ID KC106639; SV 1; linear; genomic DNA; STD; VRL; 2328 BP. XX AC KC106639; XX DT 27-JUN-2013 (Rel. 117, Created) DT 15-MAY-2014 (Rel. 120, Last updated, Version 4) XX DE Tomato yellow leaf curl virus - Il isolate TYLCV-IL[IR:Boj:23-1] DE nonfunctional viral genome; complete sequence. XX KW . XX OS Tomato yellow leaf curl virus - Il OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2328 RX DOI; 10.1007/s00705-013-1851-z. RX PUBMED; 24068582. RA Hosseinzadeh M.R., Shams-Bakhsh M., Osaloo S.K., Brown J.K.; RT "Phylogenetic relationships, recombination analysis, and genetic RT variability among diverse variants of tomato yellow leaf curl virus in Iran RT and the Arabian Peninsula: further support for a TYLCV center of RT diversity"; RL Arch. Virol. 159(3):485-497(2014). XX RN [2] RP 1-2328 RA Hosseinzadeh M.R., Shamsbakhsh M., Brown J.K., Kazempour-Osalou S.; RT ; RL Submitted (31-OCT-2012) to the INSDC. RL Plant Pathology Department, Tarbiat Modares University, Tehran, Iran XX DR MD5; b559d7e8c11a11d69fe3e777ef265f5f. XX CC ##Assembly-Data-START## CC Assembly Method :: Chromas v. Lite 2.01 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2328 FT /organism="Tomato yellow leaf curl virus - Il" FT /host="Datura stramonium" FT /isolate="TYLCV-IL[IR:Boj:23-1]" FT /mol_type="genomic DNA" FT /country="Iran:Bojnurd" FT /collection_date="20-Aug-2011" FT /note="nonfunctional viral genome" FT /db_xref="taxon:66366" FT gene 148..498 FT /gene="V2" FT CDS 148..498 FT /codon_start=1 FT /gene="V2" FT /product="movement-like protein" FT /db_xref="GOA:R9WP33" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:R9WP33" FT /protein_id="AGO02066.1" FT /translation="MWDPLLNDFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLVRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKP" FT gene 308..610 FT /gene="V1" FT CDS 308..610 FT /codon_start=1 FT /gene="V1" FT /product="non-functional coat protein" FT /db_xref="GOA:R9WN84" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:R9WN84" FT /protein_id="AGO02071.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGY" FT gene complement(627..1031) FT /gene="C3" FT CDS complement(627..1031) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:R9WRX9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:R9WRX9" FT /protein_id="AGO02068.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFSYEVLKYLDCLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT gene complement(772..1179) FT /gene="C2" FT CDS complement(772..1179) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /db_xref="GOA:R9WNC5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:R9WNC5" FT /protein_id="AGO02067.1" FT /translation="MQPSSPSTSHCSQVSIKVKHKISKKKTIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1088..2161) FT /gene="C1" FT CDS complement(1088..2161) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:R9WPA4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:R9WPA4" FT /protein_id="AGO02069.1" FT /translation="MPRLFKINAKNYFLTYPNCSLSKEEALSQLLALNTPTNKKFIRVA FT HELHEDGSPHLHVLIQFEGKYQCKNQRFFDLSSPSRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGIFQIDSRSARGGQQSANDAYAEALNSGRKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIIIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNIFLKNWALKNATFVTLYEPLFA FT SINQGQTQDIQEENNKA" FT gene complement(1717..2025) FT /gene="C4" FT CDS complement(1717..2025) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:R9WPA8" FT /protein_id="AGO02070.1" FT /translation="MNYMKMGLLISMFSSSSKESTNVRTNGSSIYPLQAGQHISIRTFR FT QLRAQQMSRPTWRKTETSLILEFSKSIADQLEEVSNLPTTHMPKHSIQAENPRPSIY" XX SQ Sequence 2328 BP; 625 A; 461 C; 504 G; 738 T; 0 other; accggatggc cgcgcctttt ctttttatgt ggtccccacg agtgttccgc atacgtcacc 60 gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tatatatact 120 tggtccccaa gtattttgtc ttgcaatatg tgggacccac ttctaaatga ttttcctgaa 180 tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgaggaaact 240 tacgagccca atacattggg ccacgattta gttagggatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggttcg 360 ccgaaggctg aacttcgaca gcccatacag cagccgtgct gctgtcccca ttgtccaagg 420 cacaaacaag cgacgatcat ggacgtacag gcccatgtac cgaaagccca gaatatacag 480 aatgtatcga agccctgatg ttccccgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcaacgg gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg 600 tggatattaa gcatactggt atcaaattaa taaaatttat attttatatc atgagtttct 660 gttacattta ttgtgttttc aagtacatca tataatacat gatcaactgc tctgattaca 720 ttgttaatgg aaattacacc aagacaatct aaatacttaa gaacttcata gctaaatact 780 cttaagaaac gaccagtctg aggctgtaat gtcgtccaaa ttcggaagtt gagaaaacat 840 ttgtgaatcc ccattacctt cctgatgttg tggttgaatc ttatctgaat ggaaatgatg 900 tcgtggttca ttagaaatgg cctctggctg tgttctgtta tcttgaaata gaggggattg 960 tttatctccc agataaaaac gccattctct gcctgaggag cagtgatgag ttcccctgtg 1020 cgtgaatcca tgattattgc agttgaggtg gaggtagtat gagcagccac agtctaggtc 1080 tacacgctta cgccttattg ttttcttctt ggatatcttg tgtttgacct tgattgatac 1140 ttgcgaacag tggctcgtag agggtgacga aggttgcatt tttgagagcc caatttttca 1200 agaatatgtt tttttcctcg tctagatatt ccctatatga ggaggtaggt cctggattgc 1260 agaggaagat agtgggaatt ccccctttaa tttgaatggg ctttccgtac tttgtgttgc 1320 tttgccagtc cctctgggcc cccatgaatt ccttgaagtg ctttaaatag tgcgggtcta 1380 cgtcatcaat gacgttgtac cacgcatcat tactgtacac ctttgggctt aggtctagat 1440 gtccacataa ataattatgt gggcctagag atctggccca cattgttttc cctgttctgc 1500 tatcaccctc gatgataata ctattaggtc tccacggccg cgcagcggaa gacatgacgt 1560 tctctgacac ccatacttca agttcatctg gaacttgatt aaaagatgaa gataaaaatg 1620 gagaaatata aggagctgga ggctcctgaa aaatcctatc taaatttgaa cttaaattat 1680 gaaattgtaa aatataatcc tttggggcct tctctttcaa tatattgagg gcctcggatt 1740 ttctgcctga attgagtgct tcggcatatg cgtcgttggc agattgctga cctcctctag 1800 ctgatctgct atcgatttgg aaaattccaa aatcaatgaa gtctccgtct ttctccacgt 1860 aggtcttgac atctgttgag ctcttagctg cctgaatgtt cggatggaaa tgtgctgacc 1920 tgcttggaga ggataaatcg aagaaccgtt ggttcttaca ttggtacttt ccttcgaact 1980 ggatgagaac atggagatga ggagacccat cttcatgtag ttcatgcgca actcgtatga 2040 atttcttgtt agttggtgta tttagggcaa gtaattggga aagtgcttct tctttagaga 2100 gagaacaatt aggataagtc aggaaataat ttttggcatt tattttaaat agacgaggca 2160 tggtgaaatg aatcggtgtc cctcaaagct ctatggcaat cggtgtatcc ggtgtcttac 2220 ttatacctag acacccaatg gctatttggt aatttcgtaa aagtataatg taattcaaaa 2280 ttcaaaattc aaaaatcaaa tcattaaagc ggccatccgt ataatatt 2328 //