
FT                   /db_xref="GOA:L0CR87"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:L0CR87"
FT                   /protein_id="AGA19522.1"
FT                   /translation="MSGTWSLKRSRWNSPGYDLTPKTPAKRPAVRRALFNNQAQYSRVA
FT                   ARRRWSKVSVRGNKPYRSRRLKASDYQIYKDKIGGDNGWTVTFSGDCTMLNNYVRGIGR
FT                   DQRDSVMTKTAHMHFNGVLMANDAFWEAPNYMTMYSWIILDNDPGGTFPKPSDIFDMEY
FT                   KEFPSMYEVAESVKSRFIVKRKTEHYLRSTGVAFGEKQNYKAPNVGPIKKPIRMKFRNI
FT                   WQPSEWKDTAGGKYEDLKKGALLYVCICDNKATQFSFNLKGQWTMYFINRDLMY"
FT   CDS             complement(1287..1709)
FT                   /codon_start=1
FT                   /product="C3"
FT                   /db_xref="GOA:L0CSS2"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:L0CSS2"
FT                   /protein_id="AGA19523.1"
FT                   /translation="MNVVRDLRTGEPITHRQSTIGTYIPQVPNPFHLKLISWTHQESGF
FT                   FNIRLQLRFNYNLRKQLGLHMAWIEFTVLGRHRNLTGQRFTTIFLKRLLFYLNNYGIIS
FT                   LNLVINGISHVLFDDFNFVESVIHQEYRVAMKEEFY"
FT   CDS             complement(1414..1842)
FT                   /codon_start=1
FT                   /product="C2"
FT                   /db_xref="GOA:D8WZ35"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:D8WZ35"
FT                   /protein_id="AGA19524.1"
FT                   /translation="MKPLSPGVYKIQSSQRSRNLSSISRVIKKSKTVLLPCKCKFTIHH
FT                   ECGEGFTHRGTHHASSIDDWNIHTPSTQPIPPQTNIMDPPGERVLQHQIAAPLQLQSTE
FT                   AAGITHGLDRIHGIGSSPEFDWTKIYDDFFEEITLLPK"
FT   CDS             complement(1730..2845)
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /note="C1"
FT                   /db_xref="GOA:L0CSD8"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:L0CSD8"
FT                   /protein_id="AGA19525.1"
FT                   /translation="MPRTPRQYRVHAKNIFLTYPHCHLTKEEALLQLQAIQCPSTKKFI
FT                   RICRERHDNGEPHLHVLIQFEGKIQLYNPRHFDLRDGGSGRICHPNIQGAKSSSDVKSY
FT                   IEKDGDYIDWGEFQIDARSARGGQQTANDACAEALNSGTAEAALAVIREKLPKDYIFQF
FT                   HNLKPNLAAIFNPPPVGYVPKYNHTQFVLTDDILDWLESNFFLEESNTPAGPSKYKVIP
FT                   SIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFSTKVYNDDVSYNVIDDVDPHYL
FT                   KMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPGDGASYQNFLDKPENEALKS
FT                   WSLQNSVFTTIEEPLFNITSDQEVEDSTPSL"
FT   CDS             complement(2428..2685)
FT                   /codon_start=1
FT                   /product="C4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:D8WZ37"
FT                   /protein_id="AGA19526.1"
FT                   /translation="MGNLISMCLSSSKEKSSSITPVISIYEMEVPVASATQIFRELNQA
FT                   PTSSPISRRTEITSTGVNFRSMHDLHEEVNRRLMMHVQRR"
XX
SQ   Sequence 2972 BP; 801 A; 531 C; 736 G; 904 T; 0 other;
     accggatggc ccaaaaaaat tttggcgcgt atctgatagc gacatgcgcg tagtggagaa        60
     ggcgcgccaa agttaaagtg ataacgattg gtcattgtcg ggtggtccta aagtgtttcc       120
     actatcgata atgcgtatta gtgcgattac acgtggactt gtactatgta gctccgaagc       180
     taagcttcgg gtataaatat aggttcggta tagtaatcgg ttatataaaa atgatttgga       240
     gagtaaataa agatgagaaa cgggttaggg cgtttaggta taaaaaaaga aggttttact       300
     ctttagctga gtatttatta gccccattgg ctacccatct ttgtaaggct cgtatatttc       360
     cagacgataa gtatcttgtc ccagcgtata ccgacgaggc gtatagtttc ctggtgtttc       420
     ttaaggaaga aactcgtacc ccgtttcaga tattgaagga tgagtggaac gtggagttta       480
     aagagatcga ggtggaactc tcccggttac gatttgaccc caaagacccc ggcgaagagg       540
     cctgcagtga ggagagccct gttcaacaat caagcccaat acagtcgagt agctgcgaga       600
     cgtagatggt ccaaggtctc ggttcgaggt aataaaccgt atagatctcg taggttaaag       660
     gctagtgatt accagatcta caaggataag atcggtggag ataatgggtg gacagtgaca       720
     tttagtgggg actgtactat gttgaataat tacgttagag gtattggtag ggaccagcgt       780
     gactcggtaa tgactaagac cgcacatatg cattttaatg gtgtattgat ggccaatgat       840
     gctttctggg aagcacctaa ttatatgact atgtatagtt ggattattct tgataatgat       900
     cctggtggta catttccaaa gccctctgac atctttgata tggagtataa agagtttccg       960
     tcgatgtatg aggtcgccga gagtgtaaaa tctcggttta ttgttaagag gaagacggag      1020
     cattatttac ggtctaccgg tgttgcgttt ggggagaaac aaaattataa ggctcctaat      1080
     gttggtccga ttaagaagcc tatacggatg aagtttcgca atatatggca gccctctgag      1140
     tggaaggata cggctggagg aaaatacgag gatttgaaga aaggggcttt gttgtacgta      1200
     tgtatttgtg ataacaaggc tactcaattt tcgtttaatt tgaagggaca gtggaccatg      1260
     tatttcataa atagagactt aatgtattaa taaaactcct ctttcattgc gacgcgatat      1320
     tcttgatgta ttacagactc gacaaagttg aaatcatcaa ataaaacatg actaatacca      1380
     tttataacaa gattaaggga tataatcccg taattattta ggtagaagag taatctcttc      1440
     aaaaaaatcg tcgtaaatct ttgtccagtc aaattccggt gacgacccaa taccgtgaat      1500
     tcgatccaag ccatgtgtaa tcccagctgc ttccgtagat tgtagttgaa gcggagctgc      1560
     aatctgatgt tgaagaaccc gctctcctgg tgggtccatg atattagttt gaggtggaat      1620
     gggttgggta cttggggtat gtatgttcca atcgtcgatt gacgatgcgt gatgggttcc      1680
     cctgtgcgta aatccctcac cacattcatg atgaattgtg aatttgcact tacaaggaag      1740
     gagtactgtc ttcgacttct tgatcactcg tgatattgaa gagaggttcc tcgatcgttg      1800
     tgaagactga attttgtaaa ctccaggact taagggcttc attctctggt ttgtcgagga      1860
     agttttgata tgaggctccg tctcctgggt tgcataaaat gatcgatggg attccccctt      1920
     ttataatacg tggcttcccg tatttgaggt ttgtctgcca ctccttttgc gcaccaatta      1980
     aatgcttcca gtgcttcatc tttagataat gggggtccac gtcatcaatc acgttgtaag      2040
     aaacgtcgtc gttgtatact ttagtggaga agtcgagatg accggttatg taattatgag      2100
     atccaaggga tcttgcccac agggttttac ctgttcttga aggaccttct atgattattg      2160
     atttaggtct gtcgatagat ggaattacct tatatttact cggccccgca ggggtattgg      2220
     actcctccag aaaaaaatta gactctaacc aatccaaaat atcatctgtt aagacgaatt      2280
     gggtatggtt gtatttgggg acgtatccta caggaggagg attgaatatg gccgctaagt      2340
     ttggtttgag gttatggaat tgaaagatgt aatctttagg gagtttctct ctaatgacag      2400
     ccaaagcggc ttcagcggta cctgagttta acgcctctgc acatgcatca ttagccgtct      2460
     gttgacctcc tcgtgcagat cgtgcatcga tctgaaattc accccagtcg atgtaatctc      2520
     cgtccttctc gatataggac ttgacgtcgg agcttgattt agctccctga atatttgggt      2580
     ggcagatgcg accggaacct ccatctcgta aatcgaaatg acgggggtta tagagctgga      2640
     tttttccttc gaactggata agcacatgga gatgaggttc cccattatcg tgcctttctc      2700
     tacaaattcg tatgaatttc tttgttgaag gacactgtat agcttgtagt tgcagaagag      2760
     cttcttcttt agttagatgg cagtgagggt atgttaggaa aatgttttta gcatgaacgc      2820
     gatattgcct cggagtcctt ggcattttcg gtatttgtag aaatgaattg gggttacgct      2880
     caaacttaat tgtatcgggg ttactggggt tgtatatata gtgtggattg tagaaggcct      2940
     cttgctcaca tttgggccat ccgtttaata tt                                    2972
//