ID KC004110; SV 1; circular; genomic DNA; STD; VRL; 2648 BP. XX AC KC004110; XX DT 21-NOV-2012 (Rel. 114, Created) DT 23-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Macroptilium yellow spot virus isolate BR:Oaf22:11 segment DNA-A, complete DE sequence. XX KW . XX OS Macroptilium yellow spot virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2648 RX PUBMED; 23136367. RA Lima A.T., Sobrinho R.R., Gonzalez-Aguilera J., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT "Synonymous site variation due to recombination explains higher genetic RT variability in begomovirus populations infecting non-cultivated hosts"; RL J. Gen. Virol. 94(Pt 2):418-431(2013). XX RN [2] RP 1-2648 RA Lima A.T., Sobrinho R.R., Aguilera J.G., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT ; RL Submitted (24-OCT-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; aa8fa603eec0bb38c277ba7b6b5a08af. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 4.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2648 FT /organism="Macroptilium yellow spot virus" FT /segment="DNA-A" FT /host="Macroptilium lathyroides" FT /isolate="BR:Oaf22:11" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2011" FT /clone="RC60-5B" FT /db_xref="taxon:1129034" FT CDS 222..977 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:H8ZQT4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H8ZQT4" FT /protein_id="AFX60679.1" FT /translation="MVKRDAPWRHMAGTSKVSRNNNYSPRGGGGPKNNRASEWVNRPMY FT RKPRIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHVGKVICMSDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHRFYAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSILN" FT CDS complement(974..1372) FT /codon_start=1 FT /product="REN" FT /note="replication-enhancer protein" FT /db_xref="GOA:H8ZQS0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H8ZQS0" FT /protein_id="AFX60680.1" FT /translation="MDSRTGELITAHQAESGVYIWEISNPLYFKINNVEDPLHTMTRIY FT HVQIRFNHNLRKALALHKAYLNFQVWTISLRASGTTYLVRFKYLVMLYLERIGVISLNN FT VIRAVRFATDKSYVNYVLENHEIKFKFY" FT CDS complement(1119..1508) FT /codon_start=1 FT /product="TRAP" FT /note="transactivating protein" FT /db_xref="GOA:K7X033" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7X033" FT /protein_id="AFX60682.1" FT /translation="MRNSSSSTPPSIKVQHRAAKKRAIRRRRIDIDCGCSIYVHINCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDQQRRGSTSHNDQNIPRPDQVQPQPEESI FT GSPQGISQFPSLDDIPESFWDDIFS" FT CDS complement(1459..2505) FT /codon_start=1 FT /product="REP" FT /note="replication-associated protein" FT /db_xref="GOA:K7WK59" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K7WK59" FT /protein_id="AFX60681.1" FT /translation="MPPPKRFRISAKNYFLTYPQCSLTKEAALEQILSLQTSSNKKFIK FT IARELHEDGQPHLHVLLQFEGKLICTNSRLFDLVSPTRSTHFHPNIQGAKSSSDVKSYV FT DKDGDTIEWGEFQVDARSARGGQQTANESYAKVLNAQNLDQALQILKEEQPKDFVLHHH FT NIRSNLERIFAKAPEPWVPPFHLSSFTNVPEEMKAWADDYFGRGAAARPERPISIIIEG FT DSRTGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDIAPQYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKSFLDKEENASLRQWTIHNAKFVFLN FT SPLYQGST" FT CDS complement(2091..2348) FT /codon_start=1 FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K7WMN6" FT /protein_id="AFX60683.1" FT /translation="MGSLISTSCFNLKGNSSAQIADCSTWYPQQDQHISIRTFRELNRA FT PTSSPTSTRMETPSNGVNFRSMLVLQEVANRLQTSHTPRF" XX SQ Sequence 2648 BP; 693 A; 549 C; 605 G; 801 T; 0 other; accggatggc cgcgcgattt tttatgggcc ttttcttttg ggctcgttct tttggaccga 60 gtgtatttga attaaagtcg ttgcatttga attaaagtca gttattttag ttggtccaat 120 gaatatgcgt ctgactagct tagatatgca caacttggtc cccaagttgg tggctaacgg 180 gtatatatgt taagaataac tgactacttc tttaattcag aatggttaag cgggacgccc 240 catggcgcca catggcagga acctcaaagg tttcccgcaa taacaactat tcccctcgtg 300 gaggtggagg tccaaaaaac aacagggcct cggaatgggt taataggccc atgtacagaa 360 agcccaggat ctatcgtatg tacagaaccc ccgatgtgcc tagggggtgt gaaggcccat 420 gtaaggttca atcgtttgaa cagcgtcacg atatatccca tgttggtaag gttatatgta 480 tgtctgacgt gacaagaggt aatggtatta cccatcgtgt aggaaaacgt ttttgtgtta 540 agtctgtata tattctaggt aagatatgga tggacgagaa catcaagttg aagaatcaca 600 cgaacagtgt gatgttttgg ttggtcagag accggagacc ctatagctct cccatggact 660 ttggccaagt gttcaacatg tttgacaatg agcccagtac tgctacggtt aagaacgatc 720 ttcgtgatcg ttttcaagtt atgcatcgat tctatgccaa agtcactggt ggacagtatg 780 cgagcaacga gcaagcaatt gtcaggcgtt tttggaaggt caacaatcat gttgtctata 840 accaccaaga agcagggaaa tacgagaatc atacggagaa cgctctacta ctgtatatgg 900 catgtactca tgcctctaac cccgtgtatg caaccttaaa aattcggatc tatttttacg 960 attcgatact caattaataa aatttgaatt ttatttcatg attctccagt acataattta 1020 catatgattt gtctgttgca aatcgaacag ctcgtattac attgttaagc gaaataacac 1080 ctattcgttc taagtacaac atgactaaat atttaaatct aactaaatat gtcgtcccag 1140 aagctctcag ggatatcgtc cagacttgga aattgagata tgccttgtgg agagccaatg 1200 ctttcctcag gttgtggttg aacctgatct ggacgtggta tattctggtc attgtgtgaa 1260 gtggatcctc tacgttgttg atcttgaaat aaaggggatt tgatatctcc cagatataga 1320 cgccactctc tgcctgatgt gcagtgatga gttcccctgt gcgtgaatcc atgccctctg 1380 cagttgatat ggacgtatat ggagcacccg caatctatgt caattcgtct tctcctgatt 1440 gctctcttct tggccgctct atgttgaacc ttgatagagg ggggagttga ggaagacgaa 1500 tttcgcattg tgtatcgtcc actgtctaag tgatgcgttt tcctctttgt cgaggaatga 1560 tttatagctg gccccctcgc caggattgca aagcacaatg catgggattc cacctttaat 1620 ttgaactggc ttcccgtatt tgcaatttga ttgccagtcc ttttgagcac ctatcaattc 1680 tttccagtgc tttaacttta gatattgcgg tgcgatgtca tctatcacgt tgtactgcac 1740 atcatttgaa tagacctttg aattgaaatc gaggtgacca ctcaagtaat tatgggaccc 1800 caatgcacgt gcccacatgg tcttgcccgt tcgagagtca ccctcgatga ttatactaat 1860 tggtctttcc ggccgcgcag ctgcacctct cccaaaataa tcatccgccc aagctttcat 1920 ctcctctggg acgttagtga acgaggagag gtgaaacgga ggaacccacg gttctggagc 1980 ctttgcaaat atacgctcta agttagagcg tatgttatga tgatgaagga caaaatcctt 2040 gggttgttct tccttcaaaa tttgaagggc ttgatcaagg ttctgtgcat ttagaacctt 2100 ggcgtatgac tcgtttgcag tctgttggcc acctcttgca gaacgagcat cgacctgaaa 2160 ttcaccccat tcgatggtgt ctccatcctt gtcgacgtag gacttgacgt cggagctcga 2220 tttagctccc tgaatgttcg gatggaaatg tgttgatctt gttggggata ccaagtcgaa 2280 caatctgcta tttgtgcaga tgagtttccc ttcaaattga agcaggacgt ggagatgagg 2340 ctgcccatct tcgtgaagct ctcttgctat tttgatgaac ttcttgttag atgaagtttg 2400 taaggataat atctgttcaa gagcagcctc tttagttaac gagcactggg gatatgtgag 2460 gaaataattt ttggcagata ttctaaaacg tttgggcggt ggcattcttg taaatagaag 2520 gatgtcacca aatggttccg ctctaaaact ctatagcaat tggtgacatt ggtgtacaat 2580 atatactaga accctctata gaactctcaa tctcaatcac acacgtggcg gccatccgat 2640 ataatatt 2648 //