ID KC106642; SV 1; circular; genomic DNA; STD; VRL; 2759 BP. XX AC KC106642; XX DT 27-JUN-2013 (Rel. 117, Created) DT 15-MAY-2014 (Rel. 120, Last updated, Version 4) XX DE Tomato yellow leaf curl virus - Il isolate TYLCV-IL[IR:Boj:28-3], complete DE genome. XX KW . XX OS Tomato yellow leaf curl virus - Il OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2759 RX DOI; 10.1007/s00705-013-1851-z. RX PUBMED; 24068582. RA Hosseinzadeh M.R., Shams-Bakhsh M., Osaloo S.K., Brown J.K.; RT "Phylogenetic relationships, recombination analysis, and genetic RT variability among diverse variants of tomato yellow leaf curl virus in Iran RT and the Arabian Peninsula: further support for a TYLCV center of RT diversity"; RL Arch. Virol. 159(3):485-497(2014). XX RN [2] RP 1-2759 RA Hosseinzadeh M.R., Shamsbakhsh M., Brown J.K., Kazempour-Osalou S.; RT ; RL Submitted (31-OCT-2012) to the INSDC. RL Plant Pathology Department, Tarbiat Modares University, Tehran, Iran XX DR MD5; 1d802db71c6e2d524fba40a57002ddd4. XX CC ##Assembly-Data-START## CC Assembly Method :: Chromas v. Lite 2.01 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2759 FT /organism="Tomato yellow leaf curl virus - Il" FT /host="Datura stramonium" FT /isolate="TYLCV-IL[IR:Boj:28-3]" FT /mol_type="genomic DNA" FT /country="Iran:Bojnurd" FT /collection_date="20-Aug-2011" FT /db_xref="taxon:66366" FT gene 148..498 FT /gene="V2" FT CDS 148..498 FT /codon_start=1 FT /gene="V2" FT /product="movement-like protein" FT /db_xref="GOA:R9WP33" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:R9WP33" FT /protein_id="AGO02084.1" FT /translation="MWDPLLNDFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLVRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKP" FT gene 308..1147 FT /gene="V1" FT CDS 308..1147 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:R9WPC0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:R9WPC0" FT /protein_id="AGO02085.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMIQYQINKIYILYHEFLLHLLCFQVHHTTHDQLL" FT gene complement(1059..1463) FT /gene="C3" FT CDS complement(1059..1463) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:R9WRX9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:R9WRX9" FT /protein_id="AGO02089.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFSYEVLKYLDCLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT gene complement(1204..1611) FT /gene="C2" FT CDS complement(1204..1611) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /db_xref="GOA:R9WNC5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:R9WNC5" FT /protein_id="AGO02086.1" FT /translation="MQPSSPSTSHCSQVSIKVKHKISKKKTIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1520..2593) FT /gene="C1" FT CDS complement(1520..2593) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:R9WPC6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:R9WPC6" FT /protein_id="AGO02088.1" FT /translation="MPRLFKINAKNYFLTYPNCSLSKEEALSQLLALNTPTNKKFIRVA FT HELHEDGSPHLHVLIQFEGKYQCKNQRFFDLSSPSRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGIFQIDSRSARGGQQSANDAYAEALNSGRKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIIIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA FT SINQGQTQDIQEENNKA" FT gene complement(2149..2457) FT /gene="C4" FT CDS complement(2149..2457) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:R9WPA8" FT /protein_id="AGO02087.1" FT /translation="MNYMKMGLLISMFSSSSKESTNVRTNGSSIYPLQAGQHISIRTFR FT QLRAQQMSRPTWRKTETSLILEFSKSIADQLEEVSNLPTTHMPKHSIQAENPRPSIY" XX SQ Sequence 2759 BP; 763 A; 532 C; 601 G; 863 T; 0 other; accggatggc cgcgcctttt ctttttatgt ggtccccacg agtgttccgc atacgtcact 60 gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tatatatact 120 tggtccccaa gtattttgtc ttgcaatatg tgggacccac ttctaaatga ttttcctgaa 180 tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtctgt tgaggaaact 240 tacgagccca atacattggg ccacgattta gttagggatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggttcg 360 ccgaaggctg aacttcgaca gcccatacag cagccgtgct gctgtcccca ttgtccaagg 420 cacaaacaag cgacgatcat ggacgtacag gcccatgtac cgaaagccca gaatatacag 480 aatgtatcga agccctgatg ttccccgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcaacgg gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg 600 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga tatatttttt 660 aggtaaagtc tggatggatg aaaatatcaa gaagcagaat cacactaatc aggtcatgtt 720 cttcttagtc cgtgatagaa ggccctatgg aaacagccca atggattttg gacaggtttt 780 taatatgttc gataatgagc ccagtaccgc aaccgtgaag aatgatttgc gggatagatt 840 tcaagtgatg aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc atcaggaggc 960 agccaagtac gagaaccata ctgaaaatgc cttgttattg tatatggcat gtacgcatgc 1020 ctctaatcca gtgtatgcaa ctatgattca atatcaaatt aataaaattt atattttata 1080 tcatgagttt ctgttacatt tattgtgttt tcaagtacat catacaacac atgatcaact 1140 gctctgatta cattgttaat ggaaattaca ccaagacaat ctaaatactt aagaacttca 1200 tagctaaata ctcttaagaa acgaccagtc tgaggctgta atgtcgtcca aattcggaag 1260 ttgagaaaac atttgtgaat ccccattacc ttcctgatgt tgtggttgaa tcttatctga 1320 atggaaatga tgtcgtggtt cattagaaat ggcctctggc tgtgttctgt tatcttgaaa 1380 tagaggggat tgtttatctc ccagataaaa acgccattct ctgcctgagg agcagtgatg 1440 agttcccctg tgcgtgaatc catgattatt gcagttgagg tggaggtagt atgagcagcc 1500 acagtctagg tctacacgct tacgccttat tgttttcttc ttggatatct tgtgtttgac 1560 cttgattgat acttgcgaac agtggctcgt agagggtgac gaaggttgca ttcttgagag 1620 cccaattttt caaggatatg tttttttcct cgtctagata ttccctatat gaggaggtag 1680 gtcctggatt gcagaggaag atagtgggaa ttcccccttt aatttgaatg ggctttccgt 1740 actttgtgtt gctttgccag tccctctggg cccccatgaa ttccttgaag tgctttaaat 1800 agtgcgggtc tacgtcatca atgacgttgt accacgcatc attactgtac acctttggac 1860 ttaggtctag atgtccacat aaataattat gtgggcctag agacctggcc cacattgttt 1920 tccctgttct gctatcaccc tcgatgataa tactattagg tctccatggc cgcgcagcgg 1980 aagacatgac gttctctgac acccatactt caagttcatc tggaacttga ttaaaagatg 2040 aagataaaaa gggagaaata taaggagccg gaggctcctg aaaaatccta tctaaatttg 2100 aacttaaatt atgaaattgt aaaatataat cctttggggc cttctctttc aatatattga 2160 gggcctcgga ttttctgcct gaattgagtg cttcggcata tgcgtcgttg gcagattgct 2220 gacctcctct agctgatctg ctatcgattt ggaaaattcc aaaatcaatg aagtctccgt 2280 ctttctccac gtaggtcttg acatctgttg agctcttagc tgcctgaatg ttcggatgga 2340 aatgtgctga cctgcttgga gaggataaat cgaagaaccg ttggttctta cattggtact 2400 ttccttcgaa ctggatgaga acatggagat gaggagaccc atcttcatgt agttcatgcg 2460 caactcgtat gaatttcttg ttagttggtg tatttagggc aagtaattgg gaaagtgctt 2520 cttctttaga gagagaacaa ttaggataag tcaagaaata atttttggca tttattttaa 2580 atagacgagg catggctaca gttatcggtg tccctcaaag ctctacagca atcggtgtat 2640 ccggagtctt atttatatct agacaccaat ggctatttgg taatttcgta aaagtataat 2700 gtaattcaaa attcaaaatt caaaaatcaa atcattaaag cggccatccg tataatatt 2759 //