ID JX993909; SV 1; linear; genomic RNA; STD; VRL; 3385 BP. XX AC JX993909; XX DT 21-NOV-2012 (Rel. 114, Created) DT 21-NOV-2012 (Rel. 114, Last updated, Version 1) XX DE Cucumber mosaic virus isolate Am segment RNA 1, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3385 RA Niu Y., Zhao H.; RT ; RL Submitted (20-OCT-2012) to the INSDC. RL College of Life Sciences, Shanxi Agricultural University, Mingxian Road, RL Taigu, Shanxi 030801, China XX DR MD5; 6919391755c81efacdcccddd065a3e3a. XX FH Key Location/Qualifiers FH FT source 1..3385 FT /organism="Cucumber mosaic virus" FT /segment="RNA 1" FT /host="Atractylodes macrocephala Koidz" FT /isolate="Am" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="01-Oct-2011" FT /proviral FT /db_xref="taxon:12305" FT CDS 96..3077 FT /codon_start=1 FT /product="1a protein" FT /db_xref="GOA:K7XC39" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:K7XC39" FT /protein_id="AFX68424.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFEGRQ FT PDFCTHPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDH FT GVIPELNCQWRKIRSAFSETEDVTPLAEKLNSTVFSRVRKFKTMVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYRGMTYGIERCVIHAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILTSTLRETEEIAMRCYNDKKAWMEQFKVTLGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASCISKWFAALTR FT PLRVLFSSVVHALFPTLRPREEKEFLIKLSTFVTFNVECSFDGGEEWDVISSAAYVATQ FT AVTDGKVLAAQKAEKLAEKLAQPVIEVSDRPEAPSPAPDDTADVCGREQEVSELDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNIHFSTGRWMRPVPEGIVYSVGYNERGLGPKSDGELYIVNSECVICNSES FT LSDVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAHDVRMALFKS FT SDSKEACTFVRTADSVVLNECPTVSRVLVDEVVLLHFGQLCAAMSKLKAVRAICFGDSE FT QIAFSSRDASYDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW FT VSQSKVERSVTSRAIASVTLVDLDPSRFYITMTHADKASLISRAKEMNLPKTFWDERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKKFSYCLVALTRHKVTFRYEYCGVLNGDLVAEC FT IARA" XX SQ Sequence 3385 BP; 847 A; 774 C; 820 G; 944 T; 0 other; gttttattca caagagcgta cggttcaatc cctgcctccc ctgtgaaact accctttgaa 60 aacctctctc tcttaacctt ttctctgaaa ttcctatggc aacgtcctcg ttcaacatca 120 atgaattggt agcctcccac ggcgataaag gactacttgc gaccgccctc gttgataaga 180 cagctcatga gcagctcgag gagcaattac agcatcaacg tagaggccgt aaggtctaca 240 tccgaaacgt tttgggtgta aaggattccg aggtcatccg gaatcggtat ggagggaagt 300 acgacctcca tcttacccag caggagtttg ctccccacgg cctagctggt gccctccgct 360 tgtgtgaaac tctcgattgt ctagactctt tcccttcatc aggtctgcgg caagacctcg 420 tcttagactt cggaggaagt tgggtcacac attacctccg cggacacaac gtacactgct 480 gttccccttg tctgggtatc cgcgataaaa tgcgccacgc ggaacgttta atgaacatgc 540 gcaagatcat cttgaacgat ccacaacagt tcgagggtcg acagccggac ttttgcactc 600 atccggctgc agattgcaaa gtacaagccc actttgctat atctattcat ggaggttacg 660 atatgggctt tagaggactg tgtgaagcga tgaatgctca cggaaccact atcttgaagg 720 gaacgatgat gttcgatggt gctatgatgt ttgacgacca cggtgtaata cctgaactta 780 attgtcagtg gagaaagatc aggagtgctt tctccgaaac tgaagacgtc acaccgctgg 840 ctgagaaact taattccaca gtattttccc gcgtgcgtaa attcaagact atggtggctt 900 ttgattttat caatgagtct actatgtctt atgttcatga ttgggagaat ataaaatctt 960 ttctcacaga tcagacttat tcataccgag ggatgaccta cggtatcgag cggtgcgtta 1020 ttcacgctgg cattatgacg tataagatca ttggtgtacc tgggatgtgc ccacccgaac 1080 tcattcgaca ttgcatttgg ttcccctcta ttaaggacta tgttggtcta aagattcccg 1140 cgtcgcagga cttggttgaa tggaaaacag tgcgtatttt aacgtcaaca ttacgtgaaa 1200 cggaagagat tgctatgagg tgctacaacg acaagaaagc gtggatggaa caattcaagg 1260 ttaccctagg tgttctatcc gcgaaatcat ctaccattgt tatcaacggt atgtccatgc 1320 aatctggcga acgcatcgat attaacgatt atcattatat tggcttcgct atccttcttc 1380 acacaaaaat gaagtatgaa caactgggaa aaatgtatga catgtggaat gcttcgtgta 1440 tctcgaagtg gtttgcagcg ttgactcgtc cgttgcgtgt acttttctcc agtgttgttc 1500 acgcgctgtt cccgactttg agaccccgcg aggaaaaaga attcctgatc aagctctcca 1560 cctttgttac ttttaatgta gagtgctcat ttgacggtgg agaggaatgg gacgtgatat 1620 catctgctgc atacgttgct acgcaggctg ttaccgatgg gaaagttttg gctgcgcaaa 1680 aagccgagaa gctcgctgag aagcttgcac aacccgtgat tgaggtatcg gacagacctg 1740 aggcgccatc tccagcgcct gatgatacgg ctgatgtttg tggaagagag caagaggttt 1800 cggaacttga ctctctatca gctcagacac gttcccccat cactagagtt gctgaaaggg 1860 ctactgctat gctagagtat gccgcttatg agaaacagtt acatgatacc acagtgtcta 1920 atttgaaacg tatttggaat atggcgggtg gtgatgacaa gagaaactcc ctcgagggca 1980 atttgaagtt tgtttttgac acgtatttta ctgttgatcc catggtgaac attcatttct 2040 ccacgggtcg gtggatgcgt cctgtgcccg agggaattgt ttactctgtt ggatataacg 2100 aacgcggttt gggtcctaag tctgatggag agctttacat tgtcaatagt gaatgtgtga 2160 tttgcaatag cgagtcttta tctgatgtca ctcgttcact acaagctcca accggaacta 2220 tcagtcaagt cgacggagtt gctggttgcg ggaaaaccac ggcaataaaa tccatttttg 2280 agccgtccac tgacatgatc gtgaccgcga acaaaaaatc cgcccatgac gttcgaatgg 2340 cactctttaa atcgtcggac tctaaagaag cctgcacctt cgttcgtact gccgattctg 2400 tcgtgcttaa tgaatgtccg accgttagta gggttttggt tgacgaggtt gtgctgcttc 2460 actttggtca attgtgtgct gccatgtcca agctgaaggc tgtgcgagct atatgttttg 2520 gggattcgga gcaaattgct ttttcttctc gcgatgcctc gtatgatatg cgtttctcga 2580 agattattcc tgatgaaact agtgatgcgg atactacatt ccgtagccca caagacgttg 2640 tgccgcttgt gcgtttaatg gctacgaagg ctcttccgaa aggaactcat tcgaagtaca 2700 cgaaatgggt ttctcaatct aaagtggaaa gatctgttac atctcgtgcc atcgctagtg 2760 tgacattggt tgacctggat ccttccaggt tttatattac gatgactcat gctgataagg 2820 cctcactgat ttcaagagca aaggagatga acttaccaaa gactttctgg gacgaaagga 2880 ttaaaaccgt gcatgagtct caaggcatct ctgaagacca cgttactttg gtaagattaa 2940 agagcacaaa atgtgacctg ttcaagaaat tctcatactg tcttgttgcc ttgactagac 3000 ataaggtcac attccgctac gagtactgcg gtgtattaaa cggcgattta gtcgccgaat 3060 gtatcgctcg tgcttagcgg cccccccctt ttcgggtggg acctccctcc agttttctga 3120 ggcgggatct gagttggcag ttctgctaca aactgtctga agtcactaaa cgctctgcgg 3180 tgaacgggtt gtccttccag cttacggcta aaatggtcag tcgtggagaa atccacgcca 3240 gcagacttac aagtctctga ggcgcctttg aaaccatctc caaggtttct tcggaaggac 3300 ttcggtccgt gtacttctag cacaaagtgc tagtttcagg gtacgggtgc cctcccactt 3360 tgtgggagcc tccaaaagga gacca 3385 //