ID   KC108894; SV 1; circular; genomic DNA; STD; VRL; 2981 BP.
XX
AC   KC108894;
XX
DT   23-DEC-2012 (Rel. 115, Created)
DT   23-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE   Turnip curly top virus isolate IR:Zaf:Z8:Tur:12, complete genome.
XX
KW   .
XX
OS   Turnip curly top virus
OC   Viruses; Geminiviridae; Turncurtovirus.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-2981
RX   PUBMED; 23225113.
RA   Razavinejad S., Heydarnejad J., Kamali M., Massumi H., Kraberger S.,
RA   Varsani A.;
RT   "Genetic diversity and host range studies of turnip curly top virus";
RL   Virus Genes 0:0(2012).
XX
RN   [2]
RP   1-2981
RA   Heydarnejad J., Varsani A., Kamali M., Razavinejad S., Massumi H.,
RA   Kraberger S.;
RT   ;
RL   Submitted (29-OCT-2012) to the INSDC.
RL   Plant Protection, Shahid Bahonar University of Kerman, 22 Bahman Ave,
RL   Kerman, Kerman 7616914111, Iran
XX
DR   MD5; a10059d1978930a0654dc8d03b72fa69.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN 5.2.6 v. 5.2.6
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2981
FT                   /organism="Turnip curly top virus"
FT                   /host="Brassica rapa var. rapa"
FT                   /isolate="IR:Zaf:Z8:Tur:12"
FT                   /mol_type="genomic DNA"
FT                   /country="Iran:Zafarabad, Shiraz, Fars"
FT                   /collected_by="M. Kamali"
FT                   /collection_date="2012"
FT                   /clone="Z8"
FT                   /db_xref="taxon:859650"
FT   CDS             237..614
FT                   /codon_start=1
FT                   /product="V2"
FT                   /db_xref="UniProtKB/TrEMBL:L0CSQ5"
FT                   /protein_id="AGA19503.1"
FT                   /translation="MIWRIAKDDKRVRAFRYKKRRFYSLSEYLLAPLATHLRLARILPE
FT                   KCWSVVPAYTDEAYSFLFMLKEETRTPFQILKDEWNVEFKEAEVALSRLRLSTEDTGEE
FT                   TGGEESPVQQSSPVQSSSCET"
FT   CDS             469..1299
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="V1"
FT                   /db_xref="GOA:L0CSQ1"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:L0CSQ1"
FT                   /protein_id="AGA19504.1"
FT                   /translation="MSGTWSLKRPRWHSPGYDLAPKTPVKRPAVRRALFNNQAQFSRVA
FT                   ARRRWSKFPVRGNKPYRYRKLKASDYQIYKDKIGGDNGWTVTFSGDCTMLNNYVRGIGR
FT                   DQRDSVMTKTAHMHFNGVLMANDAFWEAPNYMTMYSWIILDNDPGGTFPKPSDIFDMEY
FT                   KEFPSMYEVAESVKSRFIVKRKTEHYLRSTGVAFGEKQNYKAPNVGPVKKPIRMKFRNI
FT                   WQPSEWKDTAGGKYEDLKKGALLYVCICDNKATQFSFNLKGQWTMYFINRDLMY"
FT   CDS             complement(1296..1718)
FT                   /codon_start=1
FT                   /product="C3"
FT                   /db_xref="GOA:D8WZ40"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:D8WZ40"
FT                   /protein_id="AGA19505.1"
FT                   /translation="MSVVRDLRTGEPITHRQSTIGTYIHQVPNPFHLKLISWDHQENGF
FT                   FNIRLQLRFNYNLRKQLGLHMAWIEFTVLGRHRSLTGHRFTTIFLKRLLFYLNNLGIIS
FT                   LNLVINGISHVLFEDFKFVESVINQEYRVAMKEEFY"
FT   CDS             complement(1423..1851)
FT                   /codon_start=1
FT                   /product="C2"
FT                   /db_xref="GOA:D8WZ41"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:D8WZ41"
FT                   /protein_id="AGA19506.1"
FT                   /translation="MKPLSPGVYKIQSSQQSRNLSSISRVIKKSKTVLLPCKCKFTIHH
FT                   ECGEGFTHRGTHNSSSINDWNIHTSSTKPVSSQTNIMGPPGERVLQHQITTPIQLQPTE
FT                   TTGITHGLDRIHGIGSSPEFDWTSIYDDFFEEITLLPK"
FT   CDS             complement(1739..2854)
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /note="C1"
FT                   /db_xref="GOA:D8WZ42"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:D8WZ42"
FT                   /protein_id="AGA19507.1"
FT                   /translation="MPRTPRQYRIHAKNIFLTYPHCHLTKEDALLQLQAIQCPSTKKFI
FT                   RICRERHDNGEPHLHVLIQFEGKIQLYNPRHFDLRDGGSGRICHPNIQGAKSSSDVKSY
FT                   IEKDGDYIDWGEFQIDARSARGGQQTANDACAEALNSGTAEAALAVIREKLPKDYIFQF
FT                   HNLKPNLAAIFNPPPVGYVPKYNHTQFVLTDDILDWLESNFFLEESNSPAGPSKYKVIP
FT                   SIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFSTKVYNDDVSYNVIDDVDPHYL
FT                   KMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPGDGASYQNFLDKPENEALKS
FT                   WSLQNSVFTTIEEPLFNITSDQEVEDSTPTV"
FT   CDS             complement(2437..2694)
FT                   /codon_start=1
FT                   /product="C4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:D8WZ43"
FT                   /protein_id="AGA19508.1"
FT                   /translation="MGNLISMCLSSSKEKSSSITPVISIYEMEVPVASATQIFRELNRA
FT                   PMSSPISRRTEITSTGVNFRSMHDLHEEVNRRLMMHVQRR"
XX
SQ   Sequence 2981 BP; 810 A; 522 C; 730 G; 919 T; 0 other;
     accggatggc ccaaaaaaaa aattttggcg cgtgttttga tggtgacagg tgcgtagtgg        60
     agaagccgcg ccaaagtgaa agtaaagacg attagtcttg gtcgtgtggt cccaaaggta       120
     aagtattaaa gattggttat tgagtgcgat tacacgtgta tctgtactat ttgtctccga       180
     agctaagctt cggctatata attagcatcg gtattaggaa atgtgtatat taaaaaatga       240
     tttggagaat cgcaaaagac gataaacggg ttagggcgtt taggtataaa aaaagaaggt       300
     tttactcttt atcggagtat ttattggccc ctttggctac acatttacga ctcgctcgta       360
     ttttaccaga gaagtgttgg tccgtagttc cagcttatac cgacgaggcg tatagttttc       420
     tgtttatgtt aaaagaagaa acgcgaacgc cgtttcaaat attgaaagat gagtggaacg       480
     tggagtttaa agaggccgag gtggcactct ccaggctacg acttagcacc gaagacaccg       540
     gtgaagagac cggcggtgag gagagccctg ttcaacaatc aagcccagtt cagtcgagta       600
     gctgcgagac gtagatggtc gaagtttcct gttcgaggta ataaaccgta taggtatcgt       660
     aagttaaaag ctagtgatta tcagatctac aaggataaga ttggtggaga taatgggtgg       720
     acggtgacat ttagtgggga ctgcactatg ttgaataatt acgttagagg aattggtagg       780
     gaccagcgtg actcggtgat gactaagacc gcacatatgc attttaatgg ggtattgatg       840
     gccaatgatg ctttctggga agcgcctaat tatatgacta tgtatagttg gattattctt       900
     gataatgatc ctggtggtac atttccaaag ccctctgaca tttttgatat ggagtataaa       960
     gagtttccgt ccatgtatga ggtcgccgag agtgttaaat ctcggtttat tgttaagaga      1020
     aagacggagc attatttacg gtctaccggt gttgcttttg gggagaaaca aaattataag      1080
     gcgcctaatg ttggtccggt taagaagcct atacgtatga agtttcgtaa tatatggcag      1140
     ccttccgagt ggaaggatac ggcgggagga aaatatgagg atttgaagaa aggggctttg      1200
     ttatacgtat gtatttgtga taacaaggct actcaatttt cgtttaattt gaagggtcaa      1260
     tggaccatgt atttcataaa tagagattta atgtattaat aaaactcttc tttcattgca      1320
     acacggtact cttgatttat tacagactcg acaaacttaa aatcctcaaa taaaacatga      1380
     ctaataccat ttattacaag gttaagggat ataatcccta gattatttag gtagaagagt      1440
     aatctcttca aaaaaatcgt cgtaaatcga tgtccagtca aactccggtg acgacccaat      1500
     accgtgaatt cgatccaagc catgtgtaat cccagttgtt tccgtaggtt gtagttgaat      1560
     cggagttgta atctgatgtt gaagaacccg ttctcctggt ggtcccatga tattagtttg      1620
     agatgaaacg ggtttggtac ttgatgtatg tatgttccaa tcgttgattg acgatgagtt      1680
     atgggttccc ctgtgcgtaa atccctcacc acactcatga tgtattgtga atttgcactt      1740
     acacggtagg agtactgtct tcgacttctt gatcactcgt gatattgaag agaggttcct      1800
     cgattgttgt gaagactgaa ttttgtaaac tccaggactt aagggcttca ttctctggtt      1860
     tgtcgaggaa gttttgatat gaggctccgt ctcctgggtt gcataaaatg atcgaaggga      1920
     ttcccccttt tataatacgt ggcttcccgt atttgaggtt tgtctgccac tccttttgcg      1980
     caccaattaa atgcttccag tgcttcatct ttagataatg ggggtccacg tcatcaatca      2040
     cgttgtaaga aacgtcgtcg ttgtatactt tagtggagaa gtcgagatga ccggttatgt      2100
     aattatgaga tccaagggat cttgcccaca gggttttacc tgttcttgaa ggaccttcta      2160
     tgattattga tttaggtctg tcgatagatg gaattacctt atatttactc ggccccgcag      2220
     gggaattgga ctcctccaga aaaaaattag actctaacca atccaaaata tcatctgtta      2280
     agacgaattg ggtatggttg tatttgggga cgtatcctac aggaggagga ttgaatatgg      2340
     ccgctaagtt tggtttcagg ttatggaatt gaaagatgta atcttttggg agtttctccc      2400
     taatgacagc caaagcggct tcagcggtac ctgagtttaa cgcctctgca catgcatcat      2460
     tagccgtctg ttgacctcct cgtgcagatc gtgcatcgat ctgaaattca ccccagtcga      2520
     tgtaatctcc gtccttctcg atataggact tgacatcgga gctcgattta gctccctgaa      2580
     tatttgggtg gcagatgcga ccggaacctc catctcgtaa atcgaaatga cgggggttat      2640
     agagctggat ttttccttcg aactggataa gcacatggag atgaggttcc ccattatcgt      2700
     gcctttctct acaaattcgt atgaatttct tggttgaagg acactgtata gcttgtagtt      2760
     gcagaagagc gtcttcttta gttagatggc agtgagggta tgttaggaaa atatttttag      2820
     catgaatgcg atattgcctc ggagtccttg gcattttcgg tatttgtaga aatgaattgg      2880
     ggttacgctc aaactctatt gtatcggggt tactggggtt gtatatatag tgtggattgt      2940
     agaaggcctc ttgctcacat ttgggccatc cgtttaatat t                          2981
//