ID KC108895; SV 1; circular; genomic DNA; STD; VRL; 2980 BP. XX AC KC108895; XX DT 23-DEC-2012 (Rel. 115, Created) DT 23-DEC-2012 (Rel. 115, Last updated, Version 1) XX DE Turnip curly top virus isolate IR:Lap:L2-P:Tur:12, complete genome. XX KW . XX OS Turnip curly top virus OC Viruses; Geminiviridae; Turncurtovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-2980 RX PUBMED; 23225113. RA Razavinejad S., Heydarnejad J., Kamali M., Massumi H., Kraberger S., RA Varsani A.; RT "Genetic diversity and host range studies of turnip curly top virus"; RL Virus Genes 0:0(2012). XX RN [2] RP 1-2980 RA Heydarnejad J., Varsani A., Kamali M., Razavinejad S., Massumi H., RA Kraberger S.; RT ; RL Submitted (29-OCT-2012) to the INSDC. RL Plant Protection, Shahid Bahonar University of Kerman, 22 Bahman Ave, RL Kerman, Kerman 7616914111, Iran XX DR MD5; a4dcc1027921d80d238405a8f0b8717e. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN 5.2.6 v. 5.2.6 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2980 FT /organism="Turnip curly top virus" FT /host="Brassica rapa var. rapa" FT /isolate="IR:Lap:L2-P:Tur:12" FT /mol_type="genomic DNA" FT /country="Iran:Lapouei, Shiraz, Fars" FT /collected_by="M. Kamali" FT /collection_date="2012" FT /clone="L2-P" FT /db_xref="taxon:859650" FT CDS 236..613 FT /codon_start=1 FT /product="V2" FT /db_xref="UniProtKB/TrEMBL:L0CSQ5" FT /protein_id="AGA19509.1" FT /translation="MIWRIAKDDKRVRAFRYKKRRFYSLSEYLLAPLATHLRLARILPE FT KCWSVVPAYTDEAYSFLFMLKEETRTPFQILKDEWNVEFKEAEVALSRLRLSTEDTGEE FT TGGEESPVQQSSPVQSSSCET" FT CDS 468..1298 FT /codon_start=1 FT /product="coat protein" FT /note="V1" FT /db_xref="GOA:L0CSQ1" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:L0CSQ1" FT /protein_id="AGA19510.1" FT /translation="MSGTWSLKRPRWHSPGYDLAPKTPVKRPAVRRALFNNQAQFSRVA FT ARRRWSKFPVRGNKPYRYRKLKASDYQIYKDKIGGDNGWTVTFSGDCTMLNNYVRGIGR FT DQRDSVMTKTAHMHFNGVLMANDAFWEAPNYMTMYSWIILDNDPGGTFPKPSDIFDMEY FT KEFPSMYEVAESVKSRFIVKRKTEHYLRSTGVAFGEKQNYKAPNVGPVKKPIRMKFRNI FT WQPSEWKDTAGGKYEDLKKGALLYVCICDNKATQFSFNLKGQWTMYFINRDLMY" FT CDS complement(1295..1717) FT /codon_start=1 FT /product="C3" FT /db_xref="GOA:D8WZ40" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D8WZ40" FT /protein_id="AGA19511.1" FT /translation="MSVVRDLRTGEPITHRQSTIGTYIHQVPNPFHLKLISWDHQENGF FT FNIRLQLRFNYNLRKQLGLHMAWIEFTVLGRHRSLTGHRFTTIFLKRLLFYLNNLGIIS FT LNLVINGISHVLFEDFKFVESVINQEYRVAMKEEFY" FT CDS complement(1422..1850) FT /codon_start=1 FT /product="C2" FT /db_xref="GOA:D8WZ41" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D8WZ41" FT /protein_id="AGA19512.1" FT /translation="MKPLSPGVYKIQSSQQSRNLSSISRVIKKSKTVLLPCKCKFTIHH FT ECGEGFTHRGTHNSSSINDWNIHTSSTKPVSSQTNIMGPPGERVLQHQITTPIQLQPTE FT TTGITHGLDRIHGIGSSPEFDWTSIYDDFFEEITLLPK" FT CDS complement(1738..2853) FT /codon_start=1 FT /product="Rep" FT /note="C1" FT /db_xref="GOA:D8WZ42" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D8WZ42" FT /protein_id="AGA19513.1" FT /translation="MPRTPRQYRIHAKNIFLTYPHCHLTKEDALLQLQAIQCPSTKKFI FT RICRERHDNGEPHLHVLIQFEGKIQLYNPRHFDLRDGGSGRICHPNIQGAKSSSDVKSY FT IEKDGDYIDWGEFQIDARSARGGQQTANDACAEALNSGTAEAALAVIREKLPKDYIFQF FT HNLKPNLAAIFNPPPVGYVPKYNHTQFVLTDDILDWLESNFFLEESNSPAGPSKYKVIP FT SIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFSTKVYNDDVSYNVIDDVDPHYL FT KMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPGDGASYQNFLDKPENEALKS FT WSLQNSVFTTIEEPLFNITSDQEVEDSTPTV" FT CDS complement(2436..2693) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D8WZ43" FT /protein_id="AGA19514.1" FT /translation="MGNLISMCLSSSKEKSSSITPVISIYEMEVPVASATQIFRELNRA FT PMSSPISRRTEITSTGVNFRSMHDLHEEVNRRLMMHVQRR" XX SQ Sequence 2980 BP; 808 A; 523 C; 729 G; 920 T; 0 other; accggatggc ccaaaaaaaa tttttggcgc gtgttttgat ggtgacaggt gcgtagtgga 60 gaagccgcgc caaagtgaaa gcaaagacga ttagtcttgg tcgtgtggtc ccaaaggtaa 120 agtattaaag attggttatt gagtgcgatt acacgtgtat ctgtactatt tgtctccgaa 180 gctaagcttc ggctatataa ttagcatcgg tattaggaat tgtgtatatt aaaaaatgat 240 ttggagaatc gcaaaagacg ataaacgggt tagggcgttt aggtataaaa aaagaaggtt 300 ttactcttta tcggagtatt tattggcccc tttggctaca catttacgac tcgctcgtat 360 tttaccagag aagtgttggt ccgtagttcc agcttatacc gacgaggcgt atagttttct 420 gtttatgtta aaagaagaaa cgcgaacgcc gtttcaaata ttgaaagatg agtggaacgt 480 ggagtttaaa gaggccgagg tggcactctc caggctacga cttagcaccg aagacaccgg 540 tgaagagacc ggcggtgagg agagccctgt tcaacaatca agcccagttc agtcgagtag 600 ctgcgagacg tagatggtcg aagtttcctg ttcgaggtaa taaaccgtat aggtatcgta 660 agttaaaagc tagtgattat cagatctaca aggataagat tggtggagat aatgggtgga 720 cggtgacatt tagtggggac tgcactatgt tgaataatta cgttagagga attggtaggg 780 accagcgtga ctcggtgatg actaagaccg cacatatgca ttttaatggg gtattgatgg 840 ccaatgatgc tttctgggaa gcgcctaatt atatgactat gtatagttgg attattcttg 900 ataatgatcc tggtggtaca tttccaaagc cctctgacat ttttgatatg gagtataaag 960 agtttccgtc catgtatgag gtcgccgaga gtgttaaatc tcggtttatt gttaagagaa 1020 agacggagca ttatttaagg tctaccggtg ttgcttttgg ggagaaacaa aattataagg 1080 cgcctaatgt tggtccggtt aagaaaccta tacgtatgaa gtttcgtaat atatggcagc 1140 cttccgagtg gaaggatacg gcgggaggaa aatacgagga tttgaagaaa ggggctttgt 1200 tatacgtatg tatttgtgat aacaaggcta ctcaattttc gtttaatttg aagggtcagt 1260 ggaccatgta tttcataaat agagatttaa tgtattaata aaactcttct ttcattgcaa 1320 cacggtactc ttgatttatt acagactcga caaacttgaa atcctcaaat aaaacatgac 1380 taataccatt tattacaagg ttaagggata taatccctag attatttagg tagaagagta 1440 atctcttcaa aaaaatcgtc gtaaatcgat gtccagtcaa actccggtga cgacccaata 1500 ccgtgaattc gatccaagcc atgtgtaatc ccagttgttt ccgtaggttg tagttgaatc 1560 ggagttgtaa tctgatgttg aagaacccgt tctcctggtg gtcccatgat attagtttga 1620 gatgaaacgg gtttggtact tgatgtatgt atgttccaat cgttgattga cgatgagtta 1680 tgggttcccc tgtgcgtaaa tccctcacca cactcatgat gtattgtgaa tttgcactta 1740 cacggtagga gtactgtctt cgacttcttg atcactcgtg atattgaaga gaggttcctc 1800 gattgttgtg aagactgaat tttgtaaact ccaggactta agggcttcat tctctggttt 1860 gtcgaggaag ttttgatatg aggctccgtc tcctgggttg cataaaatga tcgaagggat 1920 tccccctttt ataatacgtg gcttcccgta tttgaggttt gtctgccact ccttttgcgc 1980 accaattaaa tgcttccagt gcttcatctt tagataatgg gggtccacgt catcaatcac 2040 gttgtaagaa acgtcgtcgt tgtatacttt agtggagaag tcgagatgac cggttatgta 2100 attatgagat ccaagggatc ttgcccacag ggttttacct gttcttgaag gaccttctat 2160 tattattgat ttaggtctgt cgatagatgg aattacctta tatttactcg gccccgcagg 2220 ggaatttgac tcctccagaa aaaaattaga ctctaaccaa tccaaaatat catctgttaa 2280 gacgaattgg gtatggttgt atttggggac gtatcctaca ggaggaggat tgaatatggc 2340 cgctaagttt ggtttcaggt tatggaattg aaagatgtaa tctttaggga gtttctccct 2400 aatgacagcc aaagcggctt cagcggtacc tgagtttaac gcctctgcac atgcatcatt 2460 agccgtctgt tgacctcctc gtgcagatcg tgcatcgatc tgaaattcac cccagtcgat 2520 gtaatctccg tccttctcga tataggactt gacatcggag ctcgatttag ctccctgaat 2580 atttgggtgg cagatgcgac cggaacctcc atctcgtaaa tcgaaatgac gggggttata 2640 gagctggatt tttccttcga actggataag cacatggaga tgaggttccc cattatcgtg 2700 cctttctcta caaattcgta tgaatttctt ggttgaagga cactgtatag cttgtagttg 2760 cagaagagcg tcttctttag ttagatggca gtgagggtat gttaggaaaa tatttttagc 2820 atgaatgcga tattgcctcg gagtccttgg cattttcggt atttgtagaa atgaattggg 2880 gttacgctca aactctattg tatcggggtt actggggttg tatatatagt gtggattgta 2940 gaaggcctct tgctcacatt tgggccatcc gtttaatatt 2980 //