ID KC106640; SV 1; circular; genomic DNA; STD; VRL; 2782 BP. XX AC KC106640; XX DT 27-JUN-2013 (Rel. 117, Created) DT 15-MAY-2014 (Rel. 120, Last updated, Version 4) XX DE Tomato yellow leaf curl virus - Il isolate TYLCV-IL[IR:Boj:23-A], complete DE genome. XX KW . XX OS Tomato yellow leaf curl virus - Il OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2782 RX DOI; 10.1007/s00705-013-1851-z. RX PUBMED; 24068582. RA Hosseinzadeh M.R., Shams-Bakhsh M., Osaloo S.K., Brown J.K.; RT "Phylogenetic relationships, recombination analysis, and genetic RT variability among diverse variants of tomato yellow leaf curl virus in Iran RT and the Arabian Peninsula: further support for a TYLCV center of RT diversity"; RL Arch. Virol. 159(3):485-497(2014). XX RN [2] RP 1-2782 RA Hosseinzadeh M.R., Shamsbakhsh M., Brown J.K., Kazempour-Osalou S.; RT ; RL Submitted (31-OCT-2012) to the INSDC. RL Plant Pathology Department, Tarbiat Modares University, Tehran, Iran XX DR MD5; cea9ecd809ae553090699c032a5512e2. XX CC ##Assembly-Data-START## CC Assembly Method :: Chromas v. Lite 2.01 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2782 FT /organism="Tomato yellow leaf curl virus - Il" FT /host="Datura stramonium" FT /isolate="TYLCV-IL[IR:Boj:23-A]" FT /mol_type="genomic DNA" FT /country="Iran:Bojnurd" FT /collection_date="20-Aug-2011" FT /db_xref="taxon:66366" FT gene 148..498 FT /gene="V2" FT CDS 148..498 FT /codon_start=1 FT /gene="V2" FT /product="movement-like protein" FT /db_xref="GOA:R9WP33" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:R9WP33" FT /protein_id="AGO02072.1" FT /translation="MWDPLLNDFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLVRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKP" FT gene 308..1084 FT /gene="V1" FT CDS 308..1084 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:R9WN74" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:R9WN74" FT /protein_id="AGO02073.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDS FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1081..1485) FT /gene="C3" FT CDS complement(1081..1485) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:R9WRX9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:R9WRX9" FT /protein_id="AGO02074.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFSYEVLKYLDCLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT gene complement(1226..1633) FT /gene="C2" FT CDS complement(1226..1633) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /db_xref="GOA:R9WPB3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:R9WPB3" FT /protein_id="AGO02075.1" FT /translation="MQPSSPSTSHCSQVSIKVKHKISNKKTIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1560..2615) FT /gene="C1" FT CDS complement(1560..2615) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:R9WRW5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:R9WRW5" FT /protein_id="AGO02077.1" FT /translation="MPRLFKINAKNYFLTYPNCSLSKEEALSQLLALNTPTNKKFIRVA FT HELHEDGSPHLHVLIQFEGKYQCKNQRFFDLSSPSRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGIFQIDSRSARGGQQSANDAYAEALNSGRKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIIIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNIFLKNWALKNATFVTLYEPLFA FT SINQGQTQDIQ" FT gene complement(2171..2479) FT /gene="C4" FT CDS complement(2171..2479) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:R9WPA8" FT /protein_id="AGO02076.1" FT /translation="MNYMKMGLLISMFSSSSKESTNVRTNGSSIYPLQAGQHISIRTFR FT QLRAQQMSRPTWRKTETSLILEFSKSIADQLEEVSNLPTTHMPKHSIQAENPRPSIY" XX SQ Sequence 2782 BP; 769 A; 533 C; 607 G; 873 T; 0 other; accggatggc cgcgcctttt ctttttatgt ggtccccacg agtgttccgc atacgtcacc 60 gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tatatatact 120 tggtccccaa gtattttgtc ttgcaatatg tgggacccac ttctaaatga ttttcctgaa 180 tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgaggaaact 240 tacgagccca atacattggg ccacgattta gttagggatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggttcg 360 ccgaaggctg aacttcgaca gcccatacag cagccgtgct gctgtcccca ttgtccaagg 420 cacaaacaag cgacgatcat ggacgtacag gcccatgtac cgaaagccca gaatatacag 480 aatgtatcga agccctgatg ttccccgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcaacgg gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg 600 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga tatatttttt 660 aggtaaagtc tggatggatg aaaatatcaa gaagcagaat cacactaatc aggtcatgtt 720 cttcttagtc cgtgatagaa ggccctatgg aaacagccca atggattttg gacaggtttt 780 taatatgttc gatagtgagc ccagtaccgc aaccgtgaag aatgatttgc gggataggtt 840 tcaagtgatg aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc atcaggaggc 960 agccaagtac gagaaccata ctgaaaatgc cttgttattg tatatggcat gtacgcatgc 1020 ctctaatcca gtgtatgcaa ctatgaaaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt ttctgttaca tttattgtgt tttcaagtac 1140 atcatataat acatgatcaa ctgctctgat tacattgtta atggaaatta caccaagaca 1200 atctaaatac ttaagaactt catagctaaa tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccatta ccttcctgat 1320 gttgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa atggcctctg 1380 gctgtgttct gttatcttga aatagagggg attgtttatc tcccagataa aaacgccatt 1440 ctctgcctga ggagcagtga tgagttcccc tgtgcgtgaa tccatgatta ttgcagttga 1500 ggtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt attgttttct 1560 tattggatat cttgtgtttg accttgattg atacttgcga acagtggctc gtagagggtg 1620 acgaaggttg catttttgag agcccaattt ttcaagaata tgtttttttc ctcgtctaga 1680 tattccctat atgaggaggt aggtcctgga ttgcagagga agatagtggg aattccccct 1740 ttaatttgaa tgggctttcc gtactttgtg ttgctttgcc agtccctctg ggcccccatg 1800 aattccttga agtgctttaa atagtgcggg tctacgtcat caatgacgtt gtaccacgca 1860 tcattactgt acacctttgg gcttaggtct agatgtccac ataaataatt atgtgggcct 1920 agagatctgg cccacattgt tttccctgtt ctgctatcac cctcgatgat aatactatta 1980 ggtctccacg gccgcgcagc ggaagacatg acgttctctg acacccatac ttcaagttca 2040 tctggaactt gattaaaaga tgaagataaa aatggagaaa tataaggagc tggaggctcc 2100 tgaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata atcctttggg 2160 gccttctctt tcaatatatt gagggcctcg gattttctgc ctgaattgag tgcttcggca 2220 tatgcgtcgt tggcagattg ctgacctcct ctagctgatc tgctatcgat ttggaaaatt 2280 ccaaaatcaa tgaagtctcc gtctttctcc acgtaggtct tgacatctgt tgagctctta 2340 gctgcctgaa tgttcggatg gaaatgtgct gacctgcttg gagaggataa atcgaagaac 2400 cgttggttct tacattggta ctttccttcg aactggatga gaacatggag atgaggagac 2460 ccatcttcat gtagttcatg cgcaactcgt atgaatttct tgttagttgg tgtatttagg 2520 gcaagtaatt gggaaagtgc ttcttcttta gagagagaac aattaggata agtcaggaaa 2580 taatttttgg catttatttt aaatagacga ggcatggtga aatgaatcgg tgtccctcaa 2640 agctctatgg caatcggtgt atccggtgtc ttacttatac ctagacaccc aatggctatt 2700 tggtaatttc gtaaaagtat aatgtaattc aaaattcaaa attcaaaaat caaatcatta 2760 aagcggccat ccgtataata tt 2782 //