ID KC004070; SV 1; circular; genomic DNA; STD; VRL; 2594 BP. XX AC KC004070; XX DT 21-NOV-2012 (Rel. 114, Created) DT 23-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Tomato severe rugose virus isolate BR:Flo165:08 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato severe rugose virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2594 RX PUBMED; 23136367. RA Lima A.T., Sobrinho R.R., Gonzalez-Aguilera J., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT "Synonymous site variation due to recombination explains higher genetic RT variability in begomovirus populations infecting non-cultivated hosts"; RL J. Gen. Virol. 94(Pt 2):418-431(2013). XX RN [2] RP 1-2594 RA Lima A.T., Sobrinho R.R., Aguilera J.G., Rocha C.S., Silva S.J., RA Xavier C.A., Silva F.N., Duffy S., Zerbini F.M.; RT ; RL Submitted (24-OCT-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; eae09654df3caaeb4cf8ec25a8376b00. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 4.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2594 FT /organism="Tomato severe rugose virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Flo165:08" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2008" FT /clone="DV165" FT /db_xref="taxon:158463" FT CDS 172..927 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:K7WFA7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K7WFA7" FT /protein_id="AFX60479.1" FT /translation="MPKRDAPWRLTAGTSKVSRSVNYSPRAGYGPKYNKAAEWVNRPMY FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDETIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNNVVYNHQEAAKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(924..1322) FT /codon_start=1 FT /product="REN" FT /note="replication-enhancer protein" FT /db_xref="GOA:K7XD55" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K7XD55" FT /protein_id="AFX60480.1" FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKINRVEDPMYTTSRVY FT HVQIRFNHNLRRALHLHKSFLNFQIWTTSLTASGTTYLTRFKYLVLLYLDRLGVISINN FT VIRAVRFATDKSYVNAVLENHSIKFKFY" FT CDS complement(1069..1458) FT /codon_start=1 FT /product="TRAP" FT /note="transactivating protein" FT /db_xref="GOA:K7WZG0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7WZG0" FT /protein_id="AFX60482.1" FT /translation="MRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGCSIYVHIDCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSNVHHEQSLPRPNTVQPQPEESI FT ASPQELPQLPDMDDFTDSFWDDIFN" FT CDS complement(1400..2458) FT /codon_start=1 FT /product="REP" FT /note="replication-associated protein" FT /db_xref="GOA:K7WJL6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K7WJL6" FT /protein_id="AFX60481.1" FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKNLNTPTNKKFI FT KVCKELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKDVALQIIREKLPEKFLFQF FT HNLNANLDRIFTRAPEPWSPTFPLSSFTNIPREMQDWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNHVEYNVIDDIAPHYLKLKHWKELLGA FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLEKEENASLNNWTKHNAKFVFL FT NTPLYQGTTQSC" FT CDS complement(2041..2304) FT /codon_start=1 FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K7WM47" FT /protein_id="AFX60483.1" FT /translation="MKMGSLISTCFFNSKATTAAKINDSSTWSPQQGQHISIRTFRELS FT HRPTSSPMSTRTEILSSGGNSKSTEEVLEAAARQRTTLPQKP" XX SQ Sequence 2594 BP; 663 A; 519 C; 598 G; 814 T; 0 other; accggatggc cgcgcgattt ttgcacccct ttattttcaa ttaaagtaaa gtgattgttt 60 gtggcccaat catattgggc ttgttgagct tagatattta taacaactta aggcccaagt 120 tgttaaacgg ctataaattg aacatgcact ttacttttgc tttaattcaa aatgcctaag 180 cgtgatgccc catggcgttt aacggcggga acttcaaagg tttctcgttc tgtcaattat 240 tctcctcgtg caggatatgg gccaaaatat aacaaggccg ctgagtgggt caacaggccc 300 atgtacagga agcccaggat ctaccgtacc ttgagaggcc cagatgttcc tagaggctgt 360 gaagggcctt gtaaggttca gtcttacgag tctcgtcatg atgtttccca tgtcgggaag 420 gtgatttgtg tgtctgacgt tacacgtggt aatggtatta ctcaccgtgt tggtaagcgt 480 ttctgcgtga agtctgtata tattttaggg aaggtatgga tggacgagac catcaagttg 540 aaaaatcaca caaatagtgt gatgttctgg ttggttagag atcggagacc ttatgggaca 600 cctatggatt ttggccaggt gttcaacatg tttgacaacg agcctagcac tgcaactgtt 660 aagaacgatc ttcgggatcg ttttcaggtc atgcacaagt tttatgccaa ggttactggt 720 ggacagtatg ccagtaatga gcaggcattg gtgaagcgct tttggaaggt caacaacaac 780 gtggtctaca accatcagga ggcagcgaaa tacgagaatc atactgaaaa cgccttgtta 840 ttgtatatgg catgtactca tgcctctaac cccgtgtatg ctacattgaa aattcggatc 900 tatttttatg attcgattac taattaataa aatttaaatt ttattgaatg attttcgagt 960 acagcattta catatgattt gtctgttgcg aaacgaacag ctctgattac attattaatg 1020 gaaataacgc ctaatcgatc taggtacaat aagactaaat atttaaatct agttaaatat 1080 gtcgtcccag aagctgtcag tgaagtcgtc catatctgga agttgaggaa gctcttgtgg 1140 agatgcaatg ctctcctcag gttgtggttg aaccgtattt ggacgtggta gactctgctc 1200 gtggtgtaca ttggatcctc cactctgttt atcttgaaat agaggggatt tgatatctcc 1260 caaatataga cgccattctc tgcctgacgt gcagtgatga gttcccctgt gcgtgaatcc 1320 atgtcctctg cagtcgatgt gcacgtaaat agagcacccg cactctatat caattcgtcg 1380 tctcctgatt cctcgttttt tagcagctct gtgttgtacc ttgatagagg ggggtgttaa 1440 ggaagacgaa tttcgcattg tgctttgtcc aattatttag acttgcattt tcttctttct 1500 cgaggaaaca tttatagctg gccccctcgc caggattgca aagcacgatg catgggatac 1560 cacctttaat ttgaactggc tttccgtatt tgcagtttga ttgccaatcc ttttgggccc 1620 caagcaattc tttccagtgc tttaacttta gataatgcgg tgctatgtca tcaatgacgt 1680 tatattcaac atgatttgaa taaaccctag gattgaaatc taagtgtcca ctcaaataat 1740 tatgggcccc taatgcacgt gcccacatcg tctttcctgt tcgagaatca ccttcaatga 1800 tgatactaat aggtcgttcc ggccgcgcag cggcacctct cccaaaatag tcatctgccc 1860 aatcttgcat ctctctcggt atgttagtga aagaggagag gggaaacgta ggagaccatg 1920 gctccggagc ccttgtaaat atcctatcta aattagcatt tagattgtga aactgaaata 1980 agaacttttc aggcagcttt tcacggatta tctgtaaggc gacgtcttta gaaggtgcgt 2040 tcaaggcttc tgcggcagcg tcgttcgctg tctggcagcc gcctctagca cttcttccgt 2100 cgatttggaa ttccccccac tcgatagtat ctccgtcctt gtcgacatag gacttgacgt 2160 cggacgatga cttagctctc tgaatgttcg gatggaaatg tgttgacctt gttggggaga 2220 ccaggtcgaa gaatcgttga ttttggcagc agtagttgcc ttcgaattga agaagcacgt 2280 ggagatgagg ctccccattt tcatggagct ctttgcaaac cttgatgaac ttcttatttg 2340 taggagtgtt taggtttttt aattgggaaa gtgcttcttc tttcgataat gagcatttgg 2400 gatatgtgag gaaataattc ttcgctttta tttgaaagcg ctttggagct gatggcatat 2460 ttgtaaatat gactcttact accaattggt agctgctcta aaactcatat gaattggtag 2520 ttatggtagc tcttatatag tagaagttct ctttaaggag attgatacac gtggcggcca 2580 tccgttataa tatt 2594 //