ID KC004107; SV 1; circular; genomic DNA; STD; VRL; 2658 BP. XX AC KC004107; XX DT 21-NOV-2012 (Rel. 114, Created) DT 23-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Macroptilium yellow spot virus isolate BR:Oaf19:11 segment DNA-A, complete DE sequence. XX KW . XX OS Macroptilium yellow spot virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2658 RX PUBMED; 23136367. RA Lima A.T., Sobrinho R.R., Gonzalez-Aguilera J., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT "Synonymous site variation due to recombination explains higher genetic RT variability in begomovirus populations infecting non-cultivated hosts"; RL J. Gen. Virol. 94(Pt 2):418-431(2013). XX RN [2] RP 1-2658 RA Lima A.T., Sobrinho R.R., Aguilera J.G., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT ; RL Submitted (24-OCT-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 9297749c5203ef0d2ff62315022d098a. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 4.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2658 FT /organism="Macroptilium yellow spot virus" FT /segment="DNA-A" FT /host="Macroptilium lathyroides" FT /isolate="BR:Oaf19:11" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2011" FT /clone="RC56-5B" FT /db_xref="taxon:1129034" FT CDS 202..957 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:K7WFX4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:K7WFX4" FT /protein_id="AFX60664.1" FT /translation="MVKRDAPWRHMAGTSKVSRNNNYSPRGGGGPKSNRASEWVNRPMY FT RKPRIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHVGKVICMSDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVIHRFHAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSILN" FT CDS complement(954..1352) FT /codon_start=1 FT /product="REN" FT /note="replication-enhancer protein" FT /db_xref="GOA:H8ZQT9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:H8ZQT9" FT /protein_id="AFX60665.1" FT /translation="MDSRTGELITAHQAESGVYIWEISNPLYFKINHVEDPLYTTTRIY FT HVQIRFNHNLRRALALHKAYLNFQVWTTSLRASGTTYLVRFKYLVMLYLDRIGVISLNN FT VIRAVRFATDKSYVNYVLENHEIKYKFY" FT CDS complement(1099..1488) FT /codon_start=1 FT /product="TRAP" FT /note="transactivating protein" FT /db_xref="GOA:K7X091" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7X091" FT /protein_id="AFX60667.1" FT /translation="MRNSSSSTPPSIKVQHRAAKRRAIRRRRIDIDCGCSIYVHINCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDQPRGGSTIHDNQDIPRPDQVQPQPQESI FT GSPQGISQFPSLDDIPESFWDDIFS" FT CDS complement(1439..2485) FT /codon_start=1 FT /product="REP" FT /note="replication-associated protein" FT /db_xref="GOA:K7WK52" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K7WK52" FT /protein_id="AFX60666.1" FT /translation="MPQPRRFRIQSKNYFLTYPKCSISKEEALAQLLALETPTNKKYIR FT VCRELHGNGEPHLHALLQFEGKFTCTNCRFFDLRHPSHSNVCHGKYESCKSSSDAKSYI FT EKDGDYVEWGDFQIDGRSARGGQQTVNDTYAKALNASSAEEALQIIKEEQPQHFFLQHH FT NLVANASRIFQKATEPWVPPFHLSSFTNVPEEMQAWADDYFGRGAAARPERPISIIIEG FT DSRTGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDIAPQYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKSFLDKEENASLRLWTIHNAQFVFLN FT SPLYQGST" FT CDS complement(2071..2328) FT /codon_start=1 FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K7WMM8" FT /protein_id="AFX60668.1" FT /translation="MGSLISMLCCNSKVSSHARIADSSTCDIPVIQMFVMENTNHASHP FT PTPNHISRRTEITSNGVIFRSTDDLLEEVNRQLTIHMQRH" XX SQ Sequence 2658 BP; 695 A; 553 C; 607 G; 803 T; 0 other; accggatggc cgcgcgattt tttatgggcc ttttcttttg ggctcgttct tttggaccga 60 gtgaatttga attaaagtca gttattttgt ttggtccaat gaatatgcgt ctgactagct 120 tagataatga caacttggtc cccaagttgg tggctaacgg gtataaatgt taagaataac 180 tgactacttc tttaattcag aatggttaag cgggacgccc catggcgcca catggcagga 240 acctcaaagg tttcccgcaa taacaactat tctcctcgtg gaggtggagg tccaaaaagc 300 aacagggcct ctgaatgggt taataggccc atgtacagaa agcccaggat atatcggatg 360 tacagaaccc ctgatgtgcc tagagggtgt gaaggcccat gtaaggttca gtcttttgaa 420 cagcgtcacg atatatccca tgttggtaag gttatatgta tgtctgacgt gacaagaggt 480 aatggtatta cccatcgtgt aggaaaacgt ttttgtgtta agtctgtata tattctaggt 540 aagatatgga tggacgagaa catcaagttg aagaatcaca cgaacagtgt gatgttctgg 600 ttggtcagag acagaagacc ctatagctcc cctatggact ttggccaagt gttcaacatg 660 tttgacaatg agcccagtac tgctacggtt aagaacgatc ttcgtgatcg ttttcaagtc 720 attcatcgat tccatgccaa agtcactggt ggacagtatg cgagcaacga gcaagcaatt 780 gtcaggcgtt tttggaaggt caacaatcat gttgtctaca accaccaaga agcagggaaa 840 tacgagaatc atacggagaa cgccttacta ttgtatatgg catgtactca tgcctctaac 900 cccgtgtatg caaccttaaa aattcggatc tatttttacg attcgatact caattaataa 960 aatttatatt ttatttcatg attctccagt acataattta catatgattt gtccgttgca 1020 aatcgaacag ctctgattac attgttaagc gaaataactc ctattcgatc taggtacaac 1080 atgactaagt atttaaacct aactaaatat gtcgtcccag aagctctcag ggatgtcgtc 1140 cagacttgga aattgagata tgccttgtgg agagccaatg ctctcctgag gttgtggttg 1200 aacctgatct ggacgtggta tatcctggtt gtcgtgtata gtggatcctc cacgtggttg 1260 atcttgaaat aaaggggatt tgatatctcc cagatataga cgccactctc tgcctgatgt 1320 gcagtgatga gttcccctgt gcgtgaatcc atgtcctctg cagttgatat ggacgtatat 1380 ggagcacccg caatctatgt caattcgtct tctcctgatt gctctccttt tggccgctct 1440 atgttgaacc ttgatagagg ggggagttga ggaagacgaa ttgcgcattg tgtatcgtcc 1500 acagtctaag tgatgcgttt tcctctttgt cgaggaatga tttatagctg gcgccctcgc 1560 caggattgca aagcacaatg catgggattc cacctttaat ttgaactggc ttcccgtatt 1620 tgcaatttga ttgccagtcc ttttgagcac ctatcaattc tttccagtgc tttaacttta 1680 gatattgcgg tgcgatgtca tctatcacgt tgtactgcac atcatttgaa tagacctttg 1740 aattgaaatc gaggtgacca ctcaagtaat tatgggaccc caatgcacgt gcccacatgg 1800 tcttgcccgt tcgagagtca ccctcgatga ttatactaat tggtctttcc ggccgcgcag 1860 cggcacctct cccaaaataa tcatctgccc aagcttgcat ctcctctggg acgttagtga 1920 acgaggagag gtgaaacgga ggaacccacg gttctgtagc cttttggaaa atgcgagaag 1980 catttgccac caagttatga tgttggagaa agaagtgctg tggttgttcc tcctttatta 2040 tttgaagtgc ttcttcagca gaagaagcat ttaatgcctt tgcatatgta tcgttaactg 2100 tctgttgacc tcctcgagca gatcgtccgt cgatctgaaa atcaccccat tcgacgtaat 2160 ctccgtcctt ctcgatatat gatttggcgt cggaggatga cttgcatgat tcgtattttc 2220 catgacaaac atttgaatga ctgggatgtc gcaagtcgaa gaatctgcaa ttcgtgcatg 2280 tgaacttacc ttcgaattgc agcaaagcat ggagatgagg ctccccattt ccgtgtaatt 2340 ctctgcatac acggatatat tttttgttcg tgggtgtttc taaggctaga agttgagcaa 2400 gtgcctcttc tttggagata gagcacttgg gataagtaag gaaataattt ttggactgaa 2460 ttctaaaacg tctgggctgt ggcatatttg taaataaaaa gatgtctcca aatggcagtc 2520 ttgtaaatat tggagtgtct ctagttccgc tccgctcaaa cttgctctat ctattggaga 2580 ctggagtcaa tttatactag aaccctcaat agaacttcta atcgtgttcg cacacgtggc 2640 ggccatccgt ataatatt 2658 //