Dbfetch
ID KC004109; SV 1; circular; genomic DNA; STD; VRL; 2649 BP. XX AC KC004109; XX DT 21-NOV-2012 (Rel. 114, Created) DT 23-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Macroptilium yellow spot virus isolate BR:Oaf21:11 segment DNA-A, complete DE sequence. XX KW . XX OS Macroptilium yellow spot virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2649 RX PUBMED; 23136367. RA Lima A.T., Sobrinho R.R., Gonzalez-Aguilera J., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT "Synonymous site variation due to recombination explains higher genetic RT variability in begomovirus populations infecting non-cultivated hosts"; RL J. Gen. Virol. 94(Pt 2):418-431(2013). XX RN [2] RP 1-2649 RA Lima A.T., Sobrinho R.R., Aguilera J.G., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT ; RL Submitted (24-OCT-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 680f07837a8b36ae6fbd9cd7634e2ade. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 4.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2649 FT /organism="Macroptilium yellow spot virus" FT /segment="DNA-A" FT /host="Macroptilium lathyroides" FT /isolate="BR:Oaf21:11" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2011" FT /clone="RC59-3B" FT /db_xref="taxon:1129034" FT CDS 222..977 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:H8ZQT4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H8ZQT4" FT /protein_id="AFX60674.1" FT /translation="MVKRDAPWRHMAGTSKVSRNNNYSPRGGGGPKNNRASEWVNRPMY FT RKPRIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHVGKVICMSDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHRFYAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSILN" FT CDS complement(974..1372) FT /codon_start=1 FT /product="REN" FT /note="replication-enhancer protein" FT /db_xref="GOA:K7XDQ8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K7XDQ8" FT /protein_id="AFX60675.1" FT /translation="MDSRTGELITAHQAESGVYIWEISNPLYFKINHVEDPLYTTTRIY FT HVQIRFNHNLRRALALHKAYLNFQIWTTSLRASGTTYLVRFKYLVMLYLDRIGVISLNN FT VIRAVRFATDKSYVNNVLENHEIKFKIY" FT CDS complement(1119..1508) FT /codon_start=1 FT /product="TRAP" FT /note="transactivating protein" FT /db_xref="GOA:K7X029" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7X029" FT /protein_id="AFX60677.1" FT /translation="MRNSSSSTPPSIKVQHRAAKRRAIRRRRIDIDCGCSIYVHINCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDQPRGGSTIHDNQDIPRPDQVQPQPQESI FT GSPQGISQFPNLDDIPESFWDDIFS" FT CDS complement(1459..2505) FT /codon_start=1 FT /product="REP" FT /note="replication-associated protein" FT /db_xref="GOA:K7WK58" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K7WK58" FT /protein_id="AFX60676.1" FT /translation="MPLPKSFRINAKNYFLTYPQCSLTKEEALSQLLNLSVPTNKKFIK FT IARELHENGQPHLHVLIQFEGKFQCKNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYV FT EKDGDTIDWGEFQVDGRSARGGCQTINDTYAKALNASSAEEALQIIKEEQPQHFFLQHH FT NLVANASRIFQKAPEPWVPPFHLSSFTNVPEEMQAWADDYFGRGAAARPERPISIIIEG FT DSRTGKTMWARALGSHNYLSGHLDFNSRVYSNDVQYNVIDDIAPQYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKSFLDKEENASLRQWTIHNAQFVFLN FT SPLYQGST" FT CDS complement(2091..2354) FT /codon_start=1 FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K7WMN3" FT /protein_id="AFX60678.1" FT /translation="MKMGSLISTSSSSSKGNSSARITDSSTWYPQPGQHISIRTFRELN FT QAPTSSPTSRRTETPSIGGNFRSTEEVLEEVARRLTTHMPRR" XX SQ Sequence 2649 BP; 676 A; 548 C; 618 G; 807 T; 0 other; accggatggc cgcgcgattt tttatgggcc ttttcttttg ggctcgctct tttggaccga 60 gtgtatttga attaaagtca gtgtatttga attaaaggca gttattttat ttggtccaat 120 gaatatgcgt ctgactagct tagataatga caacttggta cccaagttgg tggctaacgg 180 gtatatatgt taagaataac tgactatttc tttaattcag aatggttaag cgggacgccc 240 catggcgcca catggcagga acctcaaagg tttcccgcaa taacaactat tctcctcgtg 300 gaggtggagg tccaaaaaac aacagggcct ctgaatgggt taataggccc atgtacagaa 360 agcccaggat atatcgtatg tacagaaccc ccgatgtgcc tagggggtgt gaaggcccgt 420 gtaaggtcca gtcatttgaa cagcgtcacg atatatccca tgttggtaag gttatatgta 480 tgtctgacgt gacaagaggt aatggtatta ctcatcgtgt aggaaaacgt ttttgtgtta 540 agtctgtata tattcttggt aagatatgga tggacgagaa catcaagttg aagaatcaca 600 cgaacagtgt gatgttttgg ttggtcagag accggagacc ctatagctcc ccgatggact 660 ttggccaagt gttcaacatg tttgacaacg agcctagtac tgctacggtt aagaacgatc 720 ttcgtgatcg ttttcaagtc atgcatcgat tctatgccaa agtcactggt ggacagtatg 780 cgagcaacga gcaagcaatt gtcaggcgtt tttggaaggt caacaatcat gttgtctaca 840 accatcaaga agcaggaaaa tacgagaatc atactgagaa cgccttatta ttgtatatgg 900 catgtactca tgcctctaac cccgtgtatg caacattaaa aattcggatc tatttttacg 960 attcgatact caattaataa attttgaatt ttatttcatg attctccagt acattattta 1020 catatgactt gtccgttgca aaacgaacag ctctgattac attgttaagc gaaataacac 1080 ctattcgatc taagtacaac atgactaagt atttaaacct aactaaatat gtcgtcccag 1140 aagctctcag ggatgtcgtc cagatttgga aattgagata tgccttgtgg agagccaatg 1200 ctctcctgag gttgtggttg aacctgatct ggacgtggta tatcctggtt gtcgtgtata 1260 gtggatcctc cacgtggttg atcttgaaat aaaggggatt tgatatctcc cagatataga 1320 cgccactctc tgcctgatgt gcagtgatga gttcccctgt gcgtgaatcc atgtcctctg 1380 cagttgatat ggacgtatat ggagcacccg caatctatgt caattcgtct tctcctgatt 1440 gctctccttt tggccgctct atgttgaacc ttgatagagg ggggagttga ggaagacgaa 1500 ttgcgcattg tgtatcgtcc actgtctaag tgatgcgttt tcctctttgt cgaggaatga 1560 tttatagctg gcgccctcgc caggattgca aagcacaatg catgggattc cacctttaat 1620 ttgaactggc ttcccgtatt tgcaatttga ttgccagtcc ttttgagcac ctatcaattc 1680 tttccagtgc tttaacttta gatattgcgg tgcgatgtca tctatcacgt tgtactgcac 1740 atcatttgaa tagacccttg aattgaaatc gaggtgacca ctcaagtaat tatgggaccc 1800 caatgcacgt gcccacatgg ttttgcccgt tcgagagtca ccctcgataa ttatgctaat 1860 tggtctttcc ggccgcgcag cggcacctct cccaaaatag tcatctgccc aagcttgcat 1920 ctcctctggc acgttagtga acgaggagag gtgaaacgga ggaacccacg gttctggagc 1980 cttctggaaa atgcgagaag catttgccac caagttatga tgttggagaa agaagtgctg 2040 tggttgctcc tctttaatta tttgcagtgc ttcttctgca gaagaagcgt ttaacgcctt 2100 ggcatatgtg tcgttaatcg tctggcaacc tcctctagca cttcttccgt cgacctgaaa 2160 ttccccccaa tcgatggtgt ctccgtcctt ctcgacgtag gacttgacgt cggagcttga 2220 tttagctccc tgaatgttcg gatggaaatg tgttgacctg gttggggata ccaggtcgaa 2280 gaatctgtta ttcttgcact ggaatttccc ttcgaactgg atgaggacgt ggagatgagg 2340 ctgcccattt tcatgaagct ccctggctat tttgatgaat ttcttattag tgggaactga 2400 taggtttaat aattgggaca gtgcttcctc ttttgtaaga gagcactgtg gataagtaag 2460 gaaataattt ttggcattta ttctaaaaga ctttgggagt ggcatatttt gtaaataagg 2520 cttggacacc gatcggggtc tctcaacttc tgtgctatgc aattggtgtc tggtgtctta 2580 tttatactag aaccctcaat agaactttgg atctcaatca cccacgtggc ggccatccga 2640 tataatatt 2649 //