ID JX987088; SV 1; circular; genomic DNA; STD; VRL; 2760 BP. XX AC JX987088; XX DT 02-DEC-2012 (Rel. 115, Created) DT 02-DEC-2012 (Rel. 115, Last updated, Version 1) XX DE Tomato leaf curl Karnataka virus isolate Lucknow segment DNA-A, complete DE sequence. XX KW . XX OS Tomato leaf curl Karnataka virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2760 RA Raj S.K., Srivastava A., Snehi S.K.; RT "Molecular identification of Tomato leaf curl Karnataka virus associated RT with leaf curl and enation disease of Zinnia elegans from India"; RL Unpublished. XX RN [2] RP 1-2760 RA Raj S.K., Srivastava A., Snehi S.K.; RT ; RL Submitted (20-OCT-2012) to the INSDC. RL Plant Molecular Virology, CSIR-National Botanical Research Institute, RL Lucknow-226001, Rana Pratap Marg, Lucknow, U. P. 226001, India XX DR MD5; 8c993aebb20cf67df73e9fb35659b97c. XX FH Key Location/Qualifiers FH FT source 1..2760 FT /organism="Tomato leaf curl Karnataka virus" FT /segment="DNA-A" FT /host="Zinnia elegans" FT /isolate="Lucknow" FT /mol_type="genomic DNA" FT /country="India:Lucknow" FT /collected_by="Dr. S. K. Raj" FT /collection_date="Sep-2012" FT /db_xref="taxon:220932" FT gene 144..500 FT /gene="AV2" FT CDS 144..500 FT /codon_start=1 FT /gene="AV2" FT /product="Pre-coat protein" FT /db_xref="GOA:K7YBK2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:K7YBK2" FT /protein_id="AFX95948.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSADTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHSRFEGTSPSQLRQPICEPCCCPHVPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCP" FT gene 304..1074 FT /gene="AV1" FT CDS 304..1074 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:K7ZA05" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:K7ZA05" FT /protein_id="AFX95949.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPMSRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1071..1475) FT /gene="AC3" FT CDS complement(1071..1475) FT /codon_start=1 FT /gene="AC3" FT /product="Replication enhancer protein" FT /db_xref="GOA:K7YHD8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K7YHD8" FT /protein_id="AFX95950.1" FT /translation="MDSRTGELITAAQAEIGVFIWEIQNPLYFKITEHHNRPFLMNQDI FT ITVQVQFNHNLRKVLGIHKCFLVIRIWMTSQLPTGCLLRVCKRQVLNPLNNLGVISINN FT VIRAVDHVLWNVLHHVVYVDQTYSIKFNIY" FT gene complement(1216..1620) FT /gene="AC2" FT CDS complement(1216..1620) FT /codon_start=1 FT /gene="AC2" FT /product="Transcriptional activator protein" FT /db_xref="GOA:K7YYK7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7YYK7" FT /protein_id="AFX95951.1" FT /translation="MRSSSPSKDHSTPVPIKMEHRLAKKGNRRRRVDLPCGCSYFIALA FT CHDHGFTHRGTHHCSSSRDWRVYLGDSKSPIFQDNRASQPAIPDEPRHHHRPSTVQSQP FT EESVGDTQMFPSNPNMDDLTASDWLFIKGM" FT gene complement(1523..2608) FT /gene="AC1" FT CDS complement(1523..2608) FT /codon_start=1 FT /gene="AC1" FT /product="Replication-associated protein" FT /db_xref="GOA:K7YJA2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K7YJA2" FT /protein_id="AFX95952.1" FT /translation="MAAPNRLKINAKNYFLTYPQCSLTKEEAISQFLNLQTPTSKKFIR FT MGGELHEDGPPHLHVLIQFEGKFQCKNNKIFDLTSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKIEALNILREKAPKDYVLQFH FT NLNSNLDRIFTPPVEVYVFPFSSSSFDQVPEDIEEWAADNVSSAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLNLSQKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNIKYGKPVQIKGGIPTIFLCNPGPKSSYKEFLDEEENSGLKNWTVKNAIFVTLERPL FT YSCSNQNGAQASQEGEQASSC" FT gene complement(2158..2451) FT /gene="AC4" FT CDS complement(2158..2451) FT /codon_start=1 FT /gene="AC4" FT /product="C4 Protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K7YBK7" FT /protein_id="AFX95953.1" FT /translation="MGLLTCMFSSSSKENSSARTIKSSTLPPQPGQHISIRTFRELKAQ FT AMSKPTWRKTETSLIMEFSKSMEDQLEEVANLPTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2760 BP; 747 A; 551 C; 624 G; 838 T; 0 other; accggatggc cgcgaatttt tttgtgggcc ccgcaacgca ctaactgaca aggacatgct 60 aaccaatcac atgaagcgct caaagcttaa ttgttttgtg gtcccctatt taaacttcgg 120 caccaagttt tgtattttgc actatgtggg atccattgtt aaacgagttt cctgaaaccg 180 ttcacggttt tagatgtatg ttagcagtta aatatctgca gttagtagaa aagacctatt 240 ctgccgacac attaggttac gatttaatta gggatttaat ttcagttatt agggctagaa 300 attatgtcga agcgaccagc agatataatc atttccactc ccgcttcgaa ggtacgtcgc 360 cgtctcaact tcgacagccc atatgtgagc cgtgctgctg cccccatgtc ccgcgtcacc 420 aaagcaaaag catgggcgaa caggcccatg aacagaaagc ccaggatgta caggatgtac 480 agaagtccag atgtccctag aggatgtgaa ggcccatgta aggtccagtc gtttgagtcc 540 agacacgatg tagtccatat aggcaaggtc atgtgtatta gtgatgtcac tcgtggaacc 600 gggctgaccc atcgagtggg taaaaggttt tgtgttaagt ctgtttacgt tttggggaag 660 atatggatgg atgagaacat caagaccaag aaccacacga acagtgtcat gttttttctt 720 gttcgtgacc gtcgtcctgt tgacaagcca caagactttg gagaggtgtt caatatgttt 780 gacaacgagc ctagcactgc cactgttaag aatatgcaca gagatcgtta tcaggtgttg 840 aggaagtggc atgcaactgt caccggtgga cagtacgctt caaaggaaca ggcattagtg 900 aagaagtttg ttagggttaa taattatgtt gtttataacc agcaagaggc tgggaaatat 960 gagaatcatt ctgagaatgc attgatgttg tatatggcgt gtactcacgc ctctaaccct 1020 gtgtatgcta ctttgaagat acggatctat ttctatgatt cagtatcgaa ttaataaata 1080 ttgaatttta ttgaatatgt ttggtctaca tatacaacgt ggtgtaatac attccataat 1140 acatgatcaa cggctctaat tacattgtta atactgataa ctcctaaatt atttaggggg 1200 ttaagcactt gcctcttaca tacccttaat aaacaaccag tcggaagctg tgaggtcatc 1260 catattcgga ttactaggaa acatttgtgt atccccaaca ctttcctcag gttgtgattg 1320 aactgtactt ggacggtgat gatgtcttgg ttcatcagga atggccggtt gtgatgctct 1380 gttatcttga aatatagggg attttgaatc tcccagataa acacgccaat ctctgcttga 1440 gctgcagtga tgagttcccc tgtgcgtgaa tccatggtcg tggcaggcta atgctatgaa 1500 gtaagaacag ccgcacggta gatcaacacg acgacgcctg ttccccttct tggctagcct 1560 gtgctccatt ttgattggaa caggagtaga gtggtctttc gagggtgacg aagatcgcat 1620 tctttacagt ccaattttta agtccactat tttcttcttc atccaagaat tctttatagc 1680 tagatttggg tcctggattg cagaggaaga tagtgggaat tccgccttta atttgaactg 1740 gctttccgta ctttatattg ctttgccagt ctctttgggc ccccatgaat tccttaaagt 1800 gctttagata atgcggatca acgtcatcaa tgacgttata ccaggcatca ttactgtaga 1860 ccttttggct aaggtttaga tgaccacata gataattatg tggtccaagt gatctggccc 1920 acatcgtctt cccagttcta ctgtcaccct caatcactat acttatgggc cttaaaggcc 1980 gcgcagcggc actggaaaca ttatcggcag cccattcttc aatgtcttca ggaacttggt 2040 caaaagaaga agaagaaaaa ggaaaaacat aaacctccac aggaggtgta aaaatcctat 2100 ctaaattaga atttaaattg tgaaattgta aaacataatc tttgggagcc ttctccctta 2160 atatattgag ggcctcaatt ttggaccctg cgttgattgc ctcggcatat gcgtcgttgg 2220 cagattggca acctcctcta gctgatcttc catcgacttg gaaaactcca tgatcaagga 2280 tgtctccgtc tttctccatg taggttttga catcgcttga gcttttagct ccctgaatgt 2340 tcggatggaa atgtgctgac ctggttgggg aggtaaggtc gaagatttta ttgttcttgc 2400 actggaattt tccttcgaac tggatgagaa catgcaagtg aggaggccca tcttcgtgaa 2460 gctctccgcc cattctaatg aattttttag aagttggtgt ttggagattt aagaattggg 2520 aaattgcttc ttctttagtg agggagcact ggggataagt gagaaaataa ttttttgcat 2580 ttatttttaa ccgatttggg gccgccatgt tgacttagtc aatcggtgtc tctcaatttg 2640 ttctatgtat cggtgtattg gagtcctata tatagggaga ctctaatggc ataactgtaa 2700 taaaagaact ttaatttgaa attcaaaatc tcacgctaaa gcggccatcc gtataatatt 2760 //