Dbfetch
ID KC108896; SV 1; circular; genomic DNA; STD; VRL; 2973 BP. XX AC KC108896; XX DT 23-DEC-2012 (Rel. 115, Created) DT 23-DEC-2012 (Rel. 115, Last updated, Version 1) XX DE Turnip curly top virus isolate IR:Lap:L16:Tur:12, complete genome. XX KW . XX OS Turnip curly top virus OC Viruses; Geminiviridae; Turncurtovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2973 RX PUBMED; 23225113. RA Razavinejad S., Heydarnejad J., Kamali M., Massumi H., Kraberger S., RA Varsani A.; RT "Genetic diversity and host range studies of turnip curly top virus"; RL Virus Genes 0:0(2012). XX RN [2] RP 1-2973 RA Heydarnejad J., Varsani A., Kamali M., Razavinejad S., Massumi H., RA Kraberger S.; RT ; RL Submitted (29-OCT-2012) to the INSDC. RL Plant Protection, Shahid Bahonar University of Kerman, 22 Bahman Ave, RL Kerman, Kerman 7616914111, Iran XX DR MD5; 490d5985e7dbe43fc0fe3a7b8419ddf8. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN 5.2.6 v. 5.2.6 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2973 FT /organism="Turnip curly top virus" FT /host="Brassica rapa var. rapa" FT /isolate="IR:Lap:L16:Tur:12" FT /mol_type="genomic DNA" FT /country="Iran:Lapouei, Shiraz, Fars" FT /collected_by="M. Kamali" FT /collection_date="2012" FT /clone="L16" FT /db_xref="taxon:859650" FT CDS 232..606 FT /codon_start=1 FT /product="V2" FT /db_xref="UniProtKB/TrEMBL:L0CSD0" FT /protein_id="AGA19515.1" FT /translation="MIWRVNKDEKRVRAFRYKKRRFYSLAEYLLAPLATHLCKARIFPD FT DKYLVPAYTDEAYSFLVFLKEETRTPFQILKDEWNVEFKEIEVELSRLRFDPKDPGEEA FT CSEESPVQQSSPVQSSSCET" FT CDS 461..1291 FT /codon_start=1 FT /product="coat protein" FT /note="V1" FT /db_xref="GOA:L0CR87" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:L0CR87" FT /protein_id="AGA19516.1" FT /translation="MSGTWSLKRSRWNSPGYDLTPKTPAKRPAVRRALFNNQAQYSRVA FT ARRRWSKVSVRGNKPYRSRRLKASDYQIYKDKIGGDNGWTVTFSGDCTMLNNYVRGIGR FT DQRDSVMTKTAHMHFNGVLMANDAFWEAPNYMTMYSWIILDNDPGGTFPKPSDIFDMEY FT KEFPSMYEVAESVKSRFIVKRKTEHYLRSTGVAFGEKQNYKAPNVGPIKKPIRMKFRNI FT WQPSEWKDTAGGKYEDLKKGALLYVCICDNKATQFSFNLKGQWTMYFINRDLMY" FT CDS complement(1288..1710) FT /codon_start=1 FT /product="C3" FT /db_xref="GOA:D8WZ34" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D8WZ34" FT /protein_id="AGA19517.1" FT /translation="MNVVRDLRTGEPITHRQSTIGTYIHQVPNPFHLKLISWTHQESGF FT FNIRLQLRFNYNLRKQLGLHMAWIEFTVLGRHRNLTGQRFTTIFLKRLLFYLNNYGIIS FT LNLVINGISHVLFDDFNFVESVIHQEYRVAMKEEFY" FT CDS complement(1415..1843) FT /codon_start=1 FT /product="C2" FT /db_xref="GOA:D8WZ35" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D8WZ35" FT /protein_id="AGA19518.1" FT /translation="MKPLSPGVYKIQSSQRSRNLSSISRVIKKSKTVLLPCKCKFTIHH FT ECGEGFTHRGTHHASSIDDWNIHTPSTQPIPPQTNIMDPPGERVLQHQIAAPLQLQSTE FT AAGITHGLDRIHGIGSSPEFDWTKIYDDFFEEITLLPK" FT CDS complement(1731..2846) FT /codon_start=1 FT /product="Rep" FT /note="C1" FT /db_xref="GOA:L0CRA1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L0CRA1" FT /protein_id="AGA19519.1" FT /translation="MPRTPRQYRIHAKNIFLTYPHCHLTKEEALLQLQAIQCPSTKKFI FT RICRERHDNGEPHLHVLIQFEGKIQLYNPRHFDLRDGGSGRICHPNIQGAKSSSDVKSY FT IEKDGDYIDWGEFQIDARSARGGQQTANDACAEALNSGTAEAALAVIREKLPKDYIFQF FT HNLKPNLAAIFNPPPVGYVPKYNHTQFVLTDDILDWLESNFFLEESNSPAGPSKYKVIP FT SIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFSTKVYNDDVSYNVIDDVDPHYL FT KMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPGDGASYQNFLDKPENEALKS FT WSLQNSVFTTIEEPLFNITSDQEVEDSTPSL" FT CDS complement(2429..2686) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D8WZ37" FT /protein_id="AGA19520.1" FT /translation="MGNLISMCLSSSKEKSSSITPVISIYEMEVPVASATQIFRELNQA FT PTSSPISRRTEITSTGVNFRSMHDLHEEVNRRLMMHVQRR" XX SQ Sequence 2973 BP; 802 A; 532 C; 734 G; 905 T; 0 other; accggatggc ccaaaaaaat ttttggcgcg tatctgatag cgacatgcgc gtagtggaga 60 aggcgcgcca aagttaaagt gataacgatt ggtcattgtc gggtggtcct aaagtgtttc 120 cactatcgat aatgcgtatt agtgcgatta cacgtggact tgtactatgt agctccgaag 180 ctaagcttcg ggtataaata taggttcggt atagtaatcg gttatataaa aatgatttgg 240 agagtaaata aagatgagaa acgggttagg gcgtttaggt ataaaaaaag aaggttttac 300 tctttagctg agtatttatt agccccattg gctacccatc tttgtaaggc tcgtatattt 360 ccagacgata agtatcttgt cccagcgtat accgacgagg cgtatagttt cctggtgttt 420 cttaaggaag aaactcgtac cccgtttcag atattgaagg atgagtggaa cgtggagttt 480 aaagagatcg aggtggaact ctcccggtta cgatttgacc ccaaagaccc cggcgaagag 540 gcctgcagtg aggagagccc tgttcaacaa tcaagcccag tacagtcgag tagctgcgag 600 acgtagatgg tccaaggtct cggttcgagg taataaaccg tatagatctc gtaggttaaa 660 ggctagtgat taccagatct acaaggataa gatcggtgga gataatgggt ggacagtgac 720 atttagtggg gactgtacta tgttgaataa ttacgttaga ggtattggta gggaccagcg 780 tgactcggta atgactaaga ccgcacatat gcattttaat ggtgtattga tggccaatga 840 tgctttctgg gaagcaccta attatatgac tatgtatagt tggattattc ttgataatga 900 tcctggtggt acatttccaa agccctctga catctttgat atggagtata aagagtttcc 960 gtcgatgtat gaggtcgccg agagtgtaaa gtctcggttt attgttaaga ggaagacgga 1020 gcattattta cggtctaccg gtgttgcgtt tggggagaaa caaaattata aggctcctaa 1080 tgttggtccg attaagaagc ctatacggat gaagtttcgc aatatatggc agccctctga 1140 gtggaaggat acggctggag gaaaatacga ggatttgaag aaaggggctt tgttgtacgt 1200 atgtatttgt gataacaagg ctactcaatt ttcgtttaat ttgaagggac agtggaccat 1260 gtatttcata aatagagact taatgtatta ataaaactcc tctttcattg cgacgcgata 1320 ttcttgatgt attacagact cgacaaagtt gaaatcatca aataaaacat gactaatacc 1380 atttataaca agattaaggg atataatccc gtaattattt aggtagaaga gtaatctctt 1440 caaaaaaatc gtcgtaaatc tttgtccagt caaattccgg tgacgaccca ataccgtgaa 1500 ttcgatccaa gccatgtgta atcccagctg cttccgtaga ttgtagttga agcggagctg 1560 caatctgatg ttgaagaacc cgctctcctg gtgggtccat gatattagtt tgaggtggaa 1620 tgggttgggt acttggtgta tgtatgttcc aatcgtcgat tgacgatgcg tgatgggttc 1680 ccctgtgcgt aaatccctca ccacattcat gatgaattgt gaatttgcac ttacaaggaa 1740 ggagtactgt cttcgacttc ttgatcactc gtgatattga agagaggttc ctcgatcgtt 1800 gtgaagactg aattttgtaa actccaggac ttaagggctt cattctctgg tttgtcgagg 1860 aagttttgat atgaggctcc gtctcctggg ttgcataaaa tgatcgaagg gattccccct 1920 tttataatac gtggcttccc gtatttgagg tttgtctgcc actccttttg cgcaccaatt 1980 aaatgcttcc agtgcttcat ctttagataa tgggggtcca cgtcatcaat cacattgtaa 2040 gaaacgtcgt cgttgtatac tttagtggaa aagtcgagat gaccggttat gtaattatga 2100 gatccaaggg atcttgccca cagggtttta cctgttcttg aaggaccttc tatgattatt 2160 gatttaggtc tgtctataga tggaattacc ttatatttac tcggccccgc aggggaattg 2220 gactcctcca gaaaaaaatt agactctaac caatccaaaa tatcatctgt taagacgaat 2280 tgggtatggt tgtatttggg gacgtatcct acaggaggag gattgaatat ggccgctaag 2340 tttggtttga ggttatggaa ttgaaagatg taatctttag ggagtttctc cctaatgaca 2400 gccaaagcgg cttcagcggt acctgagttt aacgcctctg cacatgcatc attagccgtc 2460 tgttgacctc ctcgtgcaga tcgtgcatcg atctgaaatt caccccagtc gatgtaatct 2520 ccgtccttct cgatatagga cttgacgtcg gagcttgatt tagctccctg aatatttggg 2580 tggcagatgc gaccggaacc tccatctcgt aaatcgaaat gacgggggtt atagagctgg 2640 atttttcctt cgaactggat aagcacatgg agatgaggtt ccccattatc gtgcctttct 2700 ctacaaattc gtatgaattt ctttgttgaa ggacactgta tagcttgtag ttgcagaaga 2760 gcttcttctt tagttagatg gcagtgaggg tatgttagga aaatgttttt agcatgaatg 2820 cgatattgcc tcggagtcct tggcattttc ggtatttgta gaaatgaatt ggggttacgc 2880 tcaaactcta ttgtatcggg gttactgggg ttgtatatat agtgtggatt gtagaaggcc 2940 tcttgctcac atttgggcca tccgtttaat att 2973 //