ID JX971982; SV 1; linear; genomic RNA; STD; VRL; 2444 BP. XX AC JX971982; XX DT 22-APR-2013 (Rel. 116, Created) DT 01-SEP-2013 (Rel. 118, Last updated, Version 2) XX DE Crimson clover cryptic virus 2 isolate IPP_IncarnatSK segment RNA 1, DE complete sequence. XX KW . XX OS Crimson clover cryptic virus 2 OC Viruses; Riboviria; Partitiviridae; Betapartitivirus. XX RN [1] RP 1-2444 RX DOI; 10.1007/s00705-013-1691-x. RX PUBMED; 23584419. RA Lesker T., Rabenstein F., Maiss E.; RT "Molecular characterization of five betacryptoviruses infecting four clover RT species and dill"; RL Arch. Virol. 158(9):1943-1952(2013). XX RN [2] RP 1-2444 RA Lesker T., Maiss E.; RT ; RL Submitted (15-OCT-2012) to the INSDC. RL Institute of Plant Diseases and Plant Protection, Gottfried Wilhelm Leibniz RL University Hannover, Herrenhaeuser Str. 2, Hannover 30149, Germany XX DR MD5; 1a0a10ffe5ab0c6139d8be4dcf1bb7d0. XX CC GenBank Accession Numbers JX971982-JX971983 represent the complete CC genome of Crimson clover cryptic virus 2 isolate IPP_IncarnatSK. CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2444 FT /organism="Crimson clover cryptic virus 2" FT /segment="RNA 1" FT /host="Trifolium incarnatum" FT /isolate="IPP_IncarnatSK" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="2011" FT /db_xref="taxon:1323528" FT CDS 109..2349 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="87.2 kDa" FT /db_xref="GOA:M9VTV7" FT /db_xref="InterPro:IPR001205" FT /db_xref="UniProtKB/TrEMBL:M9VTV7" FT /protein_id="AGJ83769.1" FT /translation="MPFNAVRNYLNERMTRLKQEWKTYQSTDHDPIKILDTIQDPDYRR FT YLDNARFNSDNEMKHLMLNKEYSTLVEAYRTDNAKKHQVYELHQPIPNDAAPVIQSRLP FT AKGIKLVPLMYHYGHVTHDPVSLTDANRSDDFETQVVPDSDAPTRFGYPIDVRIYNLIC FT YRYSKYLEVINAYCRPIGTVNATFEDFNKEQIPSAPIDPKRKENVLSHIHKFLDTKPYL FT PLHFVDTQFCKTPLVTGTGYHNRYSFKQKAHAKYSHPAEYATKPISKGYFYNATYENAR FT TIIHFIKEYGLPFNVIRADDKSELTDSDVQKYINEANSFFNDYPTLLFTRNHISKRDGP FT LKVRPVYAVDDIFIIMELMLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTF FT FSLDWSSYDQRLPRVITDIYYTDFLRSLLVINNGYQPTYEYPTYPDLDEHKLYHRMDNL FT LHFLHLWYNNMTFLLPDGYAYRRTSCGVPSGLYNTQYLDSFGNLFLIIDAMLEFGFTDS FT EIQKFILLVLGDDNTGMTTIPICRMFNFITFLEKYALERYNMVLSTTKSVLTTFRSKIE FT SLGYQCNHGSPKRDIDKLVAQLCYPENGLKPHTMAARAIGIAYASAGQDDMFHSFCQDV FT YNIFRSDYRPDDRMNLHFKRQIFHNLEDGMPDLAPPIVPPFPSLYEIREMYAYYKGPLD FT FAPKWNYAHFMSDPDTTPPYSKTMRDYEAENNISSRVAPTFETVVPSTINLP" XX SQ Sequence 2444 BP; 725 A; 595 C; 382 G; 742 T; 0 other; agatttattt aaagccgccc cgtgctctga atattaagaa ttcacattcg tctaacctct 60 aaatctgaaa attactctca actaattttc acattctaac gtctcacaat gccgttcaac 120 gcagttcgca attacctcaa tgagcgaatg actcgcttga aacaagaatg gaagacttac 180 cagtctaccg accatgaccc aatcaagata cttgatacaa ttcaagatcc tgactatcgc 240 cgctacctag ataatgctcg ctttaatagc gataatgaaa tgaaacacct tatgctaaat 300 aaggaatatt caactctagt tgaagcttac cgcactgaca atgccaagaa acaccaagtt 360 tatgaactac accagccaat ccccaatgat gctgcacctg ttattcaatc ccgcttgcct 420 gctaaaggta taaagttagt cccactcatg taccattatg gacatgttac tcatgaccct 480 gtttctctca ccgatgcaaa tcgttctgat gatttcgaaa ctcaagttgt tccagactcc 540 gatgctccta ctcgctttgg atatcctata gatgttcgca tctataatct tatctgttat 600 agatactcca agtatctaga agtgattaat gcatactgtc gccctattgg aacagttaac 660 gctacctttg aagattttaa caaagaacag atcccatctg ctcctattga tcctaaaaga 720 aaggaaaatg tgctctccca catacacaag ttccttgata ccaagcctta tctgccactc 780 catttcgtag acactcagtt ctgcaagact cctcttgtta ctggaaccgg ctaccacaat 840 cgttactctt ttaagcaaaa ggctcatgct aaatactctc atcccgctga gtatgctacc 900 aagcctattt ctaaaggcta tttttataat gccacttatg agaacgctcg taccatcatt 960 cattttatta aagaatatgg attacctttt aacgtaatca gagctgacga taaatctgaa 1020 ctcactgata gtgatgtcca gaaatatatt aatgaagcaa acagcttctt taatgactat 1080 ccgacgttac tgttcactcg caaccacatt tcaaagagag atggaccttt aaaagtccgc 1140 cccgtttatg ctgttgatga tatctttatc atcatggaat taatgttgac atttcctttg 1200 actatacagg ctcgaaagcc ttcctgttgc attatgtatg gactagaaac cattcgtggt 1260 tctaaccgtt acattgaaca aatagctcgt gactattcga ccttcttttc tttagattgg 1320 tccagttatg accagcgctt accccgtgtt ataactgata tttattacac tgatttcctt 1380 cgaagtctac ttgtaatcaa taatggatac cagccgacct atgaataccc cacctacccc 1440 gaccttgatg aacacaagct ctaccataga atggataacc tcctccattt tctacattta 1500 tggtacaata acatgacctt cctccttcct gatggttatg cttaccgccg aacctcctgc 1560 ggtgtacctt ctggcttgta caacactcaa taccttgact catttggcaa tctatttttg 1620 attatagacg ccatgcttga atttggtttt accgattctg agattcaaaa gtttatcctc 1680 cttgttttag gagatgataa tactggtatg acgacaatcc ccatttgtcg aatgtttaac 1740 ttcatcacct ttcttgaaaa atatgcactc gaacgctaca atatggtcct ttcaacgacc 1800 aaatccgttc ttacaacttt ccgttctaaa atcgagtccc ttggatacca atgtaaccat 1860 ggctcgccga aacgtgatat tgacaagctt gttgcccaac tctgttatcc agagaatggt 1920 ttaaagccac acactatggc tgccagagca ataggcatcg catacgcctc cgccggccaa 1980 gatgatatgt ttcactcctt ttgccaggat gtatataaca tatttaggtc tgattatcgc 2040 cctgatgacc gcatgaatct acatttcaaa agacagattt ttcacaatct tgaagatgga 2100 atgcctgacc ttgcgccacc aattgtgcct ccttttcctt cactctatga aattcgagag 2160 atgtacgcct actacaaagg ccctcttgac tttgctccta aatggaacta tgcccatttc 2220 atgtctgatc cggataccac cccaccttac tcgaaaacta tgcgtgacta cgaagctgaa 2280 aataatattt caagccgtgt cgctcctact tttgaaacgg tcgtgcccag cacaataaat 2340 ttgccgtgat gattttgtgc ttgtaatata gcataaagta ctttacttgc taatttttaa 2400 attaaaaaaa aaaaaaaaaa cactaaaaaa tcaaaaaaat accc 2444 //