ID JX961551; SV 1; linear; genomic RNA; STD; VRL; 4446 BP. XX AC JX961551; XX DT 16-DEC-2012 (Rel. 115, Created) DT 16-DEC-2012 (Rel. 115, Last updated, Version 1) XX DE Rice yellow mottle virus isolate Tz16, complete genome. XX KW . XX OS Rice yellow mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-4446 RX PUBMED; 23123216. RA Rakotomalala M., Pinel-Galzi A., Mpunami A., Randrianasolo A., RA Ramavovololona P., Rabenantoandro Y., Fargette D.; RT "Rice yellow mottle virus in Madagascar and in the Zanzibar Archipelago; RT Island systems and evolutionary time scale to study virus emergence"; RL Virus Res. 0:0(2012). XX RN [2] RP 1-4446 RA Rakotomalala M., Pinel-Galzi A., Mpunami A., Randrianasolo A., RA Ramavovololona P., Rabenantoandro Y., Fargette D.; RT ; RL Submitted (12-OCT-2012) to the INSDC. RL RPB, IRD, 911 av Agropolis BP 64501, Monptellier 34080, France XX DR MD5; 606bcfe9e4265fcee9cb3e97b1ebb2ee. DR EuropePMC; PMC3791421; 23830075. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4446 FT /organism="Rice yellow mottle virus" FT /host="Oryza sativa" FT /isolate="Tz16" FT /mol_type="genomic RNA" FT /country="Tanzania" FT /collection_date="2002" FT /db_xref="taxon:31744" FT gene 81..554 FT /gene="ORF1" FT CDS 81..554 FT /codon_start=1 FT /gene="ORF1" FT /product="putative movement and gene silencing protein" FT /db_xref="InterPro:IPR021971" FT /db_xref="UniProtKB/TrEMBL:L0AQJ4" FT /protein_id="AFZ75382.1" FT /translation="MTRLEVLIRPTEQTVAKANAVGYTHTLTWVWYSQTWDVDSVNDPV FT LRADFDPNRSGWVAVSFACTQCTAHYYTCEQVKFFTNIPPIHYDVVCADCERRVQQDDE FT IDREHQERNAEISACNARALSEGRPASLVYLSRDACDIPEHSGTCRYDKYLNF" FT gene 608..3603 FT /gene="ORF2b" FT CDS join(608..2092,2092..3603) FT /codon_start=1 FT /ribosomal_slippage FT /gene="ORF2b" FT /product="polyprotein" FT /note="ORF2b produced by a -1 frameshift in ORF2a, FT translation occurs as an ORF2a-ORF2b fusion protein; FT contains RNA-dependent RNA polymerase" FT /db_xref="GOA:L0AQ68" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:L0AQ68" FT /protein_id="AFZ75384.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPLSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPRTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVVLDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLRHGVQYAEYDFSGDTIRASSNTWVREREKYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKTRRKRSKRVEQFVDAVSECSFSFESAHEGITPETSAYDHVPL FT NCQGAGSSLRASPPLDGLFNSESTTGTPLATPSLPTEMPFSYVGKSGVVFGEHAGKSVC FT AAVKDAITVFPDLEGFGWPERGSKAELDSLILQAGRFNRTVCPSGLAEAVQSLQEKYPK FT VPPRRCLRDEWRFDDIFDEVERILCETGEVNSASSPGVPLAGLANSNGEVRKLGRDLVC FT LAVVERLNALASVDPRQHNWTPRELVEKGLCDPVRLFVKNEPHPQKKLRERRFRLISSV FT SLVDQLVERMLFGPQNNTEISTWWQWPSKPGMGLLTREQIRLVWDDVFQKHQAHPAAEA FT DISGFDWSVQDWELWSDLAIRINRGSFSGNLRKAAISRYYCFMNSVFQLSDGTLIQQEL FT PGLMKSGSYCTSSTNSRIRCLMAELIGSPWCIAMGDDSVEGWIEGAQSKYALLGHTCKE FT YYPCKTRGRELLEFNFCSHLIRKGHAELTSWPKALFRFLSSKHEDFEDLWVELHTCGVW FT SKIEQYLRGIGRVSHKDGQEGQENQLQPKSARQEEPPPSWAVGGTPASTGSSGSGLPDI FT WDGSWTTIF" FT gene 608..2425 FT /gene="ORF2a" FT CDS 608..2425 FT /codon_start=1 FT /gene="ORF2a" FT /product="protease and VPg" FT /db_xref="GOA:L0ANN3" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:L0ANN3" FT /protein_id="AFZ75383.1" FT /translation="MGSSVVGRFLTRTKETTRVDSNLLIVLAGLIAAAIVSERLPVTAS FT LWAIPSAIIANWIVLSAHESFSRFVEGVEIEPLSTLRYGKVQSAPRFDPSRGYVVDVSY FT NGHVIPVILDFTTTTALSVPQRVNPGVSMEASRGGLPRTSVKLEDVPPSVVVLYHDSVR FT LGLGTRVRTPTGRDLLMTNHHIAALEPNGIAYKGHLKKVVLDAPVIACDHPHIDCAFYE FT VPPKIWSLLGVKSASLKPLVKQTAVSLFGGSSSTDFSSCVGIAQIGDNPFLIRHQSTTC FT SGWSGSPLYHKGCVVGLHIGAADGYNVASNVAWYFHTFKKEVVVESPFEIYGKFREANS FT EEYDESLRHGVQYAEYDFSGDTIRASSNTWVREREKYHAEERRKSGQLSWADRFGDDSG FT EDVDIETSHPVAPSISKTRRKRSKRVEQFVDAVSECSFSFESAHEGITPETSAYDHVPL FT NCQGAGSSLRASPPLDGLFNSESTTGTPLATPSLPTECLSATLENRVSSLENMLGKVSA FT QLSKTQSQYSQILKDLAGLRGEVKQSLTPSSSKPAGSTERYVPPGSRKQSNHSKKSTQK FT SPQGDALGTSGGSTTSSMKSRESSAKPAK" FT gene 3446..4165 FT /gene="ORF4" FT CDS 3446..4165 FT /codon_start=1 FT /gene="ORF4" FT /product="coat protein" FT /db_xref="GOA:Q4QZL2" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q4QZL2" FT /protein_id="AFZ75385.1" FT /translation="MARKGKKTNSNQNQQGKKSRRPRGRSAEPRLQRAPVAQASRISGT FT VPGPLSSNVWPINRSVEFLMDFKRSATSTEATILNCVPFNLPRVWSLARCYSLWKPTRW FT DVVYLPEISAAAAGSIEMCYLYDYADTVPNDTGKMSRTAGFVTSSVWYGAEGCHLLTGG FT SARNAVVASMDCSRVDWKRVTSSIPSGVDPNVVNTILPARLAVRSSIKPAVDDTPGKLY FT AIVSMVLRDPVDPTLNT" XX SQ Sequence 4446 BP; 991 A; 1154 C; 1271 G; 1030 T; 0 other; acaattgaag ctaggaaagg agcatattgc gaaagcgatc cctccttccg ccgaacaatt 60 gtagccacgc tgcatcgtgt atgacacggt tggaagttct tatacgaccg acagagcaga 120 ctgtggcaaa agccaacgcc gtgggctata cgcacacact cacctgggtt tggtattctc 180 agacctggga cgttgactct gtgaacgatc ctgttctcag agccgacttc gaccccaaca 240 ggtcgggttg ggtggctgtg tcgtttgcct gtactcagtg cacggctcac tactatacgt 300 gtgagcaggt gaagttcttc accaacatcc cgccgattca ctacgacgtg gtgtgtgctg 360 attgcgagcg acgtgttcag caggacgacg agatcgaccg tgaacaccaa gagcggaacg 420 cggagatttc tgcctgcaac gctcgagctt tgagtgaggg gaggccagca agtctggtat 480 acctctctcg ggacgcttgc gatatacctg agcactccgg aacgtgccgg tacgacaagt 540 acctcaactt ttgagggcgt cagtctgccg acatccaagg aacggtcttg gttcagacta 600 acacgggatg ggctcttctg ttgttggtcg ctttctcact cgcaccaagg aaacgacgag 660 ggtggattcc aacctcctca tcgtcttggc tgggttgata gcggccgcga tagtctcaga 720 gcgtctaccc gtgacggcgt cattgtgggc aatcccctca gctatcatag caaactggat 780 cgtgctgtca gctcacgaga gcttcagccg gttcgtggag ggggttgaga ttgagccctt 840 gtcaacactt cggtatggca aggttcaatc tgccccaagg tttgatccct cccggggtta 900 cgtggtcgat gtgtcttaca acggccatgt gatccctgtg atattagact tcaccacgac 960 cacggcttta tcggttcccc aaagagtaaa ccctggggtc tcgatggagg cgagtcgagg 1020 agggctccca cggacgtccg tcaaactcga agatgtgccg ccgagcgttg tggtcttgta 1080 ccacgactcc gtcaggctag gcctgggaac tagggtgcga actcccacag gtcgtgatct 1140 cctcatgacc aatcaccata tcgctgctct ggaacccaat gggattgcgt ataagggcca 1200 ccttaagaaa gtggtgctgg acgcgccagt catcgcatgt gaccatccac acatagactg 1260 cgcgttttac gaggtccctc ccaagatttg gtctctcttg ggggttaagt ctgccagtct 1320 gaaacccctg gttaaacaga ctgcggtgtc actcttcggt ggctcgtcat ctactgactt 1380 ctcaagctgt gttgggatag cccagattgg ggacaatccg ttcctgataa ggcatcaaag 1440 cacaacctgc agtggatggt cgggctcccc gctctaccac aaaggttgcg tggttggtct 1500 acatataggt gctgcggatg gttataatgt ggcgtctaat gtagcttggt acttccatac 1560 cttcaagaag gaagtggtcg tagagtctcc ctttgagatt tacggcaaat tccgggaggc 1620 taactccgag gagtatgacg agagtctgcg acacggagta caatatgcgg agtacgactt 1680 ctctggtgat accatccggg cgtcttccaa cacctgggtg cgtgagagag agaagtacca 1740 cgctgaggaa cgtcgtaagt ccggccagct cagctgggca gatcgttttg gtgacgacag 1800 tggcgaggat gttgatatcg agacatcgca tcccgtagca ccgtcaatat ctaagacgcg 1860 gcggaaacgg tcaaagcgcg ttgagcagtt cgtcgacgcg gtttccgaat gttctttctc 1920 gttcgagtca gctcacgaag gaataactcc ggagacctct gcttatgacc acgttccttt 1980 aaactgccag ggggcgggct cgagcctacg ggcgagtccg cccttggacg gcttattcaa 2040 ctcggagagt accactggga ctcccttggc gactccctcc cttccgacgg aatgcctttc 2100 agctacgttg gaaaatcggg tgtcgtcttt ggagaacatg ctgggaaaag tgtctgcgca 2160 gctgtcaaag acgcaatcac agtattccca gatcttgaag gatttggctg gcctgagagg 2220 ggaagtaaag cagagcttga ctccctcatc ctccaagccg gccggttcaa cagaacggta 2280 tgtccctccg ggctcgcgga agcagtccaa tcactccaag aaaagtaccc aaaagtcccc 2340 ccaaggcgat gccttaggga cgagtggagg ttcgacgaca tcttcgatga agtcgagaga 2400 atcctctgcg aaaccggcga agtgaattcc gcttcctcgc cgggggtgcc gcttgcgggc 2460 ctcgccaatt ccaatggtga ggttcggaag ctagggagag atttggtgtg tttagctgtg 2520 gtagagcgat tgaatgcctt agcctcggtt gacccccgcc agcataactg gacacccagg 2580 gagctggtag agaagggtct ttgtgaccct gtgcgcttgt tcgttaagaa cgagccacac 2640 ccacagaaga aattgcgtga acgtcgattc aggctgattt cctctgtttc tctagttgac 2700 cagctggtgg agcggatgct tttcgggcct cagaacaaca ccgagatctc aacttggtgg 2760 cagtggccct cgaagccggg catgggtctg ttgacccgtg aacaaatccg tttggtgtgg 2820 gatgatgtat tccagaagca ccaagcccac cctgcggctg aggcagacat atcggggttt 2880 gactggtccg tccaggactg ggagttgtgg tcagacctcg cgatccgaat taacagaggg 2940 agtttctccg gaaacctcag gaaagcggct attagtcgtt actactgttt catgaactct 3000 gttttccagc tctcagatgg aaccctcatt cagcaggagt tgcccggact catgaagtct 3060 ggttcgtact gcacctcctc cacgaattca cgcatacgct gtctcatggc tgagctcatc 3120 ggctcgccgt ggtgtatagc tatgggtgat gattcagtgg aggggtggat tgagggggcc 3180 caatccaagt acgccctgct aggtcatacc tgcaaggagt actacccatg taagactaga 3240 ggccgtgagc ttctggaatt caatttctgt tcacatttga tcaggaaggg tcatgctgag 3300 ctaacttcat ggccgaaggc gttgttccgc tttctgtcta gcaagcatga ggattttgaa 3360 gatctgtggg ttgagctgca cacgtgcggg gtgtggagca agatcgaaca atatctgcgt 3420 gggatagggc gtgtctccca caaagatggc caggaagggc aagaaaacca actccaacca 3480 aaatcagcaa ggcaagaaga gccgccgccc tcgtgggcgg tcggcggaac cccggcttca 3540 acgggctcca gtggctcagg cctcccggat atctgggacg gttcctggac cactatcttc 3600 taatgtctgg ccgattaacc gctccgtgga attcttgatg gatttcaagc ggagcgccac 3660 ctcgacagag gcgaccatac ttaattgtgt gccgttcaat ctgcctcgag tgtggagtct 3720 tgcacgttgc tactccttgt ggaagccaac aaggtgggac gtcgtctatc tccctgagat 3780 tagcgcggca gcagctggaa gtatcgagat gtgttatctc tacgactatg ctgacacggt 3840 cccaaatgac acgggcaaga tgagcaggac agcgggcttc gtcacctcca gcgtttggta 3900 cggcgcggag ggctgccatt tgttaactgg cggctcagca cgaaatgccg tggttgcctc 3960 gatggattgt tcccgagtcg actggaaacg cgttactagt tcaatcccta gtggcgtgga 4020 tcccaacgtt gtaaacacca tactgccagc taggctagct gtgcggtcgt cgattaaacc 4080 ggcggttgat gatacaccag gtaaactgta cgctatcgtc agtatggtcc tgcgggaccc 4140 agttgatcca acactcaata cgtgaactgg gtccagtgga gataggtatt ggcaccagtg 4200 atggccaacg gattagctca gagatcgact accctgaaaa ggatgttgag cgttcgcgaa 4260 cgcgggctta atcctaagag gacatactgg cgtctatccc acgtgaggag ttgcactcac 4320 gtcaacccaa agcaacccag gcactggata gtgcttaccc agccggtttc ggagctgctg 4380 ggaggacctt ttcacactcc gaattcccca cgtcttccga gagaattctc gggatgggtg 4440 ggggag 4446 //