ID   JX993913; SV 1; linear; genomic RNA; STD; VRL; 2042 BP.
XX
AC   JX993913;
XX
DT   21-NOV-2012 (Rel. 114, Created)
DT   21-NOV-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Cucumber mosaic virus isolate SXCH movement protein and coat protein genes,
DE   complete cds.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2042
RA   Niu Y., Zhao H.;
RT   ;
RL   Submitted (21-OCT-2012) to the INSDC.
RL   College of Life Sciences, Shanxi Agricultural University, Mingxian Road,
RL   Taigu, Shanxi 030801, China
XX
DR   MD5; c4f9a49cb1c14894b01559bbdd8e4876.
DR   EuropePMC; PMC6026765; 29769332.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2042
FT                   /organism="Cucumber mosaic virus"
FT                   /host="Bupleurum sp. (Chinese thorowax root)"
FT                   /isolate="SXCH"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /isolation_source="roots"
FT                   /collection_date="01-May-2012"
FT                   /proviral
FT                   /db_xref="taxon:12305"
FT   CDS             122..961
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:G8XQK4"
FT                   /protein_id="AFX68431.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDELQKILFSPDAIKKMAAECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDAGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDKQCVTLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYVLTDSKINQNARSESEELNVESPPAAIGSSSASRFESFRPQVVNGL"
FT   CDS             1262..1918
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:K7XP59"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:K7XP59"
FT                   /protein_id="AFX68432.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSASSSADANFRVLSQQLSRLNKT
FT                   LAAGRPTLNHPTFVGSERCKPGYTFSSITLKPPKIDRGSYYGKRLLLPDSVTEFDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDIEHQRIPTSGVLPV"
XX
SQ   Sequence 2042 BP; 461 A; 490 C; 493 G; 598 T; 0 other;
     gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtgtcg cgtcgtgtcg agtcgtgttg        60
     tccgcacatc tgagtcgtgc tgtccgcaca ttttctttca gtgtgttaga atacccgagg       120
     catggctttc caaggtacca gcaggacttt aacccaacag tcctcagcgg ctacgtctga       180
     cgaacttcaa aagatattat ttagccctga tgccatcaag aaaatggctg ctgagtgtga       240
     cctaggccgg catcattgga tgcgcgctga taacgcaatt tcagtccggc ccctcgttcc       300
     cgaagtaacc cacggtcgta ttgcttcctt ctttaagtct ggatatgatg ctggtgaatt       360
     atgctctaaa ggatacatga gcgtccctca agtgttgtgt gctgttactc gaacagtttc       420
     cactgatgct gaagggtctt tgagaattta cctagctgat ttaggcgata aggagctatc       480
     tcccatagat aagcagtgcg tcacattaca taaccatgat cttcccgctt tagtgtcttt       540
     ccaaccgacg tatgattgtc ccatggagac agttgggaat cggaagcggt gttttgcagt       600
     cgtcatcgaa agacatggtt atattgggta taccggcacc acagctagcg tgtgtagtaa       660
     ttggcaagca cggttttctt ctaagaataa caactacact catatcgcag ctgggaagac       720
     tctagtactg ccattcaaca gattagctga gcaaacgaaa ccgtcagccg tcgctcgcct       780
     gttgaagtcg caattgaaca acatagaatc ttcgcaatac gtcttgacgg attcgaagat       840
     taatcaaaat gcgcgcagtg agtccgagga attaaatgtt gagagccctc ccgccgcaat       900
     cgggagttct tccgcgtccc gcttcgaatc cttcagaccg caggtggtta acggtcttta       960
     gcgctttcga tgcgtattag tatataagta tatgtgagtc tgtacataat actatatcta      1020
     tagtgtcctg tgtgggttga tacagtagac aactgtgacg cgatgtcgtg ttgagaaggg      1080
     aacacatctg gtttttgtaa gccacatcat tagttttgag gttcaattcc tcttgctccc      1140
     tgttgtgccc cttacttttt catggatgct tctcccgacg aaattgcgtt tcgtctactg      1200
     gatcttaaga gtctgtgtgt tgtgtttttc tcttttgtgt cgtagatatt tgagtcgagt      1260
     catggacaaa tctgaatcaa ccagtgctgg tcgtaaccgt cgacgtcgtc cgcgtcgtgg      1320
     ttcccgctcc gcttcctcct ccgcggatgc caactttaga gtcctgtcgc agcaactttc      1380
     gcgacttaat aagacgttgg cagctggtcg tcctaccctt aaccacccaa cctttgtggg      1440
     gagtgaacgt tgtaaacctg ggtacacgtt ctcatctatt accctgaagc caccgaaaat      1500
     agaccgcggg tcttattatg gtaaaaggtt gttactacct gattcagtca cggaattcga      1560
     taagaagctt gtttcgcgca ttcaaattcg agttaatcct ttgccgaaat ttgattctac      1620
     cgtgtgggtg acggtccgta aagttcctgc ctcctcggac ctgtccgttg ccgccatctc      1680
     tgctatgttt gcggacggag cctcaccggt actggtttat cagtatgctg catccggagt      1740
     ccaagccaac aataaattgt tgtatgatct ttcggcgatg cgcgctgata ttggcgacat      1800
     gcgaaagtac gccgttctcg tgtattcaaa agacgatgct ctcgagacgg atgagttagt      1860
     acttcatgtc gacattgagc accaacgcat tcccacgtct ggggtgctcc cagtttgaat      1920
     ccgtgtttcc cagaaccctc cctccagttt tctgaggcgg gagctgagtt ggcagttttg      1980
     ctacaaactg tctgaagtca ctaaacgctt tgcggtgaac gggttgtcca tccagcttac      2040
     gg                                                                     2042
//