ID KC004073; SV 1; circular; genomic DNA; STD; VRL; 2598 BP. XX AC KC004073; XX DT 21-NOV-2012 (Rel. 114, Created) DT 23-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Tomato severe rugose virus isolate BR:Flo206:08 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato severe rugose virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2598 RX PUBMED; 23136367. RA Lima A.T., Sobrinho R.R., Gonzalez-Aguilera J., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT "Synonymous site variation due to recombination explains higher genetic RT variability in begomovirus populations infecting non-cultivated hosts"; RL J. Gen. Virol. 94(Pt 2):418-431(2013). XX RN [2] RP 1-2598 RA Lima A.T., Sobrinho R.R., Aguilera J.G., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT ; RL Submitted (24-OCT-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 257ecddd50f17f0fb0a2fa6d20221470. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 4.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2598 FT /organism="Tomato severe rugose virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Flo206:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /clone="DV206" FT /db_xref="taxon:158463" FT CDS 171..926 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:K7WFB8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K7WFB8" FT /protein_id="AFX60494.1" FT /translation="MPKRDAPWRLTAGTSKVSRSVNYSPRAGYGPKYNKAAEWVNRPMY FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDESIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYVSNEQALVKRFWKVNNNVVYNHQEAAKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(923..1321) FT /codon_start=1 FT /product="REN" FT /note="replication-enhancer protein" FT /db_xref="GOA:K7XD61" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K7XD61" FT /protein_id="AFX60495.1" FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKINRVEDPMYTMSRVY FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLTRFKYLVLLYLDRLGVISINN FT VIRAVRFATDKSYVNAVLENHSIKFKIY" FT CDS complement(1068..1457) FT /codon_start=1 FT /product="TRAP" FT /note="transactivating protein" FT /db_xref="GOA:K7WZG0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7WZG0" FT /protein_id="AFX60497.1" FT /translation="MRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGCSIYVHIDCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHHEQSLPRPNTVQPQPEESI FT ASPQELPQLPDMDDFTDSFWDDIFN" FT CDS complement(1399..2457) FT /codon_start=1 FT /product="REP" FT /note="replication-associated protein" FT /db_xref="GOA:K7WJM9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K7WJM9" FT /protein_id="AFX60496.1" FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKNLNTPTNKKFI FT KVCKELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTYFHPNIQRAKSSSDVKSY FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKDIALQIIREKLPEKFLFQF FT HNLNSNLDRIFTRAPEPWSHTFPLSSFTNVPREMQDWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNHVEYNVIDDIAPHYLKLKHWKELLGA FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFL FT NTPLYQGTTQSC" FT CDS complement(2040..2303) FT /codon_start=1 FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K7WM63" FT /protein_id="AFX60498.1" FT /translation="MKMGSLISTCFFNSKATTAAKINDSSTWSPQQGQHISIRTFRELS FT HRPTSSPMSTRTEILSSGGNSKSTEEVLEAAARQLTTLPQKP" XX SQ Sequence 2598 BP; 661 A; 519 C; 599 G; 819 T; 0 other; accggatggc cgcgcgattt ttcacccctt tattttcaat taaagtaatg tgattgtttg 60 tggcccaatc atattgggcc tgtcgagctt agatatttat aacaacttaa ggcccaagtt 120 gttaaacggc tataaattga acatgcactt tacttttgct ttaatccaaa atgcctaagc 180 gtgatgcccc atggcgttta acggcgggaa cttcaaaggt ttcccgctct gtcaattatt 240 ctcctcgtgc aggatatggg ccaaaatata acaaggccgc tgagtgggtc aacaggccca 300 tgtacaggaa gcccaggatc taccgtactt tgagaggccc agatgttcct agaggctgtg 360 aagggccttg taaggttcag tcttacgagt ctcgtcatga tgtttcccat gtcgggaagg 420 tgatttgtgt gtctgacgtt acacgtggta atggtattac tcaccgtgtt ggtaagcgtt 480 tctgcgtgaa gtctgtatat attttaggga aggtatggat ggacgagagc atcaagttga 540 aaaatcacac aaatagtgtg atgttctggt tggttagaga tcggagacct tatgggacac 600 ctatggattt tggccaggtg ttcaacatgt ttgacaacga gcctagcact gcaactgtta 660 agaacgatct tcgggatcgt tttcaggtca tgcacaagtt ttatgccaag gttactggcg 720 gacagtatgt cagtaatgag caggcattgg tgaagcgctt ttggaaggtc aacaacaacg 780 tggtctacaa ccatcaggag gcagcgaaat acgagaatca tactgaaaac gccttgttat 840 tgtatatggc atgtactcat gcctctaacc ccgtgtatgc tactttgaaa attcggatct 900 atttttatga ttcgattact aattaataaa ttttaaattt tattgaatga ttttcgagta 960 cagcatttac atatgatttg tctgttgcga aacgaacagc tctgattaca ttattaatgg 1020 aaataacgcc taatcgatct aggtacaata agactaaata tttaaatcta gttaaatatg 1080 tcgtcccaga agctgtcagt gaagtcgtcc atatctggaa gttgaggaag ctcttgtgga 1140 gatgcaatgc tctcctcagg ttgtggttga accgtatttg gacgtggtag actctgctca 1200 tggtgtacat tggatcctcc actctgttta tcttgaaata gaggggattt gatatctccc 1260 aaatatagac gccattctct gcctgacgtg cagtgatgag ttcccctgtg cgtgaatcca 1320 tgtcctctgc agtcgatgtg tacgtaaata gagcacccgc actctatatc aattcgtcgt 1380 ctcctgattc ctcgtttttt agcagctctg tgttgtacct tgatagaggg gggtgttaag 1440 gaagacgaat ttcgcattgt gctttgtcca attatttaga cttgcatttt cttctttgtc 1500 gaggaaacat ttatagctgg ccccctcgcc aggattgcaa agcacgatgc atgggatacc 1560 acctttaatt tgaactggct ttccgtattt gcagtttgat tgccagtcct tttgggcccc 1620 aagcaattct ttccagtgct ttaactttag atagtgcggt gctatgtcat caatgacgtt 1680 atattcaaca tgatttgaat aaaccctagg attgaaatct aagtgtccac tcaaataatt 1740 atgggcccct aatgcacgtg cccacatcgt ctttcctgtt cgagaatcac cttcaatgat 1800 gatactaata ggtcgttccg gccgcgcagc ggcacctctc ccaaaatagt catctgccca 1860 atcttgcatc tctctcggta cgttagtgaa agatgagagg ggaaacgtat gagaccatgg 1920 ctccggagcc cttgtaaata tcctatctaa attactattt agattgtgaa actgaaataa 1980 gaacttttca ggcagctttt cacggattat ctgtaaggcg atgtctttag aaggtgcgtt 2040 caaggcttct gcggcagcgt cgttagctgt ctggcagccg cctctagcac ttcttccgtc 2100 gatttggaat tccccccact cgatagtatc tccgtccttg tcgacatagg acttgacgtc 2160 ggacgatgac ttagctctct gaatgttcgg atggaaatat gttgaccttg ttggggagac 2220 caggtcgaag aatcgttgat tttggcagca gtagttgcct tcgaattgaa gaagcacgtg 2280 gagatgaggc tccccatttt catggagctc tttgcaaacc ttgatgaact tcttatttgt 2340 aggagtgttt aggtttttta attgggaaag tgcttcttct ttcgataatg agcatttggg 2400 atatgtgagg aaataattct ttgcttttat ttgaaagcgc tttggagctg atggcatatt 2460 tgtaaatatg actcttacta ccaattggta gctgctctaa aactcatatg aattggtagt 2520 tatggtagct cttatatagt agaagttctc tttaaggaga ttgtacacca cgtgtggggg 2580 gccatccgtt ataatatt 2598 //