ID KC004071; SV 1; circular; genomic DNA; STD; VRL; 2593 BP. XX AC KC004071; XX DT 21-NOV-2012 (Rel. 114, Created) DT 23-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Tomato severe rugose virus isolate BR:Flo202:08 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato severe rugose virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2593 RX PUBMED; 23136367. RA Lima A.T., Sobrinho R.R., Gonzalez-Aguilera J., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT "Synonymous site variation due to recombination explains higher genetic RT variability in begomovirus populations infecting non-cultivated hosts"; RL J. Gen. Virol. 94(Pt 2):418-431(2013). XX RN [2] RP 1-2593 RA Lima A.T., Sobrinho R.R., Aguilera J.G., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT ; RL Submitted (24-OCT-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 6935b9f7eac9643c1dd82c551d5c1221. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 4.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2593 FT /organism="Tomato severe rugose virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Flo202:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /clone="DV202" FT /db_xref="taxon:158463" FT CDS 171..926 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:K7WFA7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K7WFA7" FT /protein_id="AFX60484.1" FT /translation="MPKRDAPWRLTAGTSKVSRSVNYSPRAGYGPKYNKAAEWVNRPMY FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDETIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNNVVYNHQEAAKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(923..1321) FT /codon_start=1 FT /product="REN" FT /note="replication-enhancer protein" FT /db_xref="GOA:K7XD55" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K7XD55" FT /protein_id="AFX60485.1" FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKINRVEDPMYTTSRVY FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLTRFKYLVLLYLDRLGVISINN FT VIRAVRFATDKSYVNAVLENHSIKFKFY" FT CDS complement(1068..1457) FT /codon_start=1 FT /product="TRAP" FT /note="transactivating protein" FT /db_xref="GOA:K7WZG0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7WZG0" FT /protein_id="AFX60487.1" FT /translation="MRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGCSIYVHIDCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHHEQSLPRPNTVQPQPEESI FT ASPQELPQLPDMDDFTDSFWDDIFN" FT CDS complement(1399..2457) FT /codon_start=1 FT /product="REP" FT /note="replication-associated protein" FT /db_xref="GOA:K7WJM0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K7WJM0" FT /protein_id="AFX60486.1" FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKNLNTPTNKKFI FT KVCKELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKDVALQIIREKLPEKFLFQF FT HNLNANLDRIFTRAPEPWSPTFPLSSFTNVPREMQDWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNHVEYNVIDDIAPHYLKLKHWKELLGA FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLEKEENASLNNWTKHNAKFVFL FT NTPLYQGTTQSC" FT CDS complement(2040..2303) FT /codon_start=1 FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K7WM47" FT /protein_id="AFX60488.1" FT /translation="MKMGSLISTCFFNSKATTAAKINDSSTWSPQQGQHISIRTFRELS FT HRPTSSPMSTRTEILSSGGNSKSTEEVLEAAARQRTTLPQKP" XX SQ Sequence 2593 BP; 663 A; 521 C; 597 G; 812 T; 0 other; accggatggc cgcgcgattt ttcacccctt tattttcaat taaagtaaag tgattgtttg 60 tggcccaatc atattgggcc tgtcgagctt agatatttat aacaacttaa ggcccaagtt 120 gttaaacggc tataaattga acatgcactt tacttttgct ttaattcaaa atgcctaagc 180 gtgatgcccc atggcgttta acggcgggaa cttcaaaggt ttctcgttct gtcaattatt 240 ctcctcgtgc aggatatggg ccaaaatata acaaggccgc tgagtgggtc aacaggccca 300 tgtacaggaa gcccaggatc taccgtacct tgagaggccc agatgttcct agaggctgtg 360 aagggccttg taaggttcag tcttacgagt ctcgtcatga tgtttcccat gtcgggaagg 420 tgatttgtgt gtctgacgtt acacgtggta atggtattac tcaccgtgtt ggtaagcgtt 480 tctgcgtgaa gtctgtatat attttaggga aggtatggat ggacgagacc atcaagttga 540 aaaatcacac aaatagtgtg atgttctggt tggttagaga tcggagacct tatgggacac 600 ctatggattt tggccaggtg ttcaacatgt ttgacaacga gcctagcact gcaactgtta 660 agaacgatct tcgggatcgt tttcaggtca tgcacaagtt ttatgccaag gttactggtg 720 gacagtatgc cagtaatgag caggcattgg tgaagcgctt ttggaaggtc aacaacaacg 780 tggtctacaa ccatcaggag gcagcgaaat acgagaatca tactgaaaac gccttgttat 840 tgtatatggc atgtactcat gcctctaacc ccgtgtatgc tacattgaaa attcggatct 900 atttttatga ttcgattact aattaataaa atttaaattt tattgaatga ttttcgagta 960 cagcatttac atatgatttg tctgttgcga aacgaacagc tctgattaca ttattaatgg 1020 aaataacgcc taatcgatct aggtacaata agactaaata tttaaatcta gttaaatatg 1080 tcgtcccaga agctgtcagt gaagtcgtcc atatctggaa gttgaggaag ctcttgtgga 1140 gatgcaatgc tctcctcagg ttgtggttga accgtatttg gacgtggtag actctgctcg 1200 tggtgtacat tggatcctcc actctgttta tcttgaaata gaggggattt gatatctccc 1260 aaatatagac gccattctct gcctgacgtg cagtgatgag ttcccctgtg cgtgaatcca 1320 tgtcctctgc agtcgatgtg tacgtaaata gagcacccgc actctatatc aattcgtcgt 1380 ctcctgattc ctcgtttttt agcagctctg tgttgtacct tgatagaggg gggtgttaag 1440 gaagacgaat ttcgcattgt gctttgtcca attatttaga cttgcatttt cttctttctc 1500 gaggaaacat ttatagctgg ccccctcgcc aggattgcaa agcacgatgc atgggatacc 1560 acctttaatt tgaactggct ttccgtattt gcagtttgat tgccaatcct tttgggcccc 1620 aagcaattct ttccagtgct ttaactttag ataatgcggt gctatgtcat caatgacgtt 1680 atattcaaca tgatttgaat aaaccctagg attgaaatct aagtgtccac tcaaataatt 1740 atgggcccct aatgcacgtg cccacatcgt ctttcctgtt cgagaatcac cttcaatgat 1800 gatactaata ggtcgttccg gccgcgcagc ggcacctctc ccaaaatagt catctgccca 1860 atcttgcatc tctctcggta cgttagtgaa agaggagagg ggaaacgtag gagaccatgg 1920 ctccggagcc cttgtaaata tcctatctaa attagcattt agattgtgaa actgaaataa 1980 gaacttttca ggcagctttt cacggattat ctgtaaggcg acgtctttag aaggtgcgtt 2040 caaggcttct gcggcagcgt cgttcgctgt ctggcagccg cctctagcac ttcttccgtc 2100 gatttggaat tccccccact cgatagtatc tccgtccttg tcgacatagg acttgacgtc 2160 ggacgatgac ttagctctct gaatgttcgg atggaaatgt gttgaccttg ttggggagac 2220 caggtcgaag aatcgttgat tttggcagca gtagttgcct tcgaattgaa gaagcacgtg 2280 gagatgaggc tccccatttt catggagctc tttgcaaacc ttgatgaact tcttatttgt 2340 aggagtgttt aggtttttta attgggaaag tgcttcttct ttcgataatg agcatttggg 2400 atatgtgagg aaataattct tcgcttttat ttgaaagcgc tttggagctg atggcatatt 2460 tgtaaatatg actcttacta ccaattggta gctgctctaa aactcatatg aattggtagt 2520 tatggtagct cttatatagt agaagttctc tttaaggaga ttgatacacg tggcggccat 2580 ccgttataat att 2593 //