ID K02715; SV 1; linear; genomic DNA; STD; VRL; 3311 BP. XX AC K02715; XX DT 02-JUL-1986 (Rel. 09, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 3) XX DE Ground squirrel hepatitis virus (GSHV), complete genome. XX KW complete genome. XX OS Ground squirrel hepatitis virus OC Viruses; Hepadnaviridae; Orthohepadnavirus. XX RN [1] RP 1-3311 RX PUBMED; 6086950. RA Seeger C., Ganem D., Varmus H.E.; RT "Nucleotide sequence of an infectious molecularly cloned genome of ground RT squirrel hepatitis virus"; RL J. Virol. 51(2):367-375(1984). XX DR MD5; 80e7a83d7b13396b89696eaf4b520d0f. DR EPD; EP11216; GSHV_35KB_2. DR EPD; EP11218; GSHV_35KB_1. DR EPD; EP11220; GSHV_23_1. DR EPD; EP11222; GSHV_23_2. DR EuropePMC; PMC113909; 11119585. DR EuropePMC; PMC3020508; 21084467. DR EuropePMC; PMC4269919; 25495746. DR GOA; P0C6J1. DR InterPro; IPR002006; Hepatitis_core. DR InterPro; IPR036459; Viral_capsid_core_dom_sf_HBV. DR RFAM; RF01047; HBV_epsilon. DR UniProtKB/Swiss-Prot; P0C6J1; CAPSD_GSHV. XX CC The coding regions in this sequence were determined by comparison CC with hepatitis B virus. The amino terminus of the cAg and pre-S CC genes are ambiguous since several in-frame start codons are found. CC The first was arbitrarily represented as the start for cAg; the CC final for pre-S, on the basis of homology to hepatitis B [1]. XX FH Key Location/Qualifiers FH FT source 1..3311 FT /organism="Ground squirrel hepatitis virus" FT /mol_type="genomic DNA" FT /db_xref="taxon:10406" FT CDS 1..654 FT /codon_start=1 FT /note="core antigen" FT /db_xref="GOA:P03153" FT /db_xref="InterPro:IPR002006" FT /db_xref="InterPro:IPR013195" FT /db_xref="InterPro:IPR036459" FT /db_xref="UniProtKB/Swiss-Prot:P03153" FT /protein_id="AAA46755.1" FT /translation="MYLFHLCLVFACVPCPTVQASKLCLGWLWDMDIDPYKEFGSSYQL FT LNFLPLDFFPDLNALVDTAAALYEEELTGREHCSPHHTAIRQALVCWEELTRLITWMSE FT NTTEEVRRIIVDHVNNTWGLKVRQTLWFHLSCLTFGQHTVQEFLVSFGVWIRTPAPYRP FT PNAPILSTLPEHTVIRRRGGSRAARSPRRRTPSPRRRRSQSPRRRRSQSPASNC" FT CDS 494..3139 FT /codon_start=1 FT /note="A protein" FT /db_xref="GOA:P03161" FT /db_xref="InterPro:IPR000201" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001462" FT /db_xref="InterPro:IPR037531" FT /db_xref="UniProtKB/Swiss-Prot:P03161" FT /protein_id="AAA46756.1" FT /translation="MHPFYQLFRNIQSLGEEEVQELLGPPEDALPLLAGEGLNHRVADA FT LNLQLPTADLEWIHKTNVITGLYSTQTEKFNCNWKQPVFPKIHLDNNLFQKLENYFGPL FT TTNEKRRLKLVFPARFFPNATKYFPLLKGIKDKYPNYTIEHFFAAANYLWTLWESGILY FT LRKNQTTLTFRGKPYSWEHRQLEQHNGQQHKSNIRSQQISCMVANSGNLLYTHYHRDKS FT SNIQTRNLSDNVFKKSKESTRVRCYTYDKIQRNRLGQLARIPCESKAPSEQQQSSLRSK FT GRDFRNQIQAYNSSRNKGYTTWHSTTSDSIQSGSKKKTHTSNSSFERHTPSFDNEKSDR FT SPAGICRGTESSNHLRSSQLCLWRSFYYTKPCGTYCLHHIVSSIDDWGPCTFDGDVTIR FT SPRTPRRITGGIFLVDKNPYNSSESRLVVDFSQFSRGHSRVHWPKFAVPNLQTLANLLS FT TNLQWLSLDVSAAFYHIPVSPAAVPHFLVGSPGLERFASCMSHDASNRNNSKLQTMHHI FT CSRHLYNTLLLLFKTYGRKLHLLAHPFIMGFRKLPMGVGLSPFLLAQFTSALTSMVRRN FT FPHCLAFAYMDDLVLGARSYEHLTAVYSHICSVFLDLGIHLNVEKTKWWGHTLHFMGYT FT INGAGVLPQDKHVHKVTTYLKSIPINQPLDYKICERLTGILNYVAPFTKCGYAALLPLY FT QAIASHTAFVFSSLYKNWLLSLYGELWPVARQRGVVCSVFADATPTGWGICTTCQLISG FT TFGFSLPIATAELIAACLARCWTGARLLGTDNSVVLSGKLTSFPWLLACVANWILRGTS FT FCYVPSADNPADLPSRGLLPALRPLPLLRFRPVTKRISLWAASPPVSTRRPVRVAWASP FT VQTCEPWIPP" FT CDS 1497..2345 FT /codon_start=1 FT /note="pre-surface antigen" FT /db_xref="GOA:P03144" FT /db_xref="InterPro:IPR000349" FT /db_xref="UniProtKB/Swiss-Prot:P03144" FT /protein_id="AAA46757.1" FT /translation="MKNQTGHLQGFAEGLRALTTSDHHNSAYGDPFTTLSPVVPTVSTT FT LSPPLTIGDPVLSTEMSPSGLLGLLAGLQVVYFLWTKILTIAQSLDWWWTSLSFPGGIP FT ECTGQNLQFQTCKHLPTSCPPTCNGFRWMYLRRFIIYLLVLLLFLTFLLVLLDWKGLLP FT VCPMMPATETTVNCRQCTISAQDTFTTPYCCCLKPTAGNCTCWPIPSSWALGSYLWEWA FT LARFSWLSLLVPLLQWLGGISLTVWLLLIWMIWFWGPVLMSILPPFIPIFALFFLIWAY FT I" FT sig_peptide 1497..1676 FT /note="surface antigen signal peptide" FT mat_peptide 1677..2342 FT /product="surface antigen" FT CDS 2884..3300 FT /codon_start=1 FT /note="B protein" FT /db_xref="GOA:P03168" FT /db_xref="InterPro:IPR000236" FT /db_xref="UniProtKB/Swiss-Prot:P03168" FT /protein_id="AAA46758.1" FT /translation="MAARLCCQLDSSRDVLLLRPLRGQPSGPSVSGTSAGSPSSAASAF FT SSGHQADIPVGRLPACFYSSAGPCCLGFTCADLRTMDSTVNFVPWHAKRQLGMMQKDFW FT TAYIRDQLLTLWEEGIIDPRLKLFVLGGCRHKYM" XX SQ Sequence 3311 BP; 878 A; 768 C; 670 G; 995 T; 0 other; atgtatcttt ttcacctgtg ccttgttttt gcctgtgttc catgtcctac tgttcaagcc 60 tccaagctgt gccttggatg gctttgggac atggacatag atccctataa agaatttggt 120 tcttcttatc agttgttgaa ttttcttcct ttggactttt ttcctgatct caatgcattg 180 gtggacactg ctgctgctct ttatgaagaa gaattaacag gtagggagca ttgttctcct 240 catcatactg ctattagaca ggccttagtg tgttgggaag aattaactag attaattaca 300 tggatgagtg aaaatacaac agaagaagtt agaagaatta ttgttgatca tgtcaataat 360 acttggggac ttaaagtaag acagacttta tggtttcatt tatcatgtct tacttttgga 420 caacacacag ttcaagaatt tttggttagt tttggagtat ggattagaac tccagctcct 480 tatagaccac ctaatgcacc cattttatca actcttccgg aacatacagt cattaggaga 540 agaggaggtt caagagctgc taggtccccc cgaagacgca ctccctctcc tcgcaggaga 600 aggtctcaat caccgcgtcg cagacgctct caatctccag cttccaactg ctgatttgga 660 gtggattcat aagacaaatg ttattacagg tttgtattct actcaaacag aaaaatttaa 720 ttgtaactgg aaacaacctg tatttcccaa aatccatctg gataataatt tattccaaaa 780 gttggagaat tattttggac ctttaactac taatgaaaaa aggagactaa aacttgtatt 840 tccagctaga ttcttcccaa atgctaccaa atattttcct ttacttaaag gaataaaaga 900 taaatatcct aattatacta tagaacactt ttttgctgca gcaaattatt tatggacatt 960 gtgggaatca ggaattctat atttaagaaa aaatcagaca actctcactt ttagaggtaa 1020 accatattct tgggaacaca gacagctaga gcaacataat gggcaacaac ataaaagtaa 1080 cattcgatcc caacaaatta gctgcatggt ggccaacagt gggaacttat tatacaccca 1140 ctaccaccgt gacaaatcca gcaatattca aaccaggaat ttatcagaca acgtctttaa 1200 aaaatccaaa gaatcaacaa gagttagatg ctatacttat gacaagatac aaagaaatag 1260 attgggacaa ttggcaagga ttccctgtga atcaaaggct cccagtgagc aacaacaatc 1320 ctccctcagg tcaaagggca gagactttcg aaatcaaatc caggcctata atagttccag 1380 gaataaggga tataccacgt ggcatagtac cacctcagac tccatccaat cgggatcaaa 1440 gaagaaaacc cacacctcta actcctcctt tgagagacac acaccctcat ttgacaatga 1500 aaaatcagac aggtcacctg cagggatttg cagagggact gagagctcta accacctcag 1560 atcatcacaa ctctgcctat ggagatcctt ttactacact aagccctgtg gtacctactg 1620 tctccaccac attgtctcct ccattgacga ttggggaccc tgtactttcg acggagatgt 1680 caccatcagg tctcctagga ctcctcgcag gattacaggt ggtatatttc ttgtggacaa 1740 aaatccttac aatagctcag agtctagact ggtggtggac ttctctcagt tttccagggg 1800 gcattcccga gtgcactggc caaaatttgc agttccaaac ctgcaaacac ttgccaacct 1860 cttgtccacc aacctgcaat ggctttcgct ggatgtatct gcggcgtttt atcatatacc 1920 tgttagtcct gctgctgttc ctcactttct tgttggttct cctggattgg aaaggtttgc 1980 ttcctgtatg tcccatgatg ccagcaacag aaacaacagt aaattgcaga caatgcacca 2040 tatctgctca agacaccttt acaacacctt actgctgttg tttaaaacct acggcaggaa 2100 attgcacttg ttggcccatc ccttcatcat gggctttagg aagctaccta tgggagtggg 2160 ccttagcccg tttctcttgg ctcagtttac tagtgccctt acttcaatgg ttaggaggaa 2220 tttccctcac tgtttggctt ttgcttatat ggatgatttg gttttggggg cccgttctta 2280 tgagcatctt accgccgttt attcccatat ttgctctgtt tttcttgatt tgggcataca 2340 tctaaatgtg gaaaaaacta aatggtgggg tcacacttta cacttcatgg gctataccat 2400 taatggtgca ggagtgttac ctcaagataa acatgtacat aaagtaacaa catacttaaa 2460 atctattcct attaatcaac ccttagatta taaaatatgt gaaaggttga cgggcattct 2520 taattatgtt gctcctttta ccaaatgtgg ttatgctgct ttactgcctt tatatcaagc 2580 tattgcttct catactgctt ttgttttctc ctccttatat aaaaactggt tactgtcact 2640 ttatggtgag ttgtggcccg ttgccagaca acgtggtgtg gtgtgctctg tgtttgctga 2700 cgcaactccc actggttggg gcatttgcac cacctgtcaa ctcatttccg gtactttcgg 2760 tttctcactt ccgattgcta ccgcggagct tatagccgcc tgccttgctc gctgctggac 2820 aggagctcgg ttgttgggca ctgataactc cgtggtcctc tccggtaagc taacttcgtt 2880 tccatggctg ctcgcctgtg ttgccaactg gattcttcgc gggacgtcct tctgttacgt 2940 cccctccgcg gacaacccag cggaccttcc gtctcgggga cttctgccgg ctctccgtcc 3000 tctgccgctt ctgcgttttc gtccggtcac caagcggata tccctgtggg ccgcctcccc 3060 gcctgtttct actcgtcggc cggtccgtgt tgcttgggct tcacctgtgc agacttgcga 3120 accatggatt ccaccgtgaa ctttgtaccc tggcatgcta agcgacagct gggcatgatg 3180 caaaaggact tttggactgc ttatataaga gatcaattat taactttatg ggaggagggt 3240 atcatcgatc ctaggctgaa attatttgta ttaggaggct gtaggcataa atacatgtga 3300 atgctggaat c 3311 //