ID KC004076; SV 1; circular; genomic DNA; STD; VRL; 2593 BP.
XX
AC KC004076;
XX
DT 21-NOV-2012 (Rel. 114, Created)
DT 23-JAN-2013 (Rel. 115, Last updated, Version 2)
XX
DE Tomato severe rugose virus isolate BR:Car218.1:08 segment DNA-A, complete
DE sequence.
XX
KW .
XX
OS Tomato severe rugose virus
OC Viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2593
RX PUBMED; 23136367.
RA Lima A.T., Sobrinho R.R., Gonzalez-Aguilera J., Rocha C.S., Silva S.J.,
RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.;
RT "Synonymous site variation due to recombination explains higher genetic
RT variability in begomovirus populations infecting non-cultivated hosts";
RL J. Gen. Virol. 94(Pt 2):418-431(2013).
XX
RN [2]
RP 1-2593
RA Lima A.T., Sobrinho R.R., Aguilera J.G., Rocha C.S., Silva S.J.,
RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.;
RT ;
RL Submitted (24-OCT-2012) to the INSDC.
RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL Vicosa, Minas Gerais 36570-000, Brazil
XX
DR MD5; 2d311beb1bedf6a6941c3f4e8d956eb8.
XX
CC ##Assembly-Data-START##
CC Assembly Method :: DNAMAN v. 4.0
CC Sequencing Technology :: Sanger dideoxy sequencing
CC ##Assembly-Data-END##
XX
FH Key Location/Qualifiers
FH
FT source 1..2593
FT /organism="Tomato severe rugose virus"
FT /segment="DNA-A"
FT /host="Solanum lycopersicum"
FT /isolate="BR:Car218.1:08"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /collection_date="2008"
FT /clone="DV218"
FT /db_xref="taxon:158463"
FT CDS 171..926
FT /codon_start=1
FT /product="CP"
FT /note="coat protein"
FT /db_xref="GOA:A7UMY2"
FT /db_xref="InterPro:IPR000263"
FT /db_xref="InterPro:IPR000650"
FT /db_xref="UniProtKB/TrEMBL:A7UMY2"
FT /protein_id="AFX60509.1"
FT /translation="MPKRDAPWRLTAGTSKVSRSVNFSPRAGYGPKYNKAAEWVNRPMY
FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF
FT CVKSVYILGKVWMDESIKLKNHTNSVMFWLVRDRRPYSTPMDFGQVFNMFDNEPSTATV
FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNNVVYNHQEAGKYENHTENAL
FT LLYMACTHASNPVYATLKIRIYFYDSITN"
FT CDS complement(923..1321)
FT /codon_start=1
FT /product="REN"
FT /note="replication-enhancer protein"
FT /db_xref="GOA:Q3HM69"
FT /db_xref="InterPro:IPR000657"
FT /db_xref="UniProtKB/TrEMBL:Q3HM69"
FT /protein_id="AFX60510.1"
FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKINRVEDPMYTASRVY
FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLTRFKYLVLLYLDRLGVISINN
FT VIRAVRFATDKSYVNAVLENHSIKFKFY"
FT CDS complement(1068..1457)
FT /codon_start=1
FT /product="TRAP"
FT /note="transactivating protein"
FT /db_xref="GOA:K7WZH3"
FT /db_xref="InterPro:IPR000942"
FT /db_xref="UniProtKB/TrEMBL:K7WZH3"
FT /protein_id="AFX60512.1"
FT /translation="MRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGCSIYVHIDCRG
FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHREQSLPRPNTVQPQPEESI
FT ASPQELPQLPDMDDFTDSFWDDIFN"
FT CDS complement(1399..2457)
FT /codon_start=1
FT /product="REP"
FT /note="replication-associated protein"
FT /db_xref="GOA:K7WJP4"
FT /db_xref="InterPro:IPR001191"
FT /db_xref="InterPro:IPR001301"
FT /db_xref="InterPro:IPR022690"
FT /db_xref="InterPro:IPR022692"
FT /db_xref="UniProtKB/TrEMBL:K7WJP4"
FT /protein_id="AFX60511.1"
FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKTLNTPTNKKFI
FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY
FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKDVALQIIREKLPEKFLFQF
FT HNLNSNLDRIFTRAPEPWAHTFPLSSFTSVPREMQAWADDYFGRGAAARPERPISIIIE
FT GDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNHVEYNVIDDIAPHYLKLKHWKELLGA
FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFL
FT NTPLYQGTTQSC"
FT CDS complement(2040..2303)
FT /codon_start=1
FT /product="AC4"
FT /db_xref="InterPro:IPR002488"
FT /db_xref="UniProtKB/TrEMBL:C1KG79"
FT /protein_id="AFX60513.1"
FT /translation="MKMGSLISTCFFNLRATTAAKINDSSTWSPQQGQHISIRTFRELS
FT HRPTSNPMSTRTEILSSGGNSKSTEEVLEAVARQLTTLPQKP"
XX
SQ Sequence 2593 BP; 662 A; 530 C; 599 G; 802 T; 0 other;
accggatggc cgcgcgattt ttcacccctt tagtttcaat taaagtaaag tgattgtctg 60
tggcccaatc atattgggcc tgtcgagctt agatatttgt aacaacttaa ggcccaagtt 120
gttaaacggc tataaattga acatacactt tacttttgct ttaattcaaa atgcctaagc 180
gtgatgcccc atggcgttta acggcgggaa cttcaaaggt ttcccgctct gtcaattttt 240
ctccccgtgc aggatatgga cccaaatata acaaggccgc tgagtgggtg aacaggccca 300
tgtacaggaa gcccaggatc taccgtactt tgagaggccc agatgttcct agaggctgtg 360
aagggccttg taaggttcag tcttacgagt ctcgtcatga tgtttcccat gtcgggaagg 420
tgatttgtgt gtctgacgtt acacgtggta acggtattac tcaccgtgtt ggtaagcgtt 480
tctgcgtgaa gtctgtatat attttaggga aggtatggat ggacgagagc atcaagttga 540
agaatcacac aaatagtgtg atgttctggt tggttagaga tcggagacct tattcgacac 600
ctatggattt tggccaggtg ttcaacatgt ttgacaacga gcctagcact gcaactgtta 660
agaacgatct tcgggatcgt tttcaggtca tgcacaagtt ttatgctaag gttactggtg 720
gacagtatgc cagtaatgag caggcattag tgaagcgctt ttggaaggtc aacaacaacg 780
tagtctacaa ccatcaggag gcagggaaat acgagaatca tactgagaac gccttgctat 840
tgtatatggc atgtactcat gcctctaacc ccgtgtatgc tacattgaaa attcggatct 900
atttttatga ttcgattact aattaataaa atttaaattt tattgaatga ttttcgagta 960
cagcatttac atatgatttg tctgttgcga aacgaacagc tctgattaca ttattaatgg 1020
aaataacgcc taaacgatct agatacaata agactaaata tttaaatcta gttaaatatg 1080
tcgtcccaga agctgtcagt gaagtcgtcc atatctggaa gttgaggaag ctcttgtgga 1140
gatgcaatgc tctcctcagg ttgtggttga accgtatttg gacgtggtag actctgctcg 1200
cggtgtacat tggatcctcc actctgttta tcttgaaata gaggggattt gatatctccc 1260
aaatatagac gccattctct gcctgacgtg cagtgatgag ttcccctgtg cgtgaatcca 1320
tgtcctctgc agtcgatgtg tacgtaaata gagcacccgc actctatatc aattcgtcgt 1380
ctcctgattc ctcgtttttt agcagctctg tgttgtacct tgatagaggg gggtgttaag 1440
gaagacgaat ttcgcattgt gctttgtcca attatttaga cttgcatttt cttctttgtc 1500
gaggaaacat ttatagctgg ccccctcgcc aggattgcaa agcacgatgc atgggatacc 1560
acctttaatt tgaactggct ttccgtattt gcagtttgat tgccaatcct tttgggcccc 1620
aagcaattct ttccagtgct ttaactttag atagtgcggt gcgatgtcat caatgacgtt 1680
atattcaaca tgatttgaat aaaccctagg attgaaatct aggtgtccac tcaaataatt 1740
atgggcccct aatgcacgtg cccacatcgt ctttcccgtt cgagaatcac cttcaatgat 1800
gatactaata ggtcgttccg gccgcgcagc ggcacctctc ccaaaatagt catctgccca 1860
agcttgcatc tctctcggta cgctagtgaa agaggagagg ggaaacgtat gtgcccatgg 1920
ctccggagcc cttgtaaata tcctatctaa attactattt agattgtgaa actgaaataa 1980
gaacttttca ggcagcttct cacggattat ctgcaaggcg acgtctttgg aaggtgcgtt 2040
caaggcttct gcggcagcgt cgttagctgt ctggcaaccg cctctagcac ttcttccgtc 2100
gatttggaat tccccccact cgatagtatc tccgtccttg tcgacatagg atttgacgtc 2160
ggacgatgac ttagctctct gaatgttcgg atggaaatgt gttgaccttg ttggggagac 2220
caggtcgaag aatcgttgat tttggcagca gtagttgccc tcaaattgaa gaagcacgtg 2280
gagatgaggc tccccatttt catggagctc cctgcaaacc ttgatgaact ttttatttgt 2340
aggagtgttt agggttttta attgggaaag tgcttcttct ttcgataatg agcatttggg 2400
atatgtgagg aaataattct tcgcttttat ttgaaagcgc tttggagctg atggcatatt 2460
tgtaaatatg actcctacta ccaattggta gctgctctaa aactcatatg aattggtagt 2520
tatggtagct cttatatagt agaagttctc tttaaggata ttgctacacg tggcggacat 2580
ccgttataat att 2593
//
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