ID   KC108893; SV 1; circular; genomic DNA; STD; VRL; 2979 BP.
XX
AC   KC108893;
XX
DT   23-DEC-2012 (Rel. 115, Created)
DT   23-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE   Turnip curly top virus isolate IR:Lap:L13:Tur:12, complete genome.
XX
KW   .
XX
OS   Turnip curly top virus
OC   Viruses; Geminiviridae; Turncurtovirus.
XX
RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-2979
RX   PUBMED; 23225113.
RA   Razavinejad S., Heydarnejad J., Kamali M., Massumi H., Kraberger S.,
RA   Varsani A.;
RT   "Genetic diversity and host range studies of turnip curly top virus";
RL   Virus Genes 0:0(2012).
XX
RN   [2]
RP   1-2979
RA   Heydarnejad J., Varsani A., Kamali M., Razavinejad S., Massumi H.,
RA   Kraberger S.;
RT   ;
RL   Submitted (29-OCT-2012) to the INSDC.
RL   Plant Protection, Shahid Bahonar University of Kerman, 22 Bahman Ave,
RL   Kerman, Kerman 7616914111, Iran
XX
DR   MD5; c79a7ec3aaa6c4ca31bd478143fdb4b2.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN 5.2.6 v. 5.2.6
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2979
FT                   /organism="Turnip curly top virus"
FT                   /host="Brassica rapa var. rapa"
FT                   /isolate="IR:Lap:L13:Tur:12"
FT                   /mol_type="genomic DNA"
FT                   /country="Iran:Lapouei, Shiraz, Fars"
FT                   /collected_by="M. Kamali"
FT                   /collection_date="2012"
FT                   /clone="L13"
FT                   /db_xref="taxon:859650"
FT   CDS             235..612
FT                   /codon_start=1
FT                   /product="V2"
FT                   /db_xref="UniProtKB/TrEMBL:L0CSQ5"
FT                   /protein_id="AGA19497.1"
FT                   /translation="MIWRIAKDDKRVRAFRYKKRRFYSLSEYLLAPLATHLRLARILPE
FT                   KCWSVVPAYTDEAYSFLFMLKEETRTPFQILKDEWNVEFKEAEVALSRLRLSTEDTGEE
FT                   TGGEESPVQQSSPVQSSSCET"
FT   CDS             467..1297
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="V1"
FT                   /db_xref="GOA:L0CSQ1"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:L0CSQ1"
FT                   /protein_id="AGA19498.1"
FT                   /translation="MSGTWSLKRPRWHSPGYDLAPKTPVKRPAVRRALFNNQAQFSRVA
FT                   ARRRWSKFPVRGNKPYRYRKLKASDYQIYKDKIGGDNGWTVTFSGDCTMLNNYVRGIGR
FT                   DQRDSVMTKTAHMHFNGVLMANDAFWEAPNYMTMYSWIILDNDPGGTFPKPSDIFDMEY
FT                   KEFPSMYEVAESVKSRFIVKRKTEHYLRSTGVAFGEKQNYKAPNVGPVKKPIRMKFRNI
FT                   WQPSEWKDTAGGKYEDLKKGALLYVCICDNKATQFSFNLKGQWTMYFINRDLMY"
FT   CDS             complement(1294..1716)
FT                   /codon_start=1
FT                   /product="C3"
FT                   /db_xref="GOA:D8WZ40"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:D8WZ40"
FT                   /protein_id="AGA19499.1"
FT                   /translation="MSVVRDLRTGEPITHRQSTIGTYIHQVPNPFHLKLISWDHQENGF
FT                   FNIRLQLRFNYNLRKQLGLHMAWIEFTVLGRHRSLTGHRFTTIFLKRLLFYLNNLGIIS
FT                   LNLVINGISHVLFEDFKFVESVINQEYRVAMKEEFY"
FT   CDS             complement(1421..1849)
FT                   /codon_start=1
FT                   /product="C2"
FT                   /db_xref="GOA:D8WZ41"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:D8WZ41"
FT                   /protein_id="AGA19500.1"
FT                   /translation="MKPLSPGVYKIQSSQQSRNLSSISRVIKKSKTVLLPCKCKFTIHH
FT                   ECGEGFTHRGTHNSSSINDWNIHTSSTKPVSSQTNIMGPPGERVLQHQITTPIQLQPTE
FT                   TTGITHGLDRIHGIGSSPEFDWTSIYDDFFEEITLLPK"
FT   CDS             complement(1737..2852)
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /note="C1"
FT                   /db_xref="GOA:L0CT20"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:L0CT20"
FT                   /protein_id="AGA19501.1"
FT                   /translation="MPRTPRQYRIHAKNIFLTYPHCHLTKEDALLQLQAIQCPSTKKFI
FT                   RICRERHDNGEPHLHVLIQFEGKIQLYNPRHFDLRDGSSGRICHPNIQGAKSSSDVKSY
FT                   IEKDGDYIDWGEFQIDPRSARGGQQTANDACAEALNSGTAEAALAVIREKLPKDYIFQF
FT                   HNLKPNLAAIFNPPPVGYVPKYNHTQFVLTDDILDWLESNFFLEESNPPAGPSKYKVIP
FT                   SIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFSTKVYNDDVSYNVIDDVDPHYL
FT                   KMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPGDGASYQNFLDKPENEALKS
FT                   WSLQNSVFTTIEEPLFNITSDQEVEDSTPTV"
FT   CDS             complement(2435..2692)
FT                   /codon_start=1
FT                   /product="C4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:L0CR71"
FT                   /protein_id="AGA19502.1"
FT                   /translation="MGNLISMCLSNSKEKSSSITPVISIYEMEVPVASATQIFRELNRA
FT                   PTSSPISRRTEITSTGVNFRSIHDLHEEVNRRLMMHVQRR"
XX
SQ   Sequence 2979 BP; 806 A; 517 C; 733 G; 923 T; 0 other;
     accggatggc ccaaaaaaaa attttggcgc gtgttttgat ggtgacaggt gcgtagtgga        60
     gaagccgcgc caaattgaaa gtaaagacga ttagtcttgg tcgtgtggtc ccaaaggtaa       120
     agtattaaag attggtattg agtgcgatta cacgtgtatc tgtattattt gtctccgaag       180
     ctaagcttcg gctatataat tagcatcggt attaggaaat gtgtatatta aaaaatgatt       240
     tggagaatcg ctaaagacga taaacgggtt agggcgttta ggtataaaaa aagaaggttt       300
     tactctttat cggagtattt attggcccct ttggctacac atttacgact cgctcgtatt       360
     ttaccagaga agtgttggtc cgtagttcca gcttatactg acgaggcgta tagttttctg       420
     tttatgttaa aagaagaaac gcgaacgccg tttcaaatat tgaaagatga gtggaacgtg       480
     gagtttaaag aggccgaggt ggcactctcc aggctacgac ttagcaccga agacaccggt       540
     gaagagaccg gcggtgagga gagccctgtt caacaatcaa gcccagttca gtcgagtagc       600
     tgcgagacgt agatggtcga agtttcctgt tcgaggtaat aaaccgtata ggtatcgtaa       660
     gttaaaagct agtgattatc agatctacaa ggataagatt ggtggagata atgggtggac       720
     ggtgacattt agtggggact gcactatgtt gaataattac gttagaggaa ttggtaggga       780
     ccagcgtgac tcggtgatga ctaagaccgc acatatgcat tttaatgggg tattgatggc       840
     caatgatgct ttctgggaag cgcctaatta tatgactatg tatagttgga ttattcttga       900
     taatgatcct ggtggtacat ttccaaagcc ctctgacata tttgatatgg agtataaaga       960
     gtttccgtcc atgtatgagg tcgccgagag tgttaaatct cggtttattg ttaagagaaa      1020
     gacggagcat tatttacggt ctaccggtgt tgcttttggg gagaaacaaa attataaggc      1080
     gcctaatgtt ggtccggtta agaagcctat acgtatgaag tttcgtaata tatggcagcc      1140
     ttccgagtgg aaggatacgg ctggaggaaa atacgaggat ttgaagaaag gggctttgtt      1200
     atacgtatgt atttgtgata acaaggctac tcaattttcg tttaatttga agggtcagtg      1260
     gaccatgtat ttcataaata gagatttaat gtattaataa aactcttctt tcattgcaac      1320
     acggtactct tgatttatta cagactcgac aaacttaaaa tcctcaaata aaacatgact      1380
     aataccattt attacaaggt taagggatat aatccctaga ttatttaggt agaagagtaa      1440
     tctcttcaaa aaaatcgtcg taaatcgatg tccagtcaaa ctccggtgac gacccaatac      1500
     cgtgaattcg atccaagcca tgtgtaatcc cagttgtttc cgtaggttgt agttgaatcg      1560
     gagttgtaat ctgatgttga agaacccgtt ctcctggtgg tcccatgata ttagtttgag      1620
     atgaaacggg tttggtactt gatgtatgta tgttccaatc gttgattgac gatgagttat      1680
     gggttcccct gtgcgtaaat ccctcaccac actcatgatg tattgtgaat ttgcacttac      1740
     acggtaggag tactgtcttc gacttcttga tcactcgtga tattgaagag aggttcctcg      1800
     attgttgtga agactgaatt ttgtaaactc caggacttaa gggcttcatt ctctggtttg      1860
     tcgaggaagt tttgatatga ggctccgtct cccgggttgc ataaaatgat cgaagggatt      1920
     ccccctttta taatacgtgg cttcccgtat ttgaggtttg tctgccattc cttttgcgca      1980
     ccaattaaat gcttccagtg tttcatcttt agataatggg ggtccacgtc atcaatcacg      2040
     ttgtaagaaa cgtcgtcgtt gtatacttta gtggagaagt cgagatgacc ggttatgtaa      2100
     ttatgagatc caagggatct tgcccacagg gttttacctg ttcttgaagg accttctatg      2160
     attattgatt taggtctgtc gatagatgga attaccttat atttactcgg ccccgcaggg      2220
     ggattggact cctccagaaa aaaattagac tctaaccaat ccaaaatatc atctgttaag      2280
     acgaattggg tatggttgta tttggggacg tatcctacag gaggaggatt gaatatggcc      2340
     gctaagtttg gtttcaggtt atggaattga aagatgtaat ctttagggag tttctcccta      2400
     atgacagcca aagcggcttc agcggtacct gagtttaacg cctctgcaca tgcatcatta      2460
     gccgtctgtt gacctcctcg tgcagatcgt ggatcgatct gaaattcacc ccagtcgatg      2520
     taatctccgt ccttctcgat ataggacttg acgtcggagc tcgatttagc tccctgaata      2580
     tttgggtggc agatgcgacc ggaacttcca tctcgtaaat cgaaatgacg ggggttatag      2640
     agctggattt ttccttcgaa ttggataagc acatggagat gaggttcccc attatcgtgc      2700
     ctttctctac aaattcgtat gaatttcttg gttgaaggac actgtatagc ttgtagttgc      2760
     agaagagcgt cttctttagt tagatggcag tgagggtatg ttaggaaaat gtttttagca      2820
     tgaatgcgat attgcctcgg agtccttggc attttcggta tttgtagaaa tgaattgggg      2880
     ttacgctcaa actctattgt atcggggtta ctggggttgt atatatagtg tggattgtag      2940
     aaggcctctt gctcacattt gggccatccg tttaatatt                             2979
//