ID JX971976; SV 1; linear; genomic RNA; STD; VRL; 2435 BP. XX AC JX971976; XX DT 22-APR-2013 (Rel. 116, Created) DT 01-SEP-2013 (Rel. 118, Last updated, Version 2) XX DE White clover cryptic virus 2 isolate IPP_Lirepa segment RNA 1, complete DE sequence. XX KW . XX OS White clover cryptic virus 2 OC Viruses; Riboviria; Partitiviridae; Betapartitivirus. XX RN [1] RP 1-2435 RX DOI; 10.1007/s00705-013-1691-x. RX PUBMED; 23584419. RA Lesker T., Rabenstein F., Maiss E.; RT "Molecular characterization of five betacryptoviruses infecting four clover RT species and dill"; RL Arch. Virol. 158(9):1943-1952(2013). XX RN [2] RP 1-2435 RA Lesker T., Maiss E.; RT ; RL Submitted (15-OCT-2012) to the INSDC. RL Institute of Plant Diseases and Plant Protection, Gottfried Wilhelm Leibniz RL University Hannover, Herrenhaeuser Str. 2, Hannover 30149, Germany XX DR MD5; 7e427cd702b8deaf1e3e2bcea17ca872. XX CC GenBank Accession Numbers JX971976-JX971977 represent the complete CC genome of White clover cryptic virus 2 isolate IPP_Lirepa. CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2435 FT /organism="White clover cryptic virus 2" FT /segment="RNA 1" FT /host="Trifolium repens cv. Lirepa" FT /isolate="IPP_Lirepa" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="2011" FT /db_xref="taxon:1323525" FT CDS 109..2349 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="87.1 kDa" FT /db_xref="GOA:M9VUA5" FT /db_xref="UniProtKB/TrEMBL:M9VUA5" FT /protein_id="AGJ83763.1" FT /translation="MPHNSTRNYLAERMIRTKRELMTYQSKDRDPDAILEASQDQDYRR FT HYDNARYDPSNEVKYRILNKEYSTLVEAYRLRNDRKHQPYELHQPIPEDAAPIPKSRVP FT APGLKLVPLMYHYGHVVHEPAHSDESDSDDNSDAPTRPVKESVPHFGYPVSKKIFDLIV FT RVYPEYIKVINTYCRPLGTVEATFADFNKEQIPSAPINSKRRETVLKHIFKFLDTQPYL FT PLHFVDTQYCKTPLVTGTGYHNRYSFKQKAHAKYSHPEEYAKMHTSKGYFYNATYENAR FT TLVHFIKQFGLPFNLQYAPEDADLTDDQVQSYIDAANNFFNDYPTLLFTRNHISKRDGT FT LKVRPVYAVDDIFIIIELMLTFPLTVQARKQSCCIMYGLETIRGSNHYIERLARSYSTF FT FSLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKMYSRIDNL FT LYFLHTWYNNMTFVLSDGYAYRRTHCGVPSGLYNTQYLDSFGNLFLIIDAMLEFGFSDA FT EIDDFILLVLGDDNTGMTVIPIDRIYDFINFLEKYALVRYNMVLSPTKSVLTTLRSKIE FT TLGYECNHGSPKRDISKLIAQLCYPENGLKPHTMAARAIGIAYAAAGQDFMFHSFCHDV FT YNIYRLDYKPDARTNLNFQRQIYHNLEDGIPDLATSVVPPFPSLYEVRHMYSQYQGPLT FT YAPKWNYAHFINDPDDVPPNPKTMREYEIENDLISRTAPTFETVVPATRNFP" XX SQ Sequence 2435 BP; 707 A; 597 C; 385 G; 746 T; 0 other; agatttattt aagacggccc cccccgttct aatatttaga attcacattc gtctatccat 60 ccctttaaaa taacagctca ccctcttatt ttctactaac gtccaaccat gcctcacaac 120 tccactcgca attatcttgc ggaacgtatg attcgtacta aaagagaatt aatgacttac 180 cagtcaaaag accgtgatcc cgatgcaatc cttgaagcct ctcaagatca agactaccgt 240 cgtcattatg acaacgcccg ctatgatccc tcaaatgagg tgaaataccg catccttaat 300 aaggaatact caacactagt tgaagcctat cgtttaagaa atgatagaaa acatcagcct 360 tatgaattac atcagcccat ccctgaagat gccgctccaa ttcctaaatc tcgtgttcct 420 gctcctggtt tgaaacttgt tcctctcatg taccattatg gtcatgttgt tcacgagcct 480 gctcactctg atgaatccga ttccgatgat aactccgatg ctccgactag gccagttaaa 540 gagtcagtcc ctcatttcgg ctaccctgtt agcaaaaaga tttttgatct tattgttaga 600 gtttatcctg aatacattaa ggtgattaac acttactgtc gccctcttgg aactgttgaa 660 gctacctttg ctgattttaa taaagaacag attccttctg ctcctattaa ttctaagaga 720 agagaaactg tgctcaagca catattcaaa ttccttgata ctcagcctta tctcccgctt 780 cacttcgttg atacacagta ttgcaaaact ccccttgtta ctggaactgg ttaccacaat 840 cgctattctt tcaaacagaa agcacatgcg aaatattctc atcctgaaga atatgcaaag 900 atgcatactt cgaaaggcta tttttacaac gccacttatg agaacgctcg cactctagtc 960 cactttatta agcagtttgg attaccattc aatctgcaat atgcccctga agacgctgac 1020 ctcactgatg atcaggttca atcctacatt gatgctgcca acaacttctt caacgactat 1080 ccgacgttat tgttcactcg caaccacatt tcaaaacgag acggtacctt aaaagttcgt 1140 cctgtttatg ctgtagatga tatttttatc atcatcgaac ttatgttgac atttccgttg 1200 actgttcaag ctcgaaagca atcgtgttgc attatgtatg gtctcgaaac cattcgtggt 1260 tccaaccatt acattgaacg cctagctcgc tcgtattcga ccttcttttc attagattgg 1320 tccagctatg atcagcgctt acctcgcgtc ataactgata tttattacac tgacttcctc 1380 cgaagcttaa ttgtaattaa ccatggatac caaccgacct atgaataccc tacttaccct 1440 gaccttgatg aacacaagat gtactctaga atagataatt tattatactt tcttcacaca 1500 tggtacaaca atatgacttt cgtcttatcc gatggttatg cttaccgccg aacccattgc 1560 ggtgtaccct ctggcttgta caacacacag taccttgatt cttttggtaa tctattttta 1620 ataattgatg ccatgcttga atttggtttc agcgatgctg aaatcgacga ttttatcctc 1680 ctagttttag gagatgataa tacaggtatg acggtcattc ccattgaccg gatttatgac 1740 ttcatcaact ttcttgaaaa gtacgcttta gtacgatata atatggtcct ttccccgacc 1800 aaatccgtgc taactacttt gcgctctaaa attgaaaccc ttggctacga atgtaaccat 1860 ggatcaccta agcgcgatat ttccaagctc attgcccaac tctgctatcc agagaatggt 1920 cttaagccac atactatggc tgcccgagca attggaatag cgtatgccgc tgctggccaa 1980 gattttatgt ttcactcatt ttgccatgat gtgtataaca tatataggtt agactacaaa 2040 cctgatgccc gcactaatct caacttccaa cgccagattt accataatct tgaagatgga 2100 attccagatc ttgcaacatc agttgtgcca ccattcccat cactatatga agtacgccat 2160 atgtactctc aataccaagg ccctttaacg tatgctccaa aatggaacta cgctcacttc 2220 attaatgatc cggatgatgt accacccaat cccaaaacta tgcgcgaata tgaaattgag 2280 aatgatctca tatctcgtac tgcacctact tttgaaacgg ttgtgcctgc cacaagaaat 2340 ttcccgtgat tattttgtgc tttataagca tagaaatttt tctcgctaat ttaaattaaa 2400 ataaaacaca aaaaaaaaaa tcaaaataaa tcccc 2435 //