ID JX914662; SV 1; circular; genomic DNA; STD; VRL; 2736 BP. XX AC JX914662; XX DT 28-DEC-2012 (Rel. 115, Created) DT 28-DEC-2012 (Rel. 115, Last updated, Version 1) XX DE Cotton leaf curl Multan virus isolate JS-Hi-A-3-2, complete genome. XX KW . XX OS Cotton leaf curl Multan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2736 RA Ji Y., Zhang H., Cai Z., Zhou Y.; RT "Genomic characterization of cotton leaf curl Multan virus infecting RT Hibiscus rosa-sinensis in Jiangsu provinces"; RL Unpublished. XX RN [2] RP 1-2736 RA Ji Y., Zhang H., Cai Z., Zhou Y.; RT ; RL Submitted (09-OCT-2012) to the INSDC. RL Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, RL Zhongling Street No. 50, Nanjing, Jiangsu 210014, China XX DR MD5; b3e42e99bba854e20c825e00c535f736. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2736 FT /organism="Cotton leaf curl Multan virus" FT /host="Hibiscus rosa-sinensis" FT /isolate="JS-Hi-A-3-2" FT /mol_type="genomic DNA" FT /country="China:Jiangsu" FT /collection_date="09-May-2012" FT /db_xref="taxon:223252" FT gene 115..480 FT /gene="V2" FT CDS 115..480 FT /codon_start=1 FT /gene="V2" FT /product="V2 protein" FT /db_xref="GOA:A5HBX9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:A5HBX9" FT /protein_id="AGA96094.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYDLIRDL FT ICILRSRNYVEASCRYRHFNARVESTSASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT EAQNISDVQKSGCSKGL" FT gene 275..1045 FT /gene="V1" FT CDS 275..1045 FT /codon_start=1 FT /gene="V1" FT /product="V1 protein" FT /db_xref="GOA:A5HBY0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A5HBY0" FT /protein_id="AGA96095.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTNRVAVPIVRVTKQQAWT FT NRPMNRKPRIYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTRNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1048..1452) FT /gene="C3" FT CDS complement(1048..1452) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:A5HBY1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A5HBY1" FT /protein_id="AGA96096.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHFNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLHPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIEFKLY" FT gene complement(1145..1597) FT /gene="C2" FT CDS complement(1145..1597) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:A5HBY2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A5HBY2" FT /protein_id="AGA96097.1" FT /translation="MRSSSLSKDHCTQLPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDNQPLQPSIHDEYGHTHDPNPVQLQH FT SESSGTAQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISEQSRCNFN" FT gene complement(1494..2585) FT /gene="C1" FT CDS complement(1494..2585) FT /codon_start=1 FT /gene="C1" FT /product="C1 protein" FT /db_xref="GOA:A5HBY3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5HBY3" FT /protein_id="AGA96098.1" FT /translation="MAPPKRFKIQAKNYFLTYPQCSLTKEEALSQIQAINTPSNKKYIK FT VCRELHEDGSPHLHVLIQFEGKLICTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKDYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH FT NLNANLDRIFQEPPAPYVSPFSFSSFDQVPEELQVWALDNVVDAAARPLRPRSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLNEEKNTALKNWALKNAIFITLEGPL FT YSASNQSTAQGSEETQQEEESRS" FT gene complement(2126..2428) FT /gene="C4" FT CDS complement(2126..2428) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C1K010" FT /protein_id="AGA96099.1" FT /translation="MGALISMCSSSSRANSSARITDSSTWYPQPGQHISIRTFRELNQA FT QMSRTTSTRTGTLSSGESFRSMEDQQEEDNRQPTTLTPQRLTREVSQRLLESLRN" XX SQ Sequence 2736 BP; 706 A; 545 C; 643 G; 842 T; 0 other; accggatggc cgcgcgattt tttgtgggcc ccctatttat gagattgctc cctcaaagct 60 aaataacgct cccgcccact ataagtactt gcgcactaag tttcaaattc aaacatgtgg 120 gatccattgt taaacgaatt tcctgatacg gtgcacgggt ttcggtgtat gctttctgtc 180 aaatatttgc aacttttgtc gcaggattat tcaccggata ccctaggtta cgatttaata 240 cgggatttaa tctgtattct acgttcccgt aattatgtcg aagcgagctg cagatatcgt 300 catttcaacg cccgcgtcga aagtacgtcg gcgtctgaac ttcggcagcc catacaccaa 360 ccgtgttgct gtccccattg tccgcgtcac aaaacaacag gcatggacaa acaggcctat 420 gaacaggaag cccagaatat atcggatgta cagaagtccg gatgttccaa agggttgtga 480 aggcccatgt aaggtacagt cttttgagtc cagacatgat gttgttcata ttggtaaggt 540 aatgtgtatt tctgatgtta ctcgtggtgt cggtttgacc catcgtattg gtaaacgttt 600 ttgtgtcaag tcagtttatg ttttaggtaa gatatggatg gatgaaaata taaagaccag 660 gaatcacacg aattcggtca tgttcttttt agttcgcgat cgacgacctg ttgacaaacc 720 tcaggatttt ggtgaggtat tcaatatgtt tgataacgaa cccagtacag caactgtgaa 780 gaatagtcat agggaccgtt atcaggtgtt gaggaaatgg catgcaaccg ttacgggtgg 840 tcaatatgcg agtaaggaac aggctttggt caagaagttt gtcagagtta acaattatgt 900 tgtttacaat caacaggaag caggaaaata cgagaatcat acggaaaatg cgttaatgct 960 ttatatggct tgtacccacg ctagcaaccc tgtttatgct acgttgaaga ttaggatata 1020 tttttatgac tctgtaacga attgatgtta ataaagtttg aattctattt ctgaatattg 1080 atctacatac atagtttgtt ggattacatt gtacaataca tgttctacag ctttaataac 1140 taaattaatt gaaattacac cgagattgtt cagatatttg aggacttggg ttttgaatac 1200 ccttaagaaa agaccagtct gagggtgtaa ggtcgtccag attcggaagg ttagaaaaca 1260 cttgtgcagt cccagagctt tccgagtgtt gtagttgaac tggattcgga tcgtgagtat 1320 gtccatattc gtcgtgaatg gacggttgaa gtggctgatt atcttgaaat aaaggggatt 1380 tggaacctcc cagatatatg cgccattccc tgcttgagct gcagtgatgg gttcccctgt 1440 gcgtgaatcc atggttgtgg cagttgattg acagataata agaacacccg cattcaagat 1500 ctactctcct cctcctgttg cgtctcttcg cttccctgtg ctgtactttg attggaagct 1560 gagtacagtg gtccttcgag agtgatgaag atcgcatttt ttagggccca attctttaat 1620 gctgtgtttt tttcctcgtt gaggaattcc ttataactgc tgttgggacc aggattgcac 1680 aagaagattg tcggtattcc gcctttaatt tgaactggct taccgtattt tgtgttggac 1740 tgccagtctc tttgggcccc catgaactct ttaaagtgtt tgaggaaatg cgggtcgacg 1800 tcatcaatga cgttgtacca ggcgtcgtta ctgtatactt tgggactcag gtccagatgt 1860 ccgcacaaat agttatgtgg tcccaatgac ctagcccaca tcgtctttcc cgtacgacta 1920 tctccctcaa ttactatact ccgaggtcta aggggccgcg cagcggcatc gacaacgtta 1980 tccaacgccc aaacttgaag ttcttctgga acttgatcga acgaagaaaa agaaaaagga 2040 gaaacataag gagctggtgg ctcctgaaag atcctgtcta gatttgcatt taaattatga 2100 aattgtagta caaaatcttt aggagctagt tccttaatga ctctaagagc ctctgactta 2160 cttcccgcgt taagcgctgc ggcgtaagcg tcgttggctg tctgttgtcc tcctcttgct 2220 gatcttccat cgatctgaaa ctctccccac tcgagagtgt ccccgtcctt gtcgatgtag 2280 tccttgacat ctgagcttga tttagctccc tgaatgttcg gatggaaatg tgctgacctg 2340 gttggggata ccaggtcgaa gaatctgtta ttcgtgcaga tgagtttgcc ctcgaactgg 2400 atgagcacat ggagatgagg gctcccatct tcgtgtaact ctctgcagac tttgatgtat 2460 tttttattcg agggtgtgtt gatggcttga atttgggaaa gtgcttcctc tttagtgagt 2520 gagcactgtg gataagtgag gaaataattt ttggcttgta ttttaaaacg tttgggggga 2580 gccattgact ttggtcaatt ggagacaact gattggattt tactctggca attggagact 2640 ggagacaatt tatagtgtct ccaaatggca ttatcgtaat ttgagaaatc atttcaaaat 2700 cctcacgctc caaaaagcgg ccatccgtat aatatt 2736 //