ID   KC019301; SV 1; linear; genomic RNA; STD; VRL; 2216 BP.
XX
AC   KC019301;
XX
DT   12-DEC-2012 (Rel. 115, Created)
DT   12-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE   Cucumber mosaic virus segment RNA3, complete sequence.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2216
RA   Jin D.W.;
RT   ;
RL   Submitted (30-OCT-2012) to the INSDC.
RL   Huazhong Agricultural University, Huazhong Agricultural University,
RL   Zhengzhou Fengyang Street, Zhengzhou, Henan 430001, China
XX
DR   MD5; ce8ef666098c600e0ff538f24d54d899.
XX
CC   GenBank Accession Numbers KC019299-KC019301 represent the complete
CC   genome of Cucumber mosaic virus HB24.
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNASTAR v. 6.1.3
CC   Assembly Name         :: rna3
CC   Coverage              :: compeletly
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2216
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="RNA3"
FT                   /strain="HB24"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="2011"
FT                   /PCR_primers="fwd_name: rna3-f1, fwd_seq:
FT                   gtaatcttaccactgtgtgtgtgcg, fwd_name: rna3-2fnew2, fwd_seq:
FT                   cgctcgcctgttgaagtcg, rev_name: rna3-1rnew, rev_seq:
FT                   acggtagaatcaaatttcggcaa, rev_name: rna123r, rev_seq:
FT                   gttttcccagtcacgactggtctcctt"
FT                   /db_xref="taxon:12305"
FT   CDS             122..961
FT                   /codon_start=1
FT                   /product="3a protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:K9Y248"
FT                   /protein_id="AFZ38414.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDAGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMEIVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYVLTNSKINQNARSESEELNVESPPIAIGSSSASRSETFRPQVVNGL"
FT   CDS             1258..1914
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="cp"
FT                   /db_xref="GOA:Q9WA87"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:Q9WA87"
FT                   /protein_id="AFZ38415.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSAPSSADANFRVLSQQLSRLNKT
FT                   LAAGRPTINHPTFVGSERCRPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 2216 BP; 504 A; 522 C; 537 G; 653 T; 0 other;
     gtaatcttaa cactgtgtgt gtgcgtgtgt gtgtgtgtcg cgtcgtgtcg agtcgtgttg        60
     tccgcacatt tgagtcgtgc tgtccgcaca ttttcttttc agtgtgttag attgccgagg       120
     catggctttc caaggtacca gtaggacttt aactcaacag tcctcagcgg ctacgtctga       180
     cgatcttcaa aagatattat ttagccctga agccattaag aaaatggcta ctgagtgtga       240
     cctaggccgg catcattgga tgcgcgctga taatgctatt tcagtccggc ccctcgttcc       300
     cgaagtaacc cacggtcgta ttgcttcctt ctttaagtct ggatatgatg ctggtgaatt       360
     atgctctaaa ggatatatga gcgtccctca agtgttgtgt gctgttactc gaacagtttc       420
     taccgatgct gaagggtctt tgagaattta cctagctgat ttaggcgaca aggagttatc       480
     tcctatagat gggcaatgcg tttcattaca taaccatgat cttcccgctt tggtgtcttt       540
     ccagccgacg tatgattgtc ctatggaaat tgttgggaat cgcaagcggt gttttgctgt       600
     cgttattgaa agacatggtt atattgggta caccggcacc acagctagcg tgtgtagtaa       660
     ttggcaagca cggttttctt ctaagaataa caactacacg catatcgcag ctgggaagac       720
     tctagtactg ccattcaaca gattagctga gcaaacgaaa ccgtcagccg tcgctcgcct       780
     gttgaagtcg caattgaaca acatagaatc ttcgcaatac gtcttaacga attcgaagat       840
     taatcaaaat gcgcgcagtg agtccgagga attaaatgtt gagagccctc ctatcgcaat       900
     tgggagttct tccgcgtccc gctccgaaac cttcagaccg caggtggtta acggtcttta       960
     gtgctttcgt tgcgtattag tatataagta tatgtgagtc tgtacataat actatatcta      1020
     tagtgtcctg tgtgagttga tacagtagac aactgtgacg cgatgtcgtg ttgaggagag      1080
     agcacatctg gttctagtaa atccacatca tagctttgag gttcaattcc tcttgctccc      1140
     tgttgggacc ccttactttt tcatggatgc ttctccacga aattgcgttt cgtctactta      1200
     tcctaagagt atcgtgctgt gttttctctc ttgtgtgttg tagagttgag tcgagtcatg      1260
     gacaaatctg aatcaaccag tgctggtcgc aaccgtcggc gtcgtccgcg tcgtggttcc      1320
     cgctccgctc cctcctccgc ggatgctaac tttagagtcc tgtcgcaaca gctttcgcga      1380
     cttaataaga cgttagcagc tggtcgtcca actattaacc acccaacctt tgtgggtagt      1440
     gaacgctgta gacctgggta cacgttcaca tctataaccc ttaagccacc gaaaatagac      1500
     cgcgggtctt attatggtaa aaggttgttg cttcctgatt cagtcactga gttcgataag      1560
     aagcttgttt cgcgcattca aattcgagtt aatcctttgc cgaaatttga ttctaccgtg      1620
     tgggtgacgg tccgtaaagt tcctgcctcc tcggatctat ccgttgccgc catctctgct      1680
     atgtttgcgg acggagcctc accggtactg gtttatcagt acgctgcatc cggagtccaa      1740
     gccaacaaca agttgttgta tgatctttcg gcgatgcgcg ctgatattgg cgacatgaga      1800
     aagtacgccg tcctcgtgta ttcaaaagac gatgcgctcg agacggacga gttagtactt      1860
     catgttgaca ttgagcacca gcgtattccc acatctgggg tgctcccagt ttgaactcgt      1920
     gttttcccag aaccctccct ccgatttctg tggcgggagc tgagttggta gtgttactat      1980
     aaactgcctg aagtcgctaa acgctttgcg gtgaacgggt tgtccatcca gcttacggct      2040
     aaaatggtca gtcgtggaga aatccacgcc agtagactta caagtctctg aggtgccttt      2100
     gaaaccatct cctgggtttc ttcggaagga cttcggtccg tgtaccgcta gtacaagata      2160
     ctagctttag ggtacgggca tccctccact cttcgtgggg ttccaaaagg agacca          2216
//