Dbfetch
ID KC004104; SV 1; circular; genomic DNA; STD; VRL; 2649 BP. XX AC KC004104; XX DT 21-NOV-2012 (Rel. 114, Created) DT 23-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Macroptilium yellow spot virus isolate BR:Oaf16:11 segment DNA-A, complete DE sequence. XX KW . XX OS Macroptilium yellow spot virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2649 RX PUBMED; 23136367. RA Lima A.T., Sobrinho R.R., Gonzalez-Aguilera J., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT "Synonymous site variation due to recombination explains higher genetic RT variability in begomovirus populations infecting non-cultivated hosts"; RL J. Gen. Virol. 94(Pt 2):418-431(2013). XX RN [2] RP 1-2649 RA Lima A.T., Sobrinho R.R., Aguilera J.G., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT ; RL Submitted (24-OCT-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 3a6c4d5c93212a41aab7c5727936fc8b. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 4.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2649 FT /organism="Macroptilium yellow spot virus" FT /segment="DNA-A" FT /host="Macroptilium lathyroides" FT /isolate="BR:Oaf16:11" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2011" FT /clone="RC173" FT /db_xref="taxon:1129034" FT CDS 222..977 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:H8ZQT4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:H8ZQT4" FT /protein_id="AFX60649.1" FT /translation="MVKRDAPWRHMAGTSKVSRNNNYSPRGGGGPKNNRASEWVNRPMY FT RKPRIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHVGKVICMSDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHRFYAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSILN" FT CDS complement(974..1372) FT /codon_start=1 FT /product="REN" FT /note="replication-enhancer protein" FT /db_xref="GOA:K7XDP3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K7XDP3" FT /protein_id="AFX60650.1" FT /translation="MDSRTGELITAHQAESGVYIWEISNPLYFKINHVEDPLHTTTRIY FT HVQIRFNHNLRRALALHKAYLNFQVWTISLRASGTTYLVRFKYLVMLYLERIGVISLNN FT VIRAVRFATDKSYVNYVLENHEIKFKFY" FT CDS complement(1119..1508) FT /codon_start=1 FT /product="TRAP" FT /note="transactivating protein" FT /db_xref="GOA:K7X015" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7X015" FT /protein_id="AFX60652.1" FT /translation="MRNSSSSTPPSIKVQHRAAKKRAIRRRRIDIDCGCSIYVHINCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDQPRGGSTSHDNQDIPRPDQVQPQPQESI FT GSPQGISQFPSLDDIPESFWDDIFS" FT CDS complement(1459..2505) FT /codon_start=1 FT /product="REP" FT /note="replication-associated protein" FT /db_xref="GOA:K7WK43" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K7WK43" FT /protein_id="AFX60651.1" FT /translation="MPLPKSFRINAKNYFLTYPQCSLTKEEALSQLLNLSVPTNKKFIK FT IARELHENGQPHLHVLIQFEGKFQCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYV FT EKDGDTIDWGEFQIDGRSARGGCQTINDTYAKALNASSAEEALQIIKEEQPQHFFLQHH FT NLVANASRIFQKAPEPWVPPFHLSSFTNVPEEMQAWADHYFGRGAAARPERPISIIIEG FT DSRTGKTMWARALGSHNYLSGHLDFNSKVFSNDVQYNIIDDIAPQYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKSFLDKEENASLRQWTIHNAKFVFLN FT SPLYQGST" FT CDS complement(2091..2354) FT /codon_start=1 FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K7WML9" FT /protein_id="AFX60653.1" FT /translation="MKMGSLISTSSSSSKGNSSAKITDSSTWYPQPGQHISIRTFKELN FT QAPTSSPTSRRTETPSIGGNFRSTEEVLEEVARRLTTHMPRR" XX SQ Sequence 2649 BP; 679 A; 543 C; 621 G; 806 T; 0 other; accggatggc cgcgcgattt tttatgggcc ttttcttttg ggctcgttct tttggaccga 60 gtgtatttga attaaagtcg ttgtatttga attaaagtca gttattttag ttggtccaat 120 gaatatgcgt ctgactagct tagatatgca caacttggtc cccaagttgg tggctgacgt 180 gtatatatgt taagaataac tgactacttc tttaattcag aatggttaag cgggacgccc 240 catggcgcca catggcagga acctcaaagg tttcccgcaa taacaactat tcccctcgtg 300 gaggtggagg tccaaaaaac aacagggcct ctgaatgggt taataggccc atgtacagaa 360 agcccaggat ctatcgtatg tacagaaccc ccgatgtgcc tagggggtgt gaaggcccat 420 gtaaggttca atcgtttgaa cagcgtcacg atatatccca tgttggtaag gttatatgta 480 tgtctgacgt gacaagaggt aatggtatta cccatcgtgt aggaaaacgt ttttgtgtta 540 agtctgtata tattctaggt aagatatgga tggacgagaa catcaagttg aagaatcaca 600 cgaacagtgt gatgttttgg ttggtcagag accggagacc ctatagctcc cctatggact 660 ttggccaagt gttcaacatg tttgacaatg agcccagtac tgctacggtt aagaacgatc 720 ttcgtgatcg ttttcaagtt atgcatcgat tctatgccaa agtcactggt ggacagtatg 780 cgagcaacga gcaagcaatt gtgaggcgtt tttggaaggt caacaatcat gttgtctaca 840 accaccaaga agcagggaaa tacgagaatc atacggagaa cgcactacta ctgtatatgg 900 catgtactca tgcctctaac cccgtgtatg caaccttaaa aattcggatc tatttttacg 960 attcgatact caattaataa aatttgaatt ttatttcatg attctccagt acataattta 1020 catatgattt gtctgttgca aatcgaacag ctctgattac attgttaagc gaaataacac 1080 ctattcgttc taagtacaac atgactaagt atttaaatct aactaaatat gtcgtcccag 1140 aagctctcag ggatatcgtc cagacttgga aattgagata tgccttgtgg agagccaatg 1200 ctctcctgag gttgtggttg aacctgatct ggacgtggta tatcctggtt gtcgtgtgaa 1260 gtggatcctc cacgtggttg atcttgaaat aaaggggatt tgatatctcc cagatataga 1320 cgccactctc tgcctgatgt gcagtgatga gttcccctgt gcgtgaatcc atgtcctctg 1380 cagttgatat ggacgtatat ggagcacccg caatctatgt caattcgtct tcgcctgatt 1440 gctctcttct tggccgctct atgttgaacc ttgatagagg ggggagttga ggaagacgaa 1500 tttcgcattg tgtatcgtcc actgtctaag tgatgcgttt tcctctttgt cgaggaatga 1560 tttatagctg gcgccctcgc caggattgca aagcacaatg catgggatac cacctttaat 1620 ttgaactggc ttgccatatt tgcaatttga ttgccagtcc ttttgagcac ctatcaattc 1680 tttccagtgc tttaacttta gatattgcgg tgcgatgtca tcaatgatgt tatactgtac 1740 atcatttgaa aagacctttg aattgaaatc gaggtgacca ctcaagtaat tatgggaccc 1800 caatgcacgt gcccacatgg tcttgcccgt tcgagagtca ccctcgatga ttatactaat 1860 tggtctctcc ggccgcgcag cggcacctct cccaaaatag tgatctgccc aagcttgcat 1920 ctcctctggg acgttagtga acgaggagag gtgaaacgga ggaacccacg gttctggagc 1980 cttctggaaa atgcgagaag catttgccac caagttatga tgttggagaa agaagtgctg 2040 tggttgctcc tctttaatta tttgcagtgc ttcttctgca gaagaagcgt ttaacgcctt 2100 ggcatatgtg tcgttaatcg tctggcaacc tcctctagca cttcttccgt cgatctgaaa 2160 ttccccccaa tcgatggtgt ctccgtcctt ctcgacgtag gacttgacgt cggagcttga 2220 tttagctcct tgaatgttcg gatggaaatg tgctgacctg gttggggata ccaggtcgaa 2280 gaatctgtta tttttgcact ggaatttccc ttcgaactgg atgaggacgt ggagatgagg 2340 ctgcccattt tcatgaagct ctctggctat tttgatgaat ttcttattag tgggaactga 2400 taggtttaat aattgggaca gtgcttcctc ttttgtaaga gagcactgtg gataagtaag 2460 gaaataattt ttggcattta ttctaaaaga ctttgggagt ggcatatttt gtaaataagg 2520 cttggacacc gatcggggtc tctcaacttc tgtgttatgc aattggtgtc tggtgtctta 2580 tatatactag aaccctcaat agaactttgg atctcaatca cccacgtggc ggccatccga 2640 tataatatt 2649 //