ID JX971978; SV 1; linear; genomic RNA; STD; VRL; 2430 BP. XX AC JX971978; XX DT 22-APR-2013 (Rel. 116, Created) DT 01-SEP-2013 (Rel. 118, Last updated, Version 2) XX DE Red clover cryptic virus 2 isolate IPP_Nemaro segment RNA 1, complete DE sequence. XX KW . XX OS Red clover cryptic virus 2 OC Viruses; Riboviria; Partitiviridae; Betapartitivirus. XX RN [1] RP 1-2430 RX DOI; 10.1007/s00705-013-1691-x. RX PUBMED; 23584419. RA Lesker T., Rabenstein F., Maiss E.; RT "Molecular characterization of five betacryptoviruses infecting four clover RT species and dill"; RL Arch. Virol. 158(9):1943-1952(2013). XX RN [2] RP 1-2430 RA Lesker T., Maiss E.; RT ; RL Submitted (15-OCT-2012) to the INSDC. RL Institute of Plant Diseases and Plant Protection, Gottfried Wilhelm Leibniz RL University Hannover, Herrenhaeuser Str. 2, Hannover 30149, Germany XX DR MD5; dbcfa00e269db72371d6dbd261896a77. XX CC GenBank Accession Numbers JX971978-JX971979 represent the complete CC genome of Red clover cryptic virus 2 isolate IPP_Nemaro. CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2430 FT /organism="Red clover cryptic virus 2" FT /segment="RNA 1" FT /host="Trifolium pratense cv. Nemaro" FT /isolate="IPP_Nemaro" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="2011" FT /db_xref="taxon:1323524" FT CDS 107..2344 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="86.7 kDa" FT /db_xref="GOA:M9VR11" FT /db_xref="UniProtKB/TrEMBL:M9VR11" FT /protein_id="AGJ83765.1" FT /translation="MPFNSARNYLAERMIRTKQELMTYQSEDHNPDAILEKSQDPDYRR FT YYDNTRFDPSNEVKHRILNKEYSTLVEAYRIKNDRKHQPYELHQPIPEDAAPIPESRVP FT APGLKLVPLMYHYGHIVHDPVASESDSDDDNTASERPSKTSIPHFGYPVNKRIYDVIVN FT VYPEYLKVIGEYCRPIGTVEATFADFNKEQIPSAPINIERKEQVLTHIFKFLDAQPYLP FT LHFVDTQFCKTPLVTGTGYHNRYSFKQKAHAKYSRPEEYAKLPTSKGYFYNATYENART FT LVHFIKQFGLPFNLQYAPEDADPTDEQVQSYIDTANSFFNDYPTLLFTRNHISKRDGTL FT KVRPVYAVDDLFIIIELMLTFPLTVQARKQSCCIMYGLETIRGSNHYIERLARSYSTYF FT SLDWSSYDQRLPRVITDIYYTDFLRRLIVINHGYQPTYEYPTYPDLDEHKLYSRMNNLL FT YFLHTWYNNMTFVLSDGYAYRRTHCGVPSGLYNTQYLDSFGNLFLIIDAMLEFGFSESE FT IDNFILLVLGDDNTGMTVISIDRIYDFINFLEKYALIRYNMVLSPTKSVLTTLRSKIET FT LGYQCNHGSPKRDISKLVAQLCYPENGLKPHTMAARAIGIAYAAAGQDPMFHSFCHDVY FT NLFRLDYKPDARTNLNFQRQIYHNLEDGIPDLATPVVPPFPSLYEVRHMYSKYQGPLSY FT APKWNYAHFINDPDVTPPSPKTMRDYEIENDLISRTAPTFETVVPATRNFP" XX SQ Sequence 2430 BP; 705 A; 598 C; 379 G; 748 T; 0 other; agatttattt aaagcggccc ccgccctaat atttagaatt cacattcgtc tactaatttt 60 cctacaaaat aactgctcac ccttttattt ttactaacgt ctaaccatgc cgttcaactc 120 tgctcgcaat tatcttgcgg aacgtatgat tcgcaccaaa caagaactta tgacttacca 180 gtcagaagat cacaatcccg atgctattct tgagaaatct caagatccag attatcgtcg 240 ctactacgac aatactcgtt tcgacccctc taatgaggtc aaacatcgca tccttaataa 300 ggaatactcc acactagtag aagcttatcg tattaaaaac gatagaaaac accagcctta 360 tgaattacat cagcctatcc ctgaagatgc tgccccaatt cctgaatctc gtgtcccagc 420 tcctggtctg aaacttgttc ctttaatgta ccactatggt catattgtcc atgaccctgt 480 tgcttccgaa tcagattccg atgatgataa tactgcctcc gaaaggccaa gtaagacatc 540 gatccctcat tttggatatc ccgttaataa gcgcatctat gatgtaattg ttaatgtata 600 ccctgaatat ttaaaagtga ttggtgaata ctgccgccca attggaactg ttgaggctac 660 ttttgctgac tttaacaagg aacagattcc ctctgcccct attaatattg aaaggaaaga 720 acaagtgtta acccacattt ttaaattcct agatgctcag ccatacctcc cgctccattt 780 tgttgatacc cagttttgca agacccctct tgttactgga accggctatc ataatcgcta 840 ttcttttaaa cagaaagcgc atgcgaaata ttctcgcccc gaagagtatg ctaaactacc 900 aacctctaaa ggttattttt acaatgctac ttatgagaat gctcgtaccc tggtccattt 960 cataaaacag tttggattac cattcaatct gcaatatgct cctgaagatg ctgaccctac 1020 cgatgaacag gttcaatcct acatcgacac tgctaatagc ttctttaatg actatccgac 1080 gttattgttc actcgcaacc acatttctaa acgtgatgga actcttaaag tccgccccgt 1140 ttatgctgtt gatgatttat ttatcatcat tgaacttatg ctgacatttc cattgactgt 1200 acaagctcgc aaacagtcct gttgcattat gtatggttta gaaaccattc gtggttcaaa 1260 ccattacatt gaacgcttag ctcgttcgta ttcgacctac ttctccctag attggtccag 1320 ttatgaccaa cgcttacccc gcgtcattac tgatatttat tacactgact tcctccgaag 1380 attaattgta attaaccatg gataccaacc gacctatgaa taccccacct accctgacct 1440 tgatgaacac aaactgtact ctagaatgaa taatctttta tactttcttc atacatggta 1500 caataacatg actttcgttt tatctgatgg ttatgcctac cgccgaaccc attgcggtgt 1560 accctctggt ctgtacaata ctcaatacct tgattctttt ggtaatctat ttttaataat 1620 agatgccatg cttgaattcg gtttcagtga atctgaaatc gacaatttta tcctccttgt 1680 attaggagat gataatactg gtatgacggt catatcaatt gaccgaatct atgatttcat 1740 caattttctt gaaaaatacg ctttaatacg ttacaacatg gtcctatccc cgaccaaatc 1800 tgttttaact acattgcgct ctaagatcga gaccctcggt taccaatgta accatggatc 1860 ccctaagcgc gatatttcca agctcgttgc ccaactctgt tatccagaga atggccttaa 1920 gccacatact atggctgcta gagcaatcgg aattgcgtac gccgctgctg gccaagatcc 1980 aatgtttcac tcattttgcc atgatgtgta taacttgttt aggttagatt ataaacctga 2040 tgctcgcact aacttgaatt tccaacgcca aatttatcac aatcttgaag atggaattcc 2100 tgatcttgca acaccagttg tgccaccatt cccttcatta tatgaagtac gccatatgta 2160 ctccaagtac caaggcccac tgtcgtatgc tccaaaatgg aactacgctc acttcatcaa 2220 tgacccggat gttacgccac cctctcccaa aactatgcgt gactacgaaa ttgagaacga 2280 tctcatatct cgtactgcac ctacttttga aacggttgtg cccgccacaa gaaatttccc 2340 gtgattattt tgtgctttac aagcatagaa atttttctcg ctaatttaaa ttaaaataaa 2400 acacaaaaaa aaaatcaaaa taaatccccc 2430 //