Dbfetch
ID KC106645; SV 1; circular; genomic DNA; STD; VRL; 2781 BP. XX AC KC106645; XX DT 27-JUN-2013 (Rel. 117, Created) DT 15-MAY-2014 (Rel. 120, Last updated, Version 4) XX DE Tomato yellow leaf curl virus - Il isolate TYLCV-IL[IR:Boj:28-8], complete DE genome. XX KW . XX OS Tomato yellow leaf curl virus - Il OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RX DOI; 10.1007/s00705-013-1851-z. RX PUBMED; 24068582. RA Hosseinzadeh M.R., Shams-Bakhsh M., Osaloo S.K., Brown J.K.; RT "Phylogenetic relationships, recombination analysis, and genetic RT variability among diverse variants of tomato yellow leaf curl virus in Iran RT and the Arabian Peninsula: further support for a TYLCV center of RT diversity"; RL Arch. Virol. 159(3):485-497(2014). XX RN [2] RP 1-2781 RA Hosseinzadeh M.R., Shamsbakhsh M., Brown J.K., Kazempour-Osalou S.; RT ; RL Submitted (31-OCT-2012) to the INSDC. RL Plant Pathology Department, Tarbiat Modares University, Tehran, Iran XX DR MD5; 02a8126c6ebb8a3dbc70bff1ce4cb617. XX CC ##Assembly-Data-START## CC Assembly Method :: Chromas v. Lite 2.01 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus - Il" FT /host="Datura stramonium" FT /isolate="TYLCV-IL[IR:Boj:28-8]" FT /mol_type="genomic DNA" FT /country="Iran:Bojnurd" FT /collection_date="20-Aug-2011" FT /db_xref="taxon:66366" FT gene 148..498 FT /gene="V2" FT CDS 148..498 FT /codon_start=1 FT /gene="V2" FT /product="movement-like protein" FT /db_xref="GOA:R9WP33" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:R9WP33" FT /protein_id="AGO02102.1" FT /translation="MWDPLLNDFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLVRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKP" FT gene 308..1084 FT /gene="V1" FT CDS 308..1084 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:R9WPE8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:R9WPE8" FT /protein_id="AGO02107.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1081..1485) FT /gene="C3" FT CDS complement(1081..1485) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:R9WRX9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:R9WRX9" FT /protein_id="AGO02103.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFSYEVLKYLDCLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT gene complement(1226..1633) FT /gene="C2" FT CDS complement(1226..1633) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /db_xref="GOA:R9WNC5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:R9WNC5" FT /protein_id="AGO02104.1" FT /translation="MQPSSPSTSHCSQVSIKVKHKISKKKTIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1542..2615) FT /gene="C1" FT CDS complement(1542..2615) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:R9WNC0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:R9WNC0" FT /protein_id="AGO02106.1" FT /translation="MPRLFKINAKNYFLTYPNCSLSKEEALSQLLALNTPTNKKFIRVA FT HELHEDGSPHLHVLIQFEGKYQCKNQRFFDLSSPSRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFRIFQIDSRSARGGQQSANDAYAEALNSGRKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIIIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA FT SINQGQTQDIQEENNKA" FT gene complement(2171..2479) FT /gene="C4" FT CDS complement(2171..2479) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:R9WPA8" FT /protein_id="AGO02105.1" FT /translation="MNYMKMGLLISMFSSSSKESTNVRTNGSSIYPLQAGQHISIRTFR FT QLRAQQMSRPTWRKTETSLILEFSKSIADQLEEVSNLPTTHMPKHSIQAENPRPSIY" XX SQ Sequence 2781 BP; 772 A; 534 C; 603 G; 872 T; 0 other; accggatggc cgcgcctttt ctttttatgt ggtccccacg agtgttccgc atacgtcact 60 gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tatatatact 120 tggtccccaa gtattttgtc ttgcaatatg tgggacccac ttctaaatga ttttcctgaa 180 tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtctgt tgaggaaact 240 tacgagccca atacattggg ccacgattta gttagggatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggttcg 360 ccgaaggctg aacttcgaca gcccatacag cagccgtgct gctgtcccca ttgtccaagg 420 cacaaacaag cgacgatcat ggacgtacag gcccatgtac cgaaagccca gaatatacag 480 aatgtatcga agccctgatg ttccccgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcaacgg gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg 600 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga tatatttttt 660 aggtaaagtc tggatggatg aaaatatcaa gaagcagaat cacactaatc aggtcatgtt 720 cttcttagtc cgtgatagaa ggccctatgg aaacagccca atggattttg gacaggtttt 780 taatatgttc gataatgagc ccagtaccgc aaccgtgaag aatgatttgc gggatagatt 840 tcaagtgatg aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc atcaggaggc 960 agccaagtac gagaaccata ctgaaaatgc cttgttattg tatatggcat gtacgcatgc 1020 ctctaatcca gtgtatgcaa ctatgaaaat acgcatatat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt ttctgttaca tttattgtgt tttcaagtac 1140 atcatacaac acatgatcaa ctgctctgat tacattgtta atggaaatta caccaagaca 1200 atctaaatac ttaagaactt catagctaaa tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccatta ccttcctgat 1320 gttgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa atggcctctg 1380 gctgtgttct gttatcttga aatagagggg attgtttatc tcccagataa aaacgccatt 1440 ctctgcctga ggagcagtga tgagttcccc tgtgcgtgaa tccatgatta ttgcagttga 1500 ggtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt attgttttct 1560 tcttggatat cttgtgtttg accttgattg atacttgcga acagtggctc gtagagggtg 1620 acgaaggttg cattcttgag agcccaattt ttcaaggata tgtttttttc ctcgtctaga 1680 tattccctat atgaggaggt aggtcctgga ttgcagagga agatagtggg aattccccct 1740 ttaatttgaa tgggctttcc gtactttgtg ttgctttgcc agtccctctg ggcccccatg 1800 aattccttga agtgctttaa atagtgcggg tctacgtcat caatgacgtt gtaccacgca 1860 tcattactgt acacctttgg acttaggtct agatgtccac ataaataatt atgtgggcct 1920 agagacctgg cccacattgt tttccctgtt ctgctatcac cctcgatgat aatactatta 1980 ggtctccatg gccgcgcagc ggaagacatg acgttctctg acacccatac ttcaagttca 2040 tctggaactt gattaaaaga tgaagataaa aagggagaaa tataaggagc cggaggctcc 2100 tgaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata atcctttggg 2160 gccttctctt tcaatatatt gagggcctcg gattttctgc ctgaattgag tgcttcggca 2220 tatgcgtcgt tggcagattg ctgacctcct ctagctgatc tgctatcgat ttggaaaatt 2280 ctaaaatcaa tgaagtctcc gtctttctcc acgtaggtct tgacatctgt tgagctctta 2340 gctgcctgaa tgttcggatg gaaatgtgct gacctgcttg gagaggataa atcgaagaac 2400 cgttggttct tacattggta ctttccttcg aactggatga gaacatggag atgaggagac 2460 ccatcttcat gtagttcatg cgcaactcgt atgaatttct tgttagttgg tgtatttagg 2520 gcaagtaatt gggaaagtgc ttcttcttta gagagagaac aattaggata agtcaagaaa 2580 taatttttgg catttatttt aaatagacga ggcatggcta cagttatcgg tgtccctcaa 2640 agctctacag caatcggtgt atccggagtc ttatttatat ctagacacca atggctattt 2700 ggtaatttcg taaaagtata atgtaattca aaattcaaaa ttcaaaaatc aaatcattaa 2760 agcggccatc cgtataatat t 2781 //