ID KC004128; SV 1; circular; genomic DNA; STD; VRL; 2648 BP. XX AC KC004128; XX DT 21-NOV-2012 (Rel. 114, Created) DT 23-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Macroptilium yellow spot virus isolate BR:Oaf12:11 segment DNA-A, complete DE sequence. XX KW . XX OS Macroptilium yellow spot virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2648 RX PUBMED; 23136367. RA Lima A.T., Sobrinho R.R., Gonzalez-Aguilera J., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT "Synonymous site variation due to recombination explains higher genetic RT variability in begomovirus populations infecting non-cultivated hosts"; RL J. Gen. Virol. 94(Pt 2):418-431(2013). XX RN [2] RP 1-2648 RA Lima A.T., Sobrinho R.R., Aguilera J.G., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT ; RL Submitted (24-OCT-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 9c3104a59512ef075bf7c6c7e248817c. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 4.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2648 FT /organism="Macroptilium yellow spot virus" FT /segment="DNA-A" FT /host="Phaseolus vulgaris" FT /isolate="BR:Oaf12:11" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2011" FT /clone="RC88-1" FT /db_xref="taxon:1129034" FT CDS 222..977 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:H8ZQV4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H8ZQV4" FT /protein_id="AFX60769.1" FT /translation="MVKRDAPWRHMAGTSKVSRNNNYSPRGGGGPKNNRASEWVNRPMY FT RKPRIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHVGKVICMSDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHRFHAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSILN" FT CDS complement(974..1372) FT /codon_start=1 FT /product="REN" FT /note="replication-enhancer protein" FT /db_xref="GOA:H8ZQT9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H8ZQT9" FT /protein_id="AFX60770.1" FT /translation="MDSRTGELITAHQAESGVYIWEISNPLYFKINHVEDPLYTTTRIY FT HVQIRFNHNLRRALALHKAYLNFQVWTTSLRASGTTYLVRFKYLVMLYLDRIGVISLNN FT VIRAVRFATDKSYVNYVLENHEIKYKFY" FT CDS complement(1119..1508) FT /codon_start=1 FT /product="TRAP" FT /note="transactivating protein" FT /db_xref="GOA:K7X091" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7X091" FT /protein_id="AFX60772.1" FT /translation="MRNSSSSTPPSIKVQHRAAKRRAIRRRRIDIDCGCSIYVHINCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDQPRGGSTIHDNQDIPRPDQVQPQPQESI FT GSPQGISQFPSLDDIPESFWDDIFS" FT CDS complement(1459..2505) FT /codon_start=1 FT /product="REP" FT /note="replication-associated protein" FT /db_xref="GOA:K7WKC8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K7WKC8" FT /protein_id="AFX60771.1" FT /translation="MPPPKRFRISAKNYFLTYPQCSLTKEAALEQILSLQTSSNKKFIK FT IARELHEDGQPHLHVLLQFEGKLICTNSRLFDLVSPTRSAHFHPNIQGAKSSSDVKSYV FT DKDGDTIEWGEFQVDARSARGGQQTANESYAKVLNAQNLDQALQILKEEQPKDFVLHHH FT NIRSNLERIFAKAPEPWVPPFHLSSFTNVPEEMQAWADDYFGRGAAARPERPISIIIEG FT DSRTGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDIAPQYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKSFLDKEENASLRQWTIHNAQFVFLN FT SPLYQGST" FT CDS complement(2091..2348) FT /codon_start=1 FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K7WMT4" FT /protein_id="AFX60773.1" FT /translation="MGSLISTSCFNLKGNSSAQIADCSTWYPQQDQHISIRTFRELNRA FT PTSSPTSTRMETPLNGENFRSMLVLQEVANRLQTSHTPRF" XX SQ Sequence 2648 BP; 694 A; 551 C; 607 G; 796 T; 0 other; accggatggc cgcgcgattt tttatgggcc ttttcttttg ggctcgttct tttggaccga 60 gtgtatttga attaaagtcg ttgtatttga attaaagtca gttattttat ttggtccaat 120 gaatatgcgt ctgactagct tagatattca caacttggtc cccaagttgg tggctaacgg 180 gtatatatgt taagaataac tgactacttc tttaattcag aatggttaag cgggacgccc 240 catggcgcca catggcagga acctcaaagg tttcccgcaa taacaactat tcccctcgtg 300 gaggtggagg tccaaaaaac aacagggcct ctgaatgggt taataggccc atgtacagaa 360 agcccaggat atatcggatg tacagaaccc ccgatgtgcc tagggggtgt gaaggcccat 420 gtaaggtcca gtcttttgaa cagcgtcacg atatatccca tgttggtaag gttatatgca 480 tgtctgacgt gacaagaggt aatggtatta cccatcgtgt tggaaaacgt ttttgtgtga 540 agtctgtata tattctaggt aagatatgga tggacgagaa catcaagttg aagaatcaca 600 cgaacagtgt gatgttttgg ttggtcagag acagaagacc ctatagctct cctatggact 660 ttggccaagt gttcaacatg tttgacaacg agcccagtac tgcaacggtt aagaacgatc 720 ttcgtgatcg ttttcaagtc atgcatcgat tccatgccaa agtcactggt ggacagtatg 780 cgagcaacga gcaagcaatt gtcaggcgtt tttggaaggt taacaatcat gttgtctaca 840 accaccaaga agcagggaaa tacgagaatc atacggagaa cgctttacta ttgtatatgg 900 catgtactca tgcctctaac cccgtgtatg caaccttaaa aattcggatc tatttttacg 960 attcgatact caattaataa aatttgtatt ttatttcatg attctccagt acataattta 1020 catatgattt gtccgttgca aatcgaacag ctctgattac attgttaagc gaaataacac 1080 ctattcgatc taagtacaac atgactaagt atttaaacct aactaaatat gtcgtcccag 1140 aagctctcag ggatgtcgtc cagacttgga aattgagata tgccttgtgg agagccaatg 1200 ctctcctgag gttgtggttg aacctgatct ggacgtggta tatcctggtt gtcgtgtata 1260 gtggatcctc cacgtggttg atcttgaaat aaaggggatt tgatatctcc cagatataga 1320 cgccactctc tgcctgatgt gcagtgatga gttcccctgt gcgtgaatcc atgtcctctg 1380 cagttgatat ggacgtatat ggagcacccg caatctatgt caattcgtct tctcctgatt 1440 gctctccttt tggccgctct atgttgaacc ttgatagagg ggggagttga ggaagacgaa 1500 ttgcgcattg tgtatcgtcc actgtctaag tgatgcgttt tcctctttgt cgaggaatga 1560 tttatagctg gcgccctcgc caggattgca aagcacaatg catgggattc cacctttaat 1620 ttgaactggc ttcccgtatt tgcaatttga ttgccagtcc ttttgagcac ctatcaattc 1680 tttccaatgc tttaacttta gatattgcgg tgcgatgtca tctatcacgt tatactgcac 1740 atcatttgaa tagacctttg aattgaaatc gaggtgacca ctcaagtaat tatgggaccc 1800 caatgcacgt gcccacatgg tcttgcccgt tcgagagtca ccctcgatga ttatactaat 1860 tggtctttcc ggccgcgcag cggcacctct cccaaaataa tcatccgccc aagcttgcat 1920 ctcctctggg acgttagtga acgaggagag gtgaaacgga ggaacccacg gttctggagc 1980 ctttgcaaat atacgctcta agttagagcg tatgttatga tgatgaagga caaaatcctt 2040 gggttgttct tccttcaaaa tttgaagggc ttgatcaagg ttctgtgcat ttagaacctt 2100 ggcgtatgac tcgtttgcag tctgttggcc acctcttgca gaacgagcat cgacctgaaa 2160 ttctccccat tcaatggtgt ctccatcctt gtcgacgtag gacttgacgt cggagctcga 2220 tttagctccc tgaatgttcg gatggaaatg tgctgatctt gttggggata ccaagtcgaa 2280 caatctgcta tttgtgcaga tgagtttccc ttcaaattga agcaggacgt ggagatgagg 2340 ctgcccatct tcgtgaagct ctcttgctat tttgatgaac ttcttgttag atgaagtttg 2400 taaggataat atctgttcaa gagcagcctc tttagttaac gagcactggg gatatgtgag 2460 gaaataattt ttggcagata ttctaaaacg ttttggcggt ggcattcttg taaatagaag 2520 gatgtcacca aatggttccg ctctaaaact ctatagcaat tggtgacatt ggtgtacaat 2580 atatactaga accctctata gaactctcaa tctcaatcac acacgtggcg gccatccgat 2640 ataatatt 2648 //