ID KC004080; SV 1; circular; genomic DNA; STD; VRL; 2593 BP. XX AC KC004080; XX DT 21-NOV-2012 (Rel. 114, Created) DT 23-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Tomato severe rugose virus isolate BR:Car226.3:08 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato severe rugose virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2593 RX PUBMED; 23136367. RA Lima A.T., Sobrinho R.R., Gonzalez-Aguilera J., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT "Synonymous site variation due to recombination explains higher genetic RT variability in begomovirus populations infecting non-cultivated hosts"; RL J. Gen. Virol. 94(Pt 2):418-431(2013). XX RN [2] RP 1-2593 RA Lima A.T., Sobrinho R.R., Aguilera J.G., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT ; RL Submitted (24-OCT-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 68380aa8b915c1016c4c234131b31c6d. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 4.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2593 FT /organism="Tomato severe rugose virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Car226.3:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /clone="DV226" FT /db_xref="taxon:158463" FT CDS 172..927 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:A7UMY2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A7UMY2" FT /protein_id="AFX60529.1" FT /translation="MPKRDAPWRLTAGTSKVSRSVNFSPRAGYGPKYNKAAEWVNRPMY FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDESIKLKNHTNSVMFWLVRDRRPYSTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNNVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(924..1322) FT /codon_start=1 FT /product="REN" FT /note="replication-enhancer protein" FT /db_xref="GOA:Q3HM69" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q3HM69" FT /protein_id="AFX60530.1" FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKINRVEDPMYTASRVY FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLTRFKYLVLLYLDRLGVISINN FT VIRAVRFATDKSYVNAVLENHSIKFKFY" FT CDS complement(1069..1458) FT /codon_start=1 FT /product="TRAP" FT /note="transactivating protein" FT /db_xref="GOA:K7WZH3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7WZH3" FT /protein_id="AFX60532.1" FT /translation="MRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGCSIYVHIDCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHREQSLPRPNTVQPQPEESI FT ASPQELPQLPDMDDFTDSFWDDIFN" FT CDS complement(1400..2458) FT /codon_start=1 FT /product="REP" FT /note="replication-associated protein" FT /db_xref="GOA:C1KG78" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C1KG78" FT /protein_id="AFX60531.1" FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKTLNTPTNKKFI FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKDVALQIIREKLPEKFLFQF FT HNLNSNLDRIFTRAPEPWAPTFPLSSFTSVPREMQAWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNHVEYNVIDDIAPHYLKLKHWKELLGA FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFL FT NTPLYQGTTQSC" FT CDS complement(2041..2304) FT /codon_start=1 FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C1KG79" FT /protein_id="AFX60533.1" FT /translation="MKMGSLISTCFFNLRATTAAKINDSSTWSPQQGQHISIRTFRELS FT HRPTSNPMSTRTEILSSGGNSKSTEEVLEAVARQLTTLPQKP" XX SQ Sequence 2593 BP; 661 A; 532 C; 601 G; 799 T; 0 other; accggatggc cgccgcgatt tttcacccct ttagtttcaa ttaaagtaaa gtgattgtct 60 gtggcccaat catattgggc ctgtcgagct tagatatttg taacaactta aggcccaagt 120 tgttaaacgg ctataaattg aacatacact ttacttttgc tttaattcaa aatgcctaag 180 cgtgatgccc catggcgttt aacggcggga acttcaaagg tttcccgctc tgtcaatttt 240 tctccccgtg caggatatgg acccaaatat aacaaggccg ctgagtgggt gaacaggccc 300 atgtacagga agcccaggat ctaccgtact ttgagaggcc cagatgttcc tagaggctgt 360 gaagggcctt gtaaggttca gtcttacgag tctcgtcatg atgtttccca tgtcgggaag 420 gtgatttgtg tgtctgacgt tacacgtggt aacggtatta ctcaccgtgt tggtaagcgt 480 ttctgcgtga agtctgtata tattttaggg aaggtatgga tggacgagag catcaagttg 540 aagaatcaca caaatagtgt gatgttctgg ttggttagag atcggagacc ttattcgaca 600 cctatggatt ttggccaggt gttcaacatg tttgacaacg agcctagcac tgcaactgtt 660 aagaacgatc ttcgggatcg ttttcaggtc atgcacaagt tttatgctaa ggttactggt 720 ggacagtatg ccagtaatga gcaggcatta gtgaagcgct tttggaaggt caacaacaac 780 gtagtctaca accatcagga ggcagggaaa tacgagaatc atactgagaa cgccttgcta 840 ttgtatatgg catgtactca tgcctctaac cccgtgtatg ctacattgaa aattcggatc 900 tatttttatg attcgattac taattaataa aatttaaatt ttattgaatg attttcgagt 960 acagcattta catatgattt gtctgttgcg aaacgaacag ctctgattac attattaatg 1020 gaaataacgc ctaaacgatc tagatacaat aagactaaat atttaaatct agttaaatat 1080 gtcgtcccag aagctgtcag tgaagtcgtc catatctgga agttgaggaa gctcttgtgg 1140 agatgcaatg ctctcctcag gttgtggttg aaccgtattt ggacgtggta gactctgctc 1200 gcggtgtaca ttggatcctc cactctgttt atcttgaaat agaggggatt tgatatctcc 1260 caaatataga cgccattctc tgcctgacgt gcagtgatga gttcccctgt gcgtgaatcc 1320 atgtcctctg cagtcgatgt gtacgtaaat agagcacccg cactctatat caattcgtcg 1380 tctcctgatt cctcgttttt tagcagctct gtgttgtacc ttgatagagg ggggtgttaa 1440 ggaagacgaa tttcgcattg tgctttgtcc aattatttag acttgcattt tcttctttgt 1500 cgaggaaaca tttatagctg gccccctcgc caggattgca aagcacgatg catgggatac 1560 cacctttaat ttgaactggc tttccgtatt tgcagtttga ttgccaatcc ttttgggccc 1620 caagcaattc tttccagtgc tttaacttta gatagtgcgg tgcgatgtca tcaatgacgt 1680 tatattcaac atgatttgaa taaaccctag gattgaaatc taggtgtcca ctcaaataat 1740 tatgggcccc taatgcacgt gcccacatcg tctttcccgt tcgagaatca ccttcaatga 1800 tgatactaat aggtcgttcc ggccgcgcag cggcacctct cccaaaatag tcatctgccc 1860 aagcttgcat ctctctcggt acgctagtga aagaggagag gggaaacgta ggggcccatg 1920 gctccggagc ccttgtaaat atcctatcta aattactatt tagattgtga aactgaaata 1980 agaacttttc aggcagcttc tcacggatta tctgcaaggc gacgtctttg gaaggtgcgt 2040 tcaaggcttc tgcggcagcg tcgttagctg tctggcaacc gcctctagca cttcttccgt 2100 cgatttggaa ttccccccac tcgatagtat ctccgtcctt gtcgacatag gatttgacgt 2160 cggacgatga cttagctctc tgaatgttcg gatggaaatg tgttgacctt gttggggaga 2220 ccaggtcgaa gaatcgttga ttttggcagc agtagttgcc ctcaaattga agaagcacgt 2280 ggagatgagg ctccccattt tcatggagct ccctgcaaac cttgatgaac tttttatttg 2340 taggagtgtt tagggttttt aattgggaaa gtgcttcttc tttcgataat gagcatttgg 2400 gatatgtgag gaaataattc ttcgctttta tttgaaagcg ctttggagct gatggcatat 2460 ttgtaaatat gactcctact accaattggt agctgctcta aaactcatat gaattggtag 2520 ttatggtagc tcttatatag tagaagttcc tttaaggata ttgctacacg tggcggccat 2580 ccgttataat att 2593 //