ID JX966245; SV 1; linear; genomic RNA; STD; VRL; 4447 BP. XX AC JX966245; XX DT 16-DEC-2012 (Rel. 115, Created) DT 16-DEC-2012 (Rel. 115, Last updated, Version 1) XX DE Rice yellow mottle virus isolate Mg15, complete genome. XX KW . XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-4447 RX PUBMED; 23123216. RA Rakotomalala M., Pinel-Galzi A., Mpunami A., Randrianasolo A., RA Ramavovololona P., Rabenantoandro Y., Fargette D.; RT "Rice yellow mottle virus in Madagascar and in the Zanzibar Archipelago; RT Island systems and evolutionary time scale to study virus emergence"; RL Virus Res. 0:0(2012). XX RN [2] RP 1-4447 RA Rakotomalala M., Pinel-Galzi A., Mpunami A., Randrianasolo A., RA Ramavovololona P., Rabenantoandro Y., Fargette D.; RT ; RL Submitted (12-OCT-2012) to the INSDC. RL RPB, IRD, 911 av Agropolis BP 64501, Monptellier 34080, France XX DR MD5; 9ff9261401c334706a233a85431d260f. DR EuropePMC; PMC3791421; 23830075. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4447 FT /organism="Rice yellow mottle virus" FT /host="Oryza sativa" FT /isolate="Mg15" FT /mol_type="genomic RNA" FT /country="Madagascar" FT /collection_date="2003" FT /db_xref="taxon:31744" FT gene 81..554 FT /gene="ORF1" FT CDS 81..554 FT /codon_start=1 FT /gene="ORF1" FT /product="putative movement and gene silencing protein" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:L0AND4" FT /protein_id="AFZ75390.1" FT /translation="MTRLEVLIRPTLQTVEKAIAAGYTHALTWIWHSQIWDVNGVSDPT FT LAADFNPERVGWVSVSFACTRCTAHYYTCEQVKFFTNIPSVHYDVVCADCERSVQQDDE FT IDREHDERNAEISACNARALSEGRPASLVYLSRDACDIPEHAGSCRFDKYLNF" FT gene 607..3605 FT /gene="ORF2b" FT CDS join(607..2091,2091..3605) FT /codon_start=1 FT /ribosomal_slippage FT /gene="ORF2b" FT /product="polyprotein" FT /note="ORF2b produced by a -1 frameshift in ORF2a; FT translation occurs as an ORF2a-ORF2b fusion protein; FT contains RNA-dependent RNA polymerase" FT /db_xref="GOA:L0AQK3" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:L0AQK3" FT /protein_id="AFZ75392.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIALSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKRDVVVESPFEIYGKFREVNS FT EEYDESLRHGVEYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKTRRKRSKRVEQFVDAASECSFSFESAHEGIVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTAGTPSATPSLPTEMPFSYVGKSGVIFGEHAGKSVC FT AAVKDAISVFPDLEGFGWPERGSKAELDSLILQAGRFNRTVCPPGLAQAVQSLQEKYPK FT VPPRRCLRDEWRFDDIFDEVERILCETGEVNSASSPGVPLTGLANSNGEVRRLARDLVC FT LAVVERLNALASVDPRQHNWTPRELVEKGLCDPVRLFVKNEPHPQKKLRERRFRLISSV FT SLVDQLVERMLFGPQNNTEISTWWQWPSKPGMGLLTPEQIRLVWDDVFQKHQAHPAAEA FT DISGFDWSVQDWELWSDLAIRINRGNFQGNLRKAAISRYYCFMNSVFQLSDGTLIQQEL FT PGLMKSGSYCTSSTNSRIRCLMAELIGSPWCIAMGDDSVEGWIEGAQSKYAALGHTCKE FT YYPCKTKGRELLEFNFCSHLIRRGHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVW FT SRIERYLRGIGRVSHKDGQEGQENQLQPRPARQEEEPTSSWAFGGAPASTGSSGSGVPD FT IWDGSWTTIF" FT gene 607..2424 FT /gene="ORF2a" FT CDS 607..2424 FT /codon_start=1 FT /gene="ORF2a" FT /product="protease and VPg" FT /db_xref="GOA:L0APJ8" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:L0APJ8" FT /protein_id="AFZ75391.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIALSAHESFSRFVEGVEIEPMSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPPTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVALDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKRDVVVESPFEIYGKFREVNS FT EEYDESLRHGVEYAEYDFSGDTIRASSNTWVRERERYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKTRRKRSKRVEQFVDAASECSFSFESAHEGIVPETSAYDHVPL FT NCQGAGSSLRASPPLDGLSNSENTAGTPSATPSLPTECPSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKSTQK FT SPPGDASGTSGGSTTSSMKSKESSAKPAK" FT gene 3445..4164 FT /gene="ORF4" FT CDS 3445..4164 FT /codon_start=1 FT /gene="ORF4" FT /product="coat protein" FT /db_xref="GOA:B5D688" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B5D688" FT /protein_id="AFZ75393.1" FT /translation="MARKGKKINSNQGQQGKKKSRRPRGRSAEPQLQRAPVAQASRISG FT TVPGPLSSNAWPVHSVEFLMDFKRSATSADAVAFNCVPFNLPRVWSLARCYSLWKPTRW FT DVVYLPEVSAATAGSIEMCYLYDYADAIPSDTGKMSRTAGFVTSSVWYGAEGCHLLNGG FT SARNAVVASMDCSRVGWRRVTSSIPSSVDPNVVNTILPARLAVRSSIKPTVDDVPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4447 BP; 969 A; 1146 C; 1285 G; 1047 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg acgaacaatt 60 gtatccacgc tgctacgtgt atgacacggt tggaagttct tatacgaccg actctgcaga 120 ccgtggaaaa ggccattgcc gcgggctata cgcacgcact cacctggatt tggcattctc 180 agatctggga cgttaacggc gtgagtgatc ccactcttgc cgctgacttc aaccccgaga 240 gggttggttg ggtgtctgtg tcatttgcct gtactcggtg cacggctcac tactatacgt 300 gtgagcaggt gaaattcttc accaacatcc cgtcggttca ttacgacgtg gtgtgtgctg 360 attgtgagcg cagtgttcag caggacgacg agatcgaccg cgaacacgac gagcgtaacg 420 cagagatttc tgcctgcaac gctcgggctt tgagtgaggg tcgaccagcc agtctggttt 480 acctctctcg ggacgcttgc gatattcccg agcacgccgg aagctgccgg tttgataagt 540 acctcaactt ttgagggaac attctgccga catccaagga gcggtcgtgg ttcagactaa 600 cacgggatgg gctcttctgt tgttggtcgc tttctcactc gcaccaagga aacgacgagg 660 gtggactcca acctcctcat cgtcttggct gggttgatag cggccgcgat agtttcagag 720 cgcctgcccg tgacggcgtc attgtgggca atcccctcag ctatcatagc aaactggatc 780 gcgctgtcag ctcacgagag cttcagccgg ttcgttgagg gggttgagat tgagcctatg 840 tccacacttc ggtatgggaa ggttcagtct gctccccggt ttgatccctc ccggggttat 900 gtggtcgatg tttcgtacaa cggccacgtg attccggtga tattagactt caccacgact 960 acggctctgt cggttcccca aagagtaaac cctggggtct cgatggaggc tagtcgtggg 1020 gggctcccac cgacgtccgt caaactcgaa gatgtgccgc cgagcgttgt ggttttgtac 1080 cacgactctg tcaggctagg ccttggaact agagtgcgaa ctcccacggg tcgtgatttg 1140 ctcatgacca atcaccatat cgctgctcta gagcccaatg gcatcgcgta taagggtcac 1200 cttaagaaag tggctctaga cgcgccagtc atcgcatgtg accatccaca catagactgt 1260 gcgttttacg aggtgcctcc caagatctgg tctctcttgg gggtcaagtc tgccagtttg 1320 aaacctttgg ttaaacagac tgcggtgtca ctcttcggag gctcgtcatc cactgacttc 1380 tcgagttgtg ttgggatagc ccagattggg gataatccat tcctgataag gcatcaaagc 1440 acaacttgca gtggctggtc gggctccccg ctctaccaca aaggttgcgt ggttggctta 1500 catataggtg ctgcggatgg ttataatgtg gcatctaatg tagcctggta cttccatacc 1560 ttcaaaaggg atgttgttgt tgagtctcca ttcgagattt acggcaaatt ccgggaagta 1620 aactctgagg agtatgacga aagtctgcgc catggggtgg aatatgcgga gtacgatttc 1680 tctggtgaca caatccgggc gtcttccaac acctgggtgc gtgagagaga gagataccac 1740 gctgaggaac gtcgtaagtc cggccagctc agctgggcag atcgttttgg tgacgacagt 1800 ggcgaggatg ttgatatcga gacatcgcat cccgtagcac cgtcaatatc taaaacgcgg 1860 cggaaacggt caaagcgcgt tgagcagttc gtcgacgcgg cttctgagtg ctccttctcg 1920 ttcgagtcag ctcacgaggg gattgtgcca gagacctcag cttatgacca cgttccttta 1980 aactgccagg gggcgggctc gagccttcgg gcgagtccgc ccttggacgg cttatccaac 2040 tcggagaata ccgctgggac tccctcggcg accccctccc ttccgacgga atgcccttca 2100 gctacgttgg aaaatcgggt gtcatctttg gagaacatgc tgggaaaagt gtctgcgcag 2160 ctgtcaaaga cgcaatctca gtattcccag atcttgaagg atttggctgg cctgagaggg 2220 gaagtaaagc agagcttgac tccctcatcc tccaagccgg ccggttcaac agaacggtat 2280 gtccccccgg gctcgcgcaa gcagtccaat cactccaaga aaagtaccca aaagtccccc 2340 ccaggcgatg cctcagggac gagtggaggt tcgacgacat cttcgatgaa gtcgaaagaa 2400 tcctctgcga aaccggcgaa gtgaactccg cttcctcgcc gggggtgccg ctgacgggcc 2460 ttgccaattc caatggtgag gtacggaggc tcgcgagaga tttggtatgt ttagctgtgg 2520 tggagcgatt gaatgcctta gcctcggttg acccccgcca gcataactgg acacccaggg 2580 agctggtaga gaaaggtctt tgtgaccctg tgcgtttgtt tgtcaagaac gaaccacacc 2640 cacagaagaa attgcgtgaa cgcagattca ggctgatttc ttctgtttct ctagttgacc 2700 agctggtgga gcggatgctt ttcgggccgc agaacaacac tgagatttca acttggtggc 2760 agtggccttc gaagccgggc atgggtctgt tgacccctga acaaatccgt ttggtgtggg 2820 acgacgtgtt ccagaagcac caagcccacc ctgcggctga ggcagacata tcggggtttg 2880 attggtccgt tcaggactgg gagttgtggt cagacctcgc gatccgtata aacagaggga 2940 attttcaggg aaacctcagg aaagcggcca tcagccgtta ttactgtttt atgaactctg 3000 ttttccagct ctcagatgga actctcatcc agcaggagtt gcccgggctt atgaagtccg 3060 gctcttactg cacctcatcc accaattcac gcatacgctg cctaatggct gagctaatcg 3120 gctcgccctg gtgcatagct atgggtgatg attcggtgga aggatggatt gagggtgccc 3180 agtccaagta cgccgcgttg ggtcacacct gcaaggagta ctacccatgc aagaccaagg 3240 ggcgtgagct cctggaattc aacttctgtt cacacttgat caggaggggt catgctgagc 3300 tcacttcatg gccgaaggcg cttttccgct ttctgtcgag caagcatgag gactttgaag 3360 atctgtgggt tgagctccac acgtgcgggg tgtggagcag gatcgaacga tatctgcgtg 3420 ggatagggcg agtctcccac aaagatggcc aggaagggca agaaaatcaa ctccaaccaa 3480 ggccagcaag gcaagaagaa gagccgacgt cctcgtgggc gttcggcgga gccccagctt 3540 caacgggctc cagtggctca ggcgtcccgg atatctggga cggttcctgg accactatct 3600 tctaacgcct ggccggtcca ctccgtggaa ttcctgatgg attttaagcg gagtgccaca 3660 tcggcggatg cggtagcatt taattgtgtg ccgtttaatc tgcctcgggt gtggagtctc 3720 gcacgttgtt actcgctgtg gaagccaaca cggtgggatg tagtttacct ccccgaggtg 3780 agcgcggcga cagctggaag tattgagatg tgttatctct acgactatgc tgatgctatc 3840 ccaagtgaca cgggcaagat gagcaggacg gcgggcttcg tcacctctag cgtttggtac 3900 ggcgcggagg gctgccattt gttgaatggc ggttcagcac ggaatgccgt ggtcgcctcg 3960 atggattgct ctcgagtcgg ctggagacgc gtaactagtt caattcctag tagcgtggat 4020 cccaacgtcg taaataccat actgccagca aggctagctg tgcggtcgtc aatcaaaccg 4080 acggtcgatg atgtgccggg gaaactctat gctatcgtca gtatggtcct gcgggatccg 4140 gttgatccaa cactcaatac gtgaaccgga ttcaatggag ataggtattg gcaccagtga 4200 tgatccacgg attagctcag agatcgacta ccctgaaaag gatgttgagc gtttgcgaac 4260 gcgggctgag tcctacgaga tgatactggc gcctatccca tgtggggaat cgcacccacg 4320 tttcaaccca aagcgatcca cacgctggat agcgtttacc tggttggttt cggagctgcc 4380 aggaggacct cttcacactc cgaattccac attctttccg agagaattct cgggatgggt 4440 gggggag 4447 //