ID JX966247; SV 1; linear; genomic RNA; STD; VRL; 4448 BP. XX AC JX966247; XX DT 16-DEC-2012 (Rel. 115, Created) DT 16-DEC-2012 (Rel. 115, Last updated, Version 1) XX DE Rice yellow mottle virus isolate Tz21, complete genome. XX KW . XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-4448 RX PUBMED; 23123216. RA Rakotomalala M., Pinel-Galzi A., Mpunami A., Randrianasolo A., RA Ramavovololona P., Rabenantoandro Y., Fargette D.; RT "Rice yellow mottle virus in Madagascar and in the Zanzibar Archipelago; RT Island systems and evolutionary time scale to study virus emergence"; RL Virus Res. 0:0(2012). XX RN [2] RP 1-4448 RA Rakotomalala M., Pinel-Galzi A., Mpunami A., Randrianasolo A., RA Ramavovololona P., Rabenantoandro Y., Fargette D.; RT ; RL Submitted (12-OCT-2012) to the INSDC. RL RPB, IRD, 911 av Agropolis BP 64501, Monptellier 34080, France XX DR MD5; 0cc1d95fb69d2a2aa125dd1242564160. DR EuropePMC; PMC3791421; 23830075. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4448 FT /organism="Rice yellow mottle virus" FT /host="Oryza sativa" FT /isolate="Tz21" FT /mol_type="genomic RNA" FT /country="Tanzania" FT /collection_date="2002" FT /db_xref="taxon:31744" FT gene 83..556 FT /gene="ORF1" FT CDS 83..556 FT /codon_start=1 FT /gene="ORF1" FT /product="putative movement and gene silencing protein" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:L0ANP6" FT /protein_id="AFZ75398.1" FT /translation="MTRLEVLIRPTEQTVAKAITVGYTHALTWVWHSQTWDVDSVNDPV FT LRADFDPDRTGWVAVSFACTQCTAHYYTCEQVKFFTNIPSVHYDVVCADCERRVLQDDE FT IDREHQERNAELSACNARALSEGRPASLVYLSRDACDISGHSGTCRYNRYLNF" FT gene 610..3605 FT /gene="ORF2b" FT CDS join(610..2094,2094..3605) FT /codon_start=1 FT /ribosomal_slippage FT /gene="ORF2b" FT /product="polyprotein" FT /note="ORF2b produced by a -1 frameshift in ORF2a; FT translation occurs as an ORF2a-ORF2b fusion protein; FT contains RNA-dependent RNA polymerase" FT /db_xref="GOA:L0ANE3" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:L0ANE3" FT /protein_id="AFZ75400.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEVEPLSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLRHGVQYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQLSWADRFGDDDG FT EDVDIETSHPVAPSISKTRQKRSKRIEQFVDAVSECSFSFESAHEGVVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTNGTPLETPFLPTAMPFSYVGKSGVIFGEHAGKSVC FT AAVKDAIPVFPALEGFGWPERGSKAELDSLILQASRFNRTVCPSGLAKAVQSLQERYPK FT VPPRRCLRDEWRFDDIFDEVERILCETGEVNTASSPGVPLAGLANSNGEVRKLGRDLVC FT LAVVERLNALASVDPRQHNWTPRELVEKGLCDPVRLFVKNEPHPQKKLRERRFRLISSV FT SLVDQLVERMLFGPQNNTEISTWWQWPSKPGMGLLTREQIRLVWDDVFQKHQAHPAAEA FT DISGFDWSVQDWELWSDLAIRINRGSFSGNLRKAAISRYYCFMNSVFQLSDGTLIQQEL FT PGLMKSGSYCTSSTNSRIRCLMAELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKE FT YYPCKTRGRELLEFNFCSHLIRKGHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVW FT SRIEQYLRGIGRVSHKDGQEGQENQLQPKPARQEGPASPWAFGGAPASTGSSGSGLPDI FT WDGSWSTIF" FT gene 610..2427 FT /gene="ORF2a" FT CDS 610..2427 FT /codon_start=1 FT /gene="ORF2a" FT /product="protease and VPg" FT /db_xref="GOA:L0AQ78" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:L0AQ78" FT /protein_id="AFZ75399.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEVEPLSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLRHGVQYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQLSWADRFGDDDG FT EDVDIETSHPVAPSISKTRQKRSKRIEQFVDAVSECSFSFESAHEGVVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTNGTPLETPFLPTACHSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQLLKDLAGLREGVKQSSTPSSSKPAGSTERYVPPGSRKQSSHSKKGTQK FT SPPGVASGTSGGSTTSSMKSRESSAKPAK" FT gene 3448..4167 FT /gene="ORF4" FT CDS 3448..4167 FT /codon_start=1 FT /gene="ORF4" FT /product="coat protein" FT /db_xref="GOA:Q806Y2" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q806Y2" FT /protein_id="AFZ75401.1" FT /translation="MARKGKKINSNQNQQGKKGRRPRGRSAEPRLQRAPVAQASRISGM FT VPGPLSSNVWPVQRSVEFLMDFKRSATSADATIFNCVPFNLPRVWSLARCYSLWKPTRW FT DVVYLPEVSAATAGSIEMCYLYDYADTIPSDTGKMSRTAGFVTSSVWYGAEGCHLLTGG FT SARNAVVASMDCSRVDWKRVTSSIPSGVDPNVVNTILPARLAVRSSIKPAVDDAPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4448 BP; 976 A; 1152 C; 1278 G; 1042 T; 0 other; acaattgaag ctaggaaagg agcatattgc gtaagcgatc cctccttccg ccgaacaatt 60 gtagccactc tgctcgtcgt gcatgacacg gttggaagtt cttatacgac cgacagagca 120 gactgtggca aaagccatca ccgtgggcta tacgcacgca ctcacctggg tttggcattc 180 gcagacctgg gacgttgatt ctgtgaacga tccagttctc agagccgact tcgatcctga 240 taggaccggt tgggtggccg tgtcgtttgc ctgtacccag tgcacagctc attactatac 300 gtgtgagcag gtgaaattct tcaccaacat cccgtcggtt cactacgacg tggtgtgtgc 360 tgattgcgag cgccgtgttc tgcaggacga cgagatcgac cgtgagcacc aagagcgtaa 420 cgcagagctc tctgcttgta acgctcgggc cttgagtgag ggaagaccag ccagtctggt 480 gtatctctct cgggacgctt gtgatatttc tgggcactcc ggaacgtgcc ggtataacag 540 gtacctcaac ttttgagagt gccaacctgc cgacatccaa ggaacggtct tggctcagac 600 taacacggga tgggctcttc tgttgttggt cgctttctca ctcgaaccaa ggaaacgacg 660 agggtggatt ccaacctcct catcgtcttg gctgggttga tagcggccgc gatagtctca 720 gagcgcctac ccgtgacggc gtcattgtgg gcaatcccct cagctatcat agcaaactgg 780 atcgtgctat cagctcacga gagcttcagc cggttcgtgg agggggttga ggttgagcct 840 ttgtcaacac ttcggtatgg caaggttcaa tctgccccga ggttcgatcc ctcccggggt 900 tacgtggtcg atgtttctta caacggtcat gtgattccgg tgatattgga cttcactacg 960 acaacggctc tgtcggttcc ccaaagagta aaccctgggg tctcgatgga ggcaagtcgt 1020 ggggggctcc caccgacgtc cgtcaaactc gaagatgtgc cgccgagcgt tgtggtcttg 1080 taccacgact ccgtcaggct aggcctggga actagggtgc gaactcccac aggtcgtgat 1140 ctcctcatga ccaatcacca tatcgctgct ctagaaccta atggcatcgc gtacaagggt 1200 caccttaaga aagtggctct tgacgcgcca gtcatcgcat gtgaccatcc acacatagac 1260 tgcgcgtttt acgaggtgcc tcccaagatt tggtctctct tgggggtcaa gtctgccagt 1320 ttgaaacctt tggttaagca aactgcggtg tcactcttcg gtggctcgtc atctactgac 1380 ttctcgagtt gtgttgggat cgcccagatt ggggacaatc cgtttctgat aaggcatcaa 1440 agcacaactt gcagtgggtg gtcgggctcc ccgctctacc acaaaggttg cgtggttggc 1500 ttgcatatag gtgctgcgga tggttataat gtggcatcta atgtggcctg gtacttccat 1560 accttcaaga aggaagtagt cgttgagtct cctttcgaga tttacggcaa attccgggag 1620 gcaaactctg aggagtatga cgagagtcta cgacacggag ttcagtatgc ggagtacgac 1680 ttctctggtg ataccatccg ggcgtcttcc aacacctggg tgcgtgagag agagaggtac 1740 cacgctgagg aacgtcgtaa gtccggccag cttagctggg cagaccgttt tggtgacgac 1800 gatggcgagg atgttgatat cgagacatcg catcccgtag caccgtcaat atctaaaacg 1860 cggcagaaac ggtcaaagcg cattgagcag ttcgtcgatg cggtttctga gtgctccttc 1920 tcgttcgagt cagctcacga gggggtggtt ccagagacct cagcttatga ccacgttcct 1980 ttaaactgcc agggggcggg ctcgagccta cgggcgagtc cgcccttgga cggcttatcc 2040 aactcggaga ataccaatgg gactcctttg gagactccct tccttccgac ggcatgccat 2100 tcagctacgt tggaaaatcg ggtgtcatct ttggagaaca tgctgggaaa agtgtctgcg 2160 cagctgtcaa agacgcaatc ccagtattcc cagctcttga aggatttggc tggcctgaga 2220 gagggagtaa agcagagctc gactccctca tcctccaagc cagccggttc aacagaacgg 2280 tatgtccctc cgggctcgcg aaagcagtcc agtcactcca agaaaggtac ccaaaagtcc 2340 cccccaggcg ttgcctcagg gacgagtgga ggttcgacga catcttcgat gaagtcgaga 2400 gaatcctctg cgaaaccggc gaagtgaata ccgcctcctc gccgggggtg ccgctagcgg 2460 gtctcgccaa ttcaaatggt gaggttcgca agctggggag agatttggta tgtttagctg 2520 tggtagagcg attgaatgcc ttagcctcgg ttgacccccg ccagcacaac tggacaccca 2580 gggagctggt agagaaaggt ctttgtgacc ccgtgcgctt gttcgtcaag aatgagccac 2640 acccacagaa gaaattgcgt gaacgtcgat tcaggctgat ttcttctgtt tctctagttg 2700 accagctggt ggagcggatg cttttcgggc ctcagaacaa caccgagatc tcaacttggt 2760 ggcagtggcc ttcaaagccg ggcatgggtc tgttgacccg tgaacaaatc cgtttggtgt 2820 gggacgatgt gttccagaag caccaagccc accctgcggc tgaggcagac atatcggggt 2880 ttgactggtc cgttcaggac tgggagttgt ggtcagacct cgcgatccga atcaacaggg 2940 ggagtttctc aggaaacctc aggaaagcgg ctattagccg ttattactgt ttcatgaact 3000 ctgttttcca gctctcagat ggaaccctca tccagcagga gttgcccgga ttgatgaaat 3060 ccggctctta ctgcacctca tcaacaaact cacgcatacg ctgtctcatg gctgagctca 3120 tcggctcgcc gtggtgcata gctatgggtg atgattctgt ggaggggtgg atcgaggggg 3180 cccaatccaa gtacgccgcg ctaggtcaca cctgcaagga gtactaccca tgtaagacca 3240 ggggccgaga gctcctggaa ttcaatttct gttcacactt gatcaggaag ggtcatgctg 3300 agctaacttc atggccgaag gcgctgtttc gctttctgtc tagcaagcat gaggattttg 3360 aagatctgtg ggttgagctc cacacgtgcg gggtgtggag caggatcgaa caatatctgc 3420 gtgggatagg gcgtgtctcc cacaaagatg gccaggaagg gcaagaaaat caactccaac 3480 caaaaccagc aaggcaagaa gggccggcgt ccccgtgggc gttcggcgga gccccggctt 3540 caacgggctc cagtggctca ggcctcccgg atatctggga tggttcctgg tccactatct 3600 tctaatgtct ggccggttca acgctccgtg gaattcctga tggattttaa gcggagcgcc 3660 acctcggcag atgcgaccat attcaactgt gtgccgttca atctgccccg agtgtggagt 3720 cttgcacgtt gttactcctt gtggaagcca acaaggtggg atgttgtcta cctccctgag 3780 gttagtgcag cgacggctgg aagtattgag atgtgctatc tctacgacta tgccgataca 3840 atcccaagtg acacgggtaa gatgagcagg acggcgggct tcgtcacctc tagcgtctgg 3900 tacggcgcgg agggctgcca tttgttaact ggtggctcag cacggaatgc cgtggtcgcc 3960 tcgatggatt gttcccgagt cgactggaaa cgcgttacta gttcaattcc tagtggcgtg 4020 gatcccaacg tcgtaaacac catactgcca gctaggctag ctgtgcggtc gtcgattaaa 4080 ccggcggttg atgatgcacc aggcaagctg tatgccatcg tcagtatggt cctgcgggat 4140 ccggttgacc caacactcaa tacgtgaacc ggacctagtg gagacaggta ttggcatcaa 4200 tgatggccaa cggaccggct cagagatcga ctaccctgaa aaggatgttg agcgtttgcg 4260 aacgcgagct tggtcctaag aggacatatt ggcgtctgtc ccacgtgagg agttgcactc 4320 acattaatcc aaagcaaccc agacactgga tagtgtttac ccggttggtt tcggagctgc 4380 cgggaggacc tctgcacact ccgaattcct catttcatcc gagagaattc tcgggatggg 4440 tgggggag 4448 //