ID   KC108896; SV 1; circular; genomic DNA; STD; VRL; 2973 BP.
XX
AC   KC108896;
XX
DT   23-DEC-2012 (Rel. 115, Created)
DT   23-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE   Turnip curly top virus isolate IR:Lap:L16:Tur:12, complete genome.
XX
KW   .
XX
OS   Turnip curly top virus
OC   Viruses; Geminiviridae; Turncurtovirus.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-2973
RX   PUBMED; 23225113.
RA   Razavinejad S., Heydarnejad J., Kamali M., Massumi H., Kraberger S.,
RA   Varsani A.;
RT   "Genetic diversity and host range studies of turnip curly top virus";
RL   Virus Genes 0:0(2012).
XX
RN   [2]
RP   1-2973
RA   Heydarnejad J., Varsani A., Kamali M., Razavinejad S., Massumi H.,
RA   Kraberger S.;
RT   ;
RL   Submitted (29-OCT-2012) to the INSDC.
RL   Plant Protection, Shahid Bahonar University of Kerman, 22 Bahman Ave,
RL   Kerman, Kerman 7616914111, Iran
XX
DR   MD5; 490d5985e7dbe43fc0fe3a7b8419ddf8.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN 5.2.6 v. 5.2.6
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2973
FT                   /organism="Turnip curly top virus"
FT                   /host="Brassica rapa var. rapa"
FT                   /isolate="IR:Lap:L16:Tur:12"
FT                   /mol_type="genomic DNA"
FT                   /country="Iran:Lapouei, Shiraz, Fars"
FT                   /collected_by="M. Kamali"
FT                   /collection_date="2012"
FT                   /clone="L16"
FT                   /db_xref="taxon:859650"
FT   CDS             232..606
FT                   /codon_start=1
FT                   /product="V2"
FT                   /db_xref="UniProtKB/TrEMBL:L0CSD0"
FT                   /protein_id="AGA19515.1"
FT                   /translation="MIWRVNKDEKRVRAFRYKKRRFYSLAEYLLAPLATHLCKARIFPD
FT                   DKYLVPAYTDEAYSFLVFLKEETRTPFQILKDEWNVEFKEIEVELSRLRFDPKDPGEEA
FT                   CSEESPVQQSSPVQSSSCET"
FT   CDS             461..1291
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="V1"
FT                   /db_xref="GOA:L0CR87"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:L0CR87"
FT                   /protein_id="AGA19516.1"
FT                   /translation="MSGTWSLKRSRWNSPGYDLTPKTPAKRPAVRRALFNNQAQYSRVA
FT                   ARRRWSKVSVRGNKPYRSRRLKASDYQIYKDKIGGDNGWTVTFSGDCTMLNNYVRGIGR
FT                   DQRDSVMTKTAHMHFNGVLMANDAFWEAPNYMTMYSWIILDNDPGGTFPKPSDIFDMEY
FT                   KEFPSMYEVAESVKSRFIVKRKTEHYLRSTGVAFGEKQNYKAPNVGPIKKPIRMKFRNI
FT                   WQPSEWKDTAGGKYEDLKKGALLYVCICDNKATQFSFNLKGQWTMYFINRDLMY"
FT   CDS             complement(1288..1710)
FT                   /codon_start=1
FT                   /product="C3"
FT                   /db_xref="GOA:D8WZ34"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:D8WZ34"
FT                   /protein_id="AGA19517.1"
FT                   /translation="MNVVRDLRTGEPITHRQSTIGTYIHQVPNPFHLKLISWTHQESGF
FT                   FNIRLQLRFNYNLRKQLGLHMAWIEFTVLGRHRNLTGQRFTTIFLKRLLFYLNNYGIIS
FT                   LNLVINGISHVLFDDFNFVESVIHQEYRVAMKEEFY"
FT   CDS             complement(1415..1843)
FT                   /codon_start=1
FT                   /product="C2"
FT                   /db_xref="GOA:D8WZ35"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:D8WZ35"
FT                   /protein_id="AGA19518.1"
FT                   /translation="MKPLSPGVYKIQSSQRSRNLSSISRVIKKSKTVLLPCKCKFTIHH
FT                   ECGEGFTHRGTHHASSIDDWNIHTPSTQPIPPQTNIMDPPGERVLQHQIAAPLQLQSTE
FT                   AAGITHGLDRIHGIGSSPEFDWTKIYDDFFEEITLLPK"
FT   CDS             complement(1731..2846)
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /note="C1"
FT                   /db_xref="GOA:L0CRA1"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:L0CRA1"
FT                   /protein_id="AGA19519.1"
FT                   /translation="MPRTPRQYRIHAKNIFLTYPHCHLTKEEALLQLQAIQCPSTKKFI
FT                   RICRERHDNGEPHLHVLIQFEGKIQLYNPRHFDLRDGGSGRICHPNIQGAKSSSDVKSY
FT                   IEKDGDYIDWGEFQIDARSARGGQQTANDACAEALNSGTAEAALAVIREKLPKDYIFQF
FT                   HNLKPNLAAIFNPPPVGYVPKYNHTQFVLTDDILDWLESNFFLEESNSPAGPSKYKVIP
FT                   SIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFSTKVYNDDVSYNVIDDVDPHYL
FT                   KMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPGDGASYQNFLDKPENEALKS
FT                   WSLQNSVFTTIEEPLFNITSDQEVEDSTPSL"
FT   CDS             complement(2429..2686)
FT                   /codon_start=1
FT                   /product="C4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:D8WZ37"
FT                   /protein_id="AGA19520.1"
FT                   /translation="MGNLISMCLSSSKEKSSSITPVISIYEMEVPVASATQIFRELNQA
FT                   PTSSPISRRTEITSTGVNFRSMHDLHEEVNRRLMMHVQRR"
XX
SQ   Sequence 2973 BP; 802 A; 532 C; 734 G; 905 T; 0 other;
     accggatggc ccaaaaaaat ttttggcgcg tatctgatag cgacatgcgc gtagtggaga        60
     aggcgcgcca aagttaaagt gataacgatt ggtcattgtc gggtggtcct aaagtgtttc       120
     cactatcgat aatgcgtatt agtgcgatta cacgtggact tgtactatgt agctccgaag       180
     ctaagcttcg ggtataaata taggttcggt atagtaatcg gttatataaa aatgatttgg       240
     agagtaaata aagatgagaa acgggttagg gcgtttaggt ataaaaaaag aaggttttac       300
     tctttagctg agtatttatt agccccattg gctacccatc tttgtaaggc tcgtatattt       360
     ccagacgata agtatcttgt cccagcgtat accgacgagg cgtatagttt cctggtgttt       420
     cttaaggaag aaactcgtac cccgtttcag atattgaagg atgagtggaa cgtggagttt       480
     aaagagatcg aggtggaact ctcccggtta cgatttgacc ccaaagaccc cggcgaagag       540
     gcctgcagtg aggagagccc tgttcaacaa tcaagcccag tacagtcgag tagctgcgag       600
     acgtagatgg tccaaggtct cggttcgagg taataaaccg tatagatctc gtaggttaaa       660
     ggctagtgat taccagatct acaaggataa gatcggtgga gataatgggt ggacagtgac       720
     atttagtggg gactgtacta tgttgaataa ttacgttaga ggtattggta gggaccagcg       780
     tgactcggta atgactaaga ccgcacatat gcattttaat ggtgtattga tggccaatga       840
     tgctttctgg gaagcaccta attatatgac tatgtatagt tggattattc ttgataatga       900
     tcctggtggt acatttccaa agccctctga catctttgat atggagtata aagagtttcc       960
     gtcgatgtat gaggtcgccg agagtgtaaa gtctcggttt attgttaaga ggaagacgga      1020
     gcattattta cggtctaccg gtgttgcgtt tggggagaaa caaaattata aggctcctaa      1080
     tgttggtccg attaagaagc ctatacggat gaagtttcgc aatatatggc agccctctga      1140
     gtggaaggat acggctggag gaaaatacga ggatttgaag aaaggggctt tgttgtacgt      1200
     atgtatttgt gataacaagg ctactcaatt ttcgtttaat ttgaagggac agtggaccat      1260
     gtatttcata aatagagact taatgtatta ataaaactcc tctttcattg cgacgcgata      1320
     ttcttgatgt attacagact cgacaaagtt gaaatcatca aataaaacat gactaatacc      1380
     atttataaca agattaaggg atataatccc gtaattattt aggtagaaga gtaatctctt      1440
     caaaaaaatc gtcgtaaatc tttgtccagt caaattccgg tgacgaccca ataccgtgaa      1500
     ttcgatccaa gccatgtgta atcccagctg cttccgtaga ttgtagttga agcggagctg      1560
     caatctgatg ttgaagaacc cgctctcctg gtgggtccat gatattagtt tgaggtggaa      1620
     tgggttgggt acttggtgta tgtatgttcc aatcgtcgat tgacgatgcg tgatgggttc      1680
     ccctgtgcgt aaatccctca ccacattcat gatgaattgt gaatttgcac ttacaaggaa      1740
     ggagtactgt cttcgacttc ttgatcactc gtgatattga agagaggttc ctcgatcgtt      1800
     gtgaagactg aattttgtaa actccaggac ttaagggctt cattctctgg tttgtcgagg      1860
     aagttttgat atgaggctcc gtctcctggg ttgcataaaa tgatcgaagg gattccccct      1920
     tttataatac gtggcttccc gtatttgagg tttgtctgcc actccttttg cgcaccaatt      1980
     aaatgcttcc agtgcttcat ctttagataa tgggggtcca cgtcatcaat cacattgtaa      2040
     gaaacgtcgt cgttgtatac tttagtggaa aagtcgagat gaccggttat gtaattatga      2100
     gatccaaggg atcttgccca cagggtttta cctgttcttg aaggaccttc tatgattatt      2160
     gatttaggtc tgtctataga tggaattacc ttatatttac tcggccccgc aggggaattg      2220
     gactcctcca gaaaaaaatt agactctaac caatccaaaa tatcatctgt taagacgaat      2280
     tgggtatggt tgtatttggg gacgtatcct acaggaggag gattgaatat ggccgctaag      2340
     tttggtttga ggttatggaa ttgaaagatg taatctttag ggagtttctc cctaatgaca      2400
     gccaaagcgg cttcagcggt acctgagttt aacgcctctg cacatgcatc attagccgtc      2460
     tgttgacctc ctcgtgcaga tcgtgcatcg atctgaaatt caccccagtc gatgtaatct      2520
     ccgtccttct cgatatagga cttgacgtcg gagcttgatt tagctccctg aatatttggg      2580
     tggcagatgc gaccggaacc tccatctcgt aaatcgaaat gacgggggtt atagagctgg      2640
     atttttcctt cgaactggat aagcacatgg agatgaggtt ccccattatc gtgcctttct      2700
     ctacaaattc gtatgaattt ctttgttgaa ggacactgta tagcttgtag ttgcagaaga      2760
     gcttcttctt tagttagatg gcagtgaggg tatgttagga aaatgttttt agcatgaatg      2820
     cgatattgcc tcggagtcct tggcattttc ggtatttgta gaaatgaatt ggggttacgc      2880
     tcaaactcta ttgtatcggg gttactgggg ttgtatatat agtgtggatt gtagaaggcc      2940
     tcttgctcac atttgggcca tccgtttaat att                                   2973
//