ID KC106649; SV 1; circular; genomic DNA; STD; VRL; 2781 BP.
XX
AC KC106649;
XX
DT 27-JUN-2013 (Rel. 117, Created)
DT 15-MAY-2014 (Rel. 120, Last updated, Version 4)
XX
DE Tomato yellow leaf curl virus - Il isolate TYLCV-IL[IR:Boj:A2], complete
DE genome.
XX
KW .
XX
OS Tomato yellow leaf curl virus - Il
OC Viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2781
RX DOI; 10.1007/s00705-013-1851-z.
RX PUBMED; 24068582.
RA Hosseinzadeh M.R., Shams-Bakhsh M., Osaloo S.K., Brown J.K.;
RT "Phylogenetic relationships, recombination analysis, and genetic
RT variability among diverse variants of tomato yellow leaf curl virus in Iran
RT and the Arabian Peninsula: further support for a TYLCV center of
RT diversity";
RL Arch. Virol. 159(3):485-497(2014).
XX
RN [2]
RP 1-2781
RA Hosseinzadeh M.R., Shamsbakhsh M., Brown J.K., Kazempour-Osalou S.;
RT ;
RL Submitted (31-OCT-2012) to the INSDC.
RL Plant Pathology Department, Tarbiat Modares University, Tehran, Iran
XX
DR MD5; 6bbfb4a62396fd27ae6bb356fd849c29.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: Chromas v. Lite 2.01
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..2781
FT /organism="Tomato yellow leaf curl virus - Il"
FT /host="tomato"
FT /isolate="TYLCV-IL[IR:Boj:A2]"
FT /mol_type="genomic DNA"
FT /country="Iran:Bojnurd"
FT /collection_date="20-Aug-2011"
FT /db_xref="taxon:66366"
FT gene 148..498
FT /gene="V2"
FT CDS 148..498
FT /codon_start=1
FT /gene="V2"
FT /product="movement-like protein"
FT /db_xref="GOA:R9WND7"
FT /db_xref="InterPro:IPR002511"
FT /db_xref="InterPro:IPR005159"
FT /db_xref="UniProtKB/TrEMBL:R9WND7"
FT /protein_id="AGO02126.1"
FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLVRDL
FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV
FT PKAQNIQNVSKP"
FT gene 308..1084
FT /gene="V1"
FT CDS 308..1084
FT /codon_start=1
FT /gene="V1"
FT /product="coat protein"
FT /db_xref="GOA:R9WS18"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:R9WS18"
FT /protein_id="AGO02127.1"
FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW
FT TYRPMYRKPRIYRMYRSPDVPRGCEGSCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH
FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN
FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE
FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN"
FT gene complement(1081..1485)
FT /gene="C3"
FT CDS complement(1081..1485)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancer protein"
FT /db_xref="GOA:R9WRX9"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:R9WRX9"
FT /protein_id="AGO02128.1"
FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI
FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFSYEVLKYLDCLGVISINN
FT VIRAVDHVLYDVLENTINVTETHDIKYKFY"
FT gene complement(1226..1633)
FT /gene="C2"
FT CDS complement(1226..1633)
FT /codon_start=1
FT /gene="C2"
FT /product="transcription activator protein"
FT /db_xref="GOA:R9WNC5"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:R9WNC5"
FT /protein_id="AGO02129.1"
FT /translation="MQPSSPSTSHCSQVSIKVKHKISKKKTIRRKRVDLDCGCSYYLHL
FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ
FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI"
FT gene complement(1542..2615)
FT /gene="C1"
FT CDS complement(1542..2615)
FT /codon_start=1
FT /gene="C1"
FT /product="replication-associated protein"
FT /db_xref="GOA:R9WQS5"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:R9WQS5"
FT /protein_id="AGO02131.1"
FT /translation="MPRLFKVNAKNYFLTYPNCSLSKEEALSQLLAINTPTNKKFIRVA
FT HELHEDGSPHLHVLIQFEGKYQCKNQRFFDLSSPSRSAHFHPNIQAAKSSTDVKTYVEK
FT DGDFIDFGIFQIDSRSARGGQQSANDAYAEALNSGRKSEALNILKEKAPKDYILQFHNL
FT SSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIIIEGDSR
FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS
FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA
FT SINQGQTQDIQEENNKA"
FT gene complement(2171..2479)
FT /gene="C4"
FT CDS complement(2171..2479)
FT /codon_start=1
FT /gene="C4"
FT /product="C4 protein"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:R9WPA8"
FT /protein_id="AGO02130.1"
FT /translation="MNYMKMGLLISMFSSSSKESTNVRTNGSSIYPLQAGQHISIRTFR
FT QLRAQQMSRPTWRKTETSLILEFSKSIADQLEEVSNLPTTHMPKHSIQAENPRPSIY"
XX
SQ Sequence 2781 BP; 767 A; 535 C; 608 G; 871 T; 0 other;
accggatggc cgcgcctttt ctttttatgt ggtccccacg agtgttccgc atacgtcact 60
gtcaaccaat taaattgcat cctcaaacgt tagataagtg ttcagttgtc tatatatact 120
tggtccccaa gtattttgtc ttgcaatatg tgggacccac ttctaaatga atttcctgaa 180
tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgaggaaact 240
tacgagccca atacattggg ccacgattta gttagggatc ttatatctgt tgtaagggcc 300
cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggttcg 360
ccgaaggctg aacttcgaca gcccatacag cagccgtgct gctgtcccca ttgtccaagg 420
cacaaacaag cgacgatcat ggacgtacag gcccatgtac cgaaagccca gaatatacag 480
aatgtatcga agccctgatg ttccccgtgg atgtgaaggc tcatgtaaag tccagtctta 540
tgagcaacgg gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg 600
tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga tatatttttt 660
aggtaaagtc tggatggatg aaaatatcaa gaagcagaat cacactaatc aggtcatgtt 720
cttcttagtc cgtgatagaa ggccctatgg aaacagccca atggattttg gacaggtttt 780
taatatgttc gataatgagc ccagtaccgc aaccgtgaag aatgatttgc gggataggtt 840
tcaagtgatg aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca 900
ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc atcaggaggc 960
agccaagtac gagaaccata ctgaaaatgc cttgttattg tatatggcat gtacgcatgc 1020
ctctaatcca gtgtatgcaa ctatgaaaat acgcatctat ttctatgatt caatatcaaa 1080
ttaataaaac ttatatttta tatcatgagt ttctgttaca tttattgtgt tttcaagtac 1140
atcatacaat acatgatcaa ctgctctgat tacattgtta atggaaatta caccaagaca 1200
atctaaatac ttaagaactt catagctaaa tactcttaag aaacgaccag tctgaggctg 1260
taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccatta ccttcctgat 1320
gttgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa atggcctctg 1380
gctgtgttct gttatcttga aatagagggg attgtttatc tcccagataa aaacgccatt 1440
ctctgcctga ggagcagtga tgagttcccc tgtgcgtgaa tccatgatta ttgcagttga 1500
ggtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt attgttttct 1560
tcttggatat cttgtgtttg accttgattg atacttgcga acagtggctc gtagagggtg 1620
acgaaggttg cattcttgag agcccaattt ttcaaggata tgtttttttc ttcgtctaga 1680
tattccctat atgaggaggt aggtcctgga ttgcagagga agatagtggg aattccccct 1740
ttaatttgaa tgggctttcc gtactttgtg ttgctttgcc agtccctctg ggcccccatg 1800
aattccttga agtgctttaa atagtgcggg tctacgtcat caatgacgtt gtaccacgca 1860
tcattactgt acacctttgg gcttaggtct agatgtccac ataaataatt atgtgggcct 1920
agagacctgg cccacattgt tttgcctgtt ctgctatcac cctcgatgat aatactatta 1980
ggtctccatg gccgcgcagc ggaagacatg acgttctctg acacccatac ttcaagttca 2040
tctggaactt gattaaaaga tgaagataaa aagggagaaa tatagggagc cggaggctcc 2100
tgaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata atcctttggg 2160
gccttctctt tcaatatatt gagggcctcg gattttctgc ctgaattgag tgcttcggca 2220
tatgcgtcgt tggcagattg ctgacctcct ctagctgatc tgctatcgat ttggaaaatt 2280
ccaaaatcaa tgaagtctcc gtctttctcc acgtaggtct tgacatctgt tgagctctta 2340
gctgcctgaa tgttcggatg gaaatgtgct gacctgcttg gagaggataa atcgaagaac 2400
cgttggttct tacattggta ctttccttcg aactggatga gaacatggag atgaggagac 2460
ccatcttcat gtagttcatg cgcaactcgt atgaatttct tgttagttgg tgtatttatg 2520
gcaagtaatt gggaaagtgc ttcttcttta gagagagaac aattaggata agtcaggaaa 2580
taatttttgg catttacttt aaatagacga ggcatggcta cagttatcgg tgtccctcaa 2640
agctctacag caatcggtgt atccggagtc ttatttatac ctagacacca atggctattt 2700
ggtaatttcg taaaagtata atgtaattca aatttcaaaa ttcaaaaatc aaatcattaa 2760
agcggccatc cgtataatat t 2781
//
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