ID KC019299; SV 1; linear; genomic RNA; STD; VRL; 3363 BP. XX AC KC019299; XX DT 12-DEC-2012 (Rel. 115, Created) DT 12-DEC-2012 (Rel. 115, Last updated, Version 1) XX DE Cucumber mosaic virus segment RNA1, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3363 RA Jin D.W.; RT ; RL Submitted (29-OCT-2012) to the INSDC. RL Huazhong Agricultural University, Huazhong Agricultural University, RL Zhengzhou Fengyang Street, Zhengzhou, Henan 430001, China XX DR MD5; 40e048ed283b50f29f6529fc7fdc3f11. XX CC GenBank Accession Numbers KC019299-KC019301 represent the complete CC genome of Cucumber mosaic virus HB24. CC ##Assembly-Data-START## CC Assembly Method :: DNAStar v. 6.1.3 CC Assembly Name :: RNA1 CC Coverage :: completely CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3363 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /strain="HB24" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="2011" FT /PCR_primers="fwd_name: rna12f1, fwd_seq: FT gtttatttacaagagcgtacggttcaa, fwd_name: rna1-1600f, fwd_seq: FT gagaagaatgggacgtgatatcatc, rev_name: rna1-1830r, rev_seq: FT catgtgatgggggaacgtgt, rev_name: rna1-2r, rev_seq: FT tggtctccttttggaggcccc" FT /db_xref="taxon:12305" FT CDS 94..3075 FT /codon_start=1 FT /product="1a protein" FT /db_xref="GOA:K9Y1X5" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:K9Y1X5" FT /protein_id="AFZ38411.1" FT /translation="MATSSFNINELVASHGDKGLLANALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLSVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTHPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRNAFSEDEDVTPLSGKINSTVFTRVRKFKTLVAFDFVNESTMSYVH FT DWENIKSFLTDQTYSYKGMTYGIERCVINAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRVLTSTLRETEEIAMRCYNDKKAWMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR FT PLRVFFSSVVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAFVATQ FT AVTDGKILAAQKAEKLAEKLAQPVIEVSDSPEASSPTLDDTADVCGREQEVSELDSLSA FT QTRSPITRIAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNIHFSTGRWMRPVPEGIVYSVGYNERGLGPKADGELYIVNSECVICNSES FT LSAVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAHDVRMALFKS FT SDSKEACTFVRTADSVLLNDCPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAICFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYMKW FT VSQSKVKRSVTSRAIASVTLVDLDSSRFYITMTQADKASLISRAKEMNLPKTFWDERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKKFSYCLVALTRHKVTFRYEYCGVLNGDLIAEC FT IARA" XX SQ Sequence 3363 BP; 837 A; 732 C; 824 G; 970 T; 0 other; gtttatttac aagagcgtac ggttcaatcc ctgccttcct tgttaactac cctttgaaac 60 ctctcttttc taatcttttc tttgtaaatt cctatggcga cgtcctcgtt caacatcaat 120 gaattggtag cctcccacgg cgataaagga ctactcgcga acgccctcgt tgataagaca 180 gctcatgagc agctcgagga gcaattacag catcaacgta gaggccgtaa ggtctacatt 240 cggaacgttc tgagtgtaaa ggattccgag gtcatccgga atcggtatgg aggaaagtac 300 gacctccatc ttacccagca ggagtttgct ccccacggcc tagctggtgc cctccgcttg 360 tgtgaaactc tcgattgtct agactctttc ccttcatcag gtctgcggca ggacctcgtc 420 ttagacttcg gaggaagttg ggtcacacat tacctccgcg gacataacgt acactgttgt 480 tcgccctgct tgggtatccg cgataaaatg cgccacgcgg aacgtttaat gaacatgcgc 540 aagatcatct tgaacgatcc acaacagttc gatggtcgac agccggattt ctgcactcat 600 cctgctgctg attgcaaagt acaagcccac tttgctatat ctattcatgg aggttacgat 660 atgggcttta gaggattatg tgaggcaatg aatgcacacg gaaccactat tttgaaggga 720 acgatgatgt tcgatggtgc gatgatgttt gacgaccagg gcgtaatacc cgagcttaat 780 tgtcagtgga ggaagattag gaatgctttc tccgaagatg aagacgtcac acctttgtct 840 ggtaaaatta attccacagt attcacccgc gtgcgtaaat tcaagacttt ggtagctttt 900 gactttgtca atgagtctac tatgtcttat gttcatgatt gggagaatat aaaatcgttt 960 ctgacggacc agacgtactc gtataaaggg atgacctatg gcatcgaacg ttgtgtcatt 1020 aatgcgggta tcatgacgta caagattatc ggtgtgcctg ggatgtgtcc acccgaactc 1080 attcgacatt gtatttggtt cccctctatt aaggactatg ttggtcttaa gattcccgcg 1140 tcgcaggact tggttgagtg gaaaacagta cgcgttttaa cgtcaacatt acgtgagact 1200 gaagagattg ctatgaggtg ttataatgat aagaaagcgt ggatggagca gtttaaggtc 1260 atcttaggtg ttctttccgc taagtcatct accattgtta ttaatggtat gtccatgcaa 1320 tctggcgaac ggatagatat taatgattat cattatatag gattcgccat tcttcttcac 1380 acaaaaatga agtacgaaca gttagggaag atgtatgata tgtggaatgc ttcgagtatc 1440 tcgaagtggt tcgcagcgtt aactcgtccg ctgcgtgtgt tcttctctag cgttgttcac 1500 gcgctgttcc cgactttgag accccgcgag gagaaagaat tcctgattaa gctctccacc 1560 tttgtgactt ttaacgaaga gtgctcgttt gatggtggag aggaatggga cgtgatatca 1620 tctgctgctt tcgttgctac gcaggctgtt accgatggga agattttggc cgcacagaag 1680 gctgagaagc tcgctgagaa gcttgcacaa cccgtgattg aggtatcgga cagtcctgaa 1740 gcgtcatctc caacgcttga tgatactgct gatgtttgtg gaagggagca agaagtttcg 1800 gaacttgatt ctttatcagc tcagacacgt tcccccatca ctagaattgc tgaaagggct 1860 actgctatgt tagagtatgc cgcttatgag aaacagctac acgacaccac agtgtctaat 1920 ttgaaacgaa tctggaacat ggcgggtggt gatgacaaga gaaattccct cgagggtaat 1980 ttgaagtttg ttttcgacac gtattttacc gttgatccca tggtgaatat tcatttctcc 2040 acgggtcggt ggatgcgtcc tgtacctgag ggaattgttt actctgttgg ttataatgaa 2100 cgcggtttag gtccgaaggc tgatggagag ctttacattg tcaatagtga gtgtgtgatt 2160 tgcaatagtg agtctttatc tgctgtcact cgctcacttc aagccccaac cggaactatt 2220 agtcaagtcg acggagttgc tggctgtggg aagaccacgg caataaaatc catttttgag 2280 ccgtccacag acatgatcgt taccgcgaat aagaaatccg cccacgatgt tcgtatggca 2340 ttgtttaaat cgtcggattc caaagaagcc tgcaccttcg ttcgtactgc cgattctgtc 2400 ctacttaatg actgtccgac cgttagtagg gttttggttg acgaggtcgt gctgcttcat 2460 tttggtcaat tgtgtgccgt gatgtctaag ctgaaggctg ttcgagctat atgttttggg 2520 gattcggagc agattgcttt ttcttctcgt gacgcctcgt ttgacatgcg tttctctaag 2580 attattcctg atgaaactag tgatgcggat actacattcc gtagcccaca agacgtcgtg 2640 ccgcttgtgc gtttaatggc tacgaaggct ctcccgaaag gaactcattc gaagtacatg 2700 aaatgggttt ctcaatctaa agtgaagaga tctgttacat ctcgtgccat cgctagtgtg 2760 acactggttg acctggattc ttccaggttt tatatcacga tgacccaagc tgataaggcc 2820 tcactgattt cgagagcgaa agagatgaat ctaccaaaga ctttctggga cgaaaggatc 2880 aaaaccgtgc atgaatctca aggcatttct gaagatcatg ttactttggt aagattgaag 2940 agcacaaagt gtgacctgtt caagaaattt tcatattgtc ttgttgcctt gacaagacac 3000 aaggtcacat tccgctacga gtattgtggt gtattgaacg gcgatttaat tgccgaatgt 3060 attgctcgtg cttagcggac tccctccttc gggcgggtgc tgagttggcg gtaatctaca 3120 aaccgtctga agtcactaaa cactttgtgg tgaacgggtt gtccatccag ctaacggcta 3180 aaatggtcag tcgtggagaa atatacgcca gtagacttac aagtctttga ggtgcccttg 3240 aaaccatctc ctaggtttct tcggaaggac ttcggtccgt gtaccgctag tacaagatac 3300 tagcttaggt acgggctacc ccccccttcc ccccatttta tgggggcctc caaaaggaga 3360 cca 3363 //