ID JX912715; SV 1; linear; genomic RNA; STD; VRL; 6636 BP. XX AC JX912715; XX DT 02-JAN-2013 (Rel. 115, Created) DT 02-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Tobacco rattle virus strain 1AKBH replication-associated protein 2, DE replicase-associated protein 1, movement protein (P1a), and 16K protein DE genes, complete cds. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-6636 RA Robertson N.L.; RT "Molecular Detection of Tobacco rattle virus in Bleeding Heart (Dicentra RT spectabilis (L.) Lem)"; RL Unpublished. XX RN [2] RP 1-6636 RA Robertson N.L.; RT ; RL Submitted (06-OCT-2012) to the INSDC. RL USDA-ARS, Crop Improvement and Protecton Unit, 1636 E. Alisal Street, RL Salinas, CA 93905, USA XX DR MD5; 15f0489836c89f6b9e63e2c7fd77d497. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6636 FT /organism="Tobacco rattle virus" FT /host="Dicentra spectabilis (L.) Lem (bleeding heart)" FT /strain="1AKBH" FT /mol_type="genomic RNA" FT /country="USA:Wasilla, AK" FT /collected_by="Nancy Robertson" FT /collection_date="Aug-2010" FT /db_xref="taxon:12295" FT CDS 49..5172 FT /codon_start=1 FT /transl_except=(pos:3610..3612,aa:OTHER) FT /product="replication-associated protein 2" FT /db_xref="GOA:L0JTN3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:L0JTN3" FT /protein_id="AGB34172.1" FT /translation="MANGNFKLSQLLNVDEMSAEQRSHFFDLMLTKPDCEIGQMMQRVV FT VDKVDDMLRERKTKDPVIVHEVLSQKEQNKLMEIYPEFNIVFKDDKNMVHGFAAAERKL FT QALLLLDRVPALQEVDDIGGQWSFWVTRGEKRIHSCCPNLDIRDDQREISRQIFLTAIG FT DQARSGKRQMSENELWMYDQFRENITAPNAVRCNNTYQGCTCRGFSDGKKKGAQYAIAL FT HSLYDFKLKDLMATMVEKKTKVVHAAMLFAPESMLVDEGPLPSVDGYYMKKNGKIYFGF FT EKDPSFSYIHDWEEYKKYLLGKPVSYQGNVFYFEPCKREEIRCFFQSTGIAGVPRRSLS FT SQEYYRRIYISRWENMVVVPIFDLVESTRELVKKDLFVEKQFMDKCLDYIARLSDQQLT FT ISNVKSYLSSNNWVLFINGAAVKNKQSVDSRDLQLLAQTLLVKEQVARPVMRELREAIL FT TETKPITSLSDVLSLISRKLWKQFANKIAVGGFVGMVGTLIGLYPKKVLAWAKDTPNGS FT ELSYENTHKTKVIVFLSVVYAIGGITLMRRDIRDGLVKKLCDMFDIKRGAHVLDVENPC FT RYYEINDFFSSLYSAPESGETVLPDLSDVKAKSDKLLQQKKEIADEFLCAKFSNYSGSS FT ARTSPPSVVGSSRSGLGLLLEDSNVLTQARVGVSRKVNDEEIMEQFLGGLIDTEEEIDE FT IISAFLAECEKGETSGTKALCKPLTPPGFENVLPTVKPLSNKGKTVKSTDYFQVMGGER FT LPKRPIVSGDNSVDARREFLYYLDAERVAQNDEIMSLYRDYSRGVIRTGGQNYPHGLGV FT WDVEMKNWCIRPVVTEHAYVFQPDKRMNDWSGYLEVAVWERGMLVNDFAVERMSDYVIV FT CDQTYLCNNRLILDNLSALDLGPINCSFELVDGVPGCGKSTMIVNSANPCVDVVLSTGR FT AATDDLIERFASKGFPCKLKRRVTTVDSFLMHCVDGSLTGNVLHFDEALMAHAGMVYFC FT AQIARAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLN FT KFYTGDVRTHNATANSMSVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAK FT VSTVHESQGETFKDVVLVRTKPTDDSIARGREYMIVALSRHTQSLVYETVKEDDVSKEI FT RESAALTKAALARFFVTETVLXRFRSRFDVFRHHEGPCAVPDSRTITDLEMWYDALFPG FT NSLRDSGLDGYLVATTDCNLRLDNVTIKSGNWKDKFAENETFLKPVIRTAMPDKRKTTQ FT LESLLALQKRNQAAPDLQENVHATVLIEETMKKLRSVVYDVGKIRADPIVNRAQMERWW FT RNQSTAVQAKVVADVRELHEIDYSSYMYMIKSDVKPKTDLTPQFEYSALQTVVYHEKLI FT NSLFGPIFKEINERKLDAMQPHFVFNTRMTSSDLNDRVKFLNTEAAYDFVEIDMSKFDK FT SANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKSGDADTY FT NANSVRTECALLSELPKEKAVMVTYGGDDSLIAFPRGTQFVDPCPKLVGKWNFECKIFK FT YDVPMFHGKFLQKTSSCYEFVPDPVKVLMKLGKKSIKDVLHLVAIYISLNDSNRALGNY FT MVVSKLSEFVSDPYLYKGDYVLAVCALWKHIKSFTALCTLFRDENDKELNPAQVDWKKA FT QRAVSNFYDW" FT CDS 49..3612 FT /codon_start=1 FT /product="replicase-associated protein 1" FT /db_xref="GOA:L0JRL9" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:L0JRL9" FT /protein_id="AGB34169.1" FT /translation="MANGNFKLSQLLNVDEMSAEQRSHFFDLMLTKPDCEIGQMMQRVV FT VDKVDDMLRERKTKDPVIVHEVLSQKEQNKLMEIYPEFNIVFKDDKNMVHGFAAAERKL FT QALLLLDRVPALQEVDDIGGQWSFWVTRGEKRIHSCCPNLDIRDDQREISRQIFLTAIG FT DQARSGKRQMSENELWMYDQFRENITAPNAVRCNNTYQGCTCRGFSDGKKKGAQYAIAL FT HSLYDFKLKDLMATMVEKKTKVVHAAMLFAPESMLVDEGPLPSVDGYYMKKNGKIYFGF FT EKDPSFSYIHDWEEYKKYLLGKPVSYQGNVFYFEPCKREEIRCFFQSTGIAGVPRRSLS FT SQEYYRRIYISRWENMVVVPIFDLVESTRELVKKDLFVEKQFMDKCLDYIARLSDQQLT FT ISNVKSYLSSNNWVLFINGAAVKNKQSVDSRDLQLLAQTLLVKEQVARPVMRELREAIL FT TETKPITSLSDVLSLISRKLWKQFANKIAVGGFVGMVGTLIGLYPKKVLAWAKDTPNGS FT ELSYENTHKTKVIVFLSVVYAIGGITLMRRDIRDGLVKKLCDMFDIKRGAHVLDVENPC FT RYYEINDFFSSLYSAPESGETVLPDLSDVKAKSDKLLQQKKEIADEFLCAKFSNYSGSS FT ARTSPPSVVGSSRSGLGLLLEDSNVLTQARVGVSRKVNDEEIMEQFLGGLIDTEEEIDE FT IISAFLAECEKGETSGTKALCKPLTPPGFENVLPTVKPLSNKGKTVKSTDYFQVMGGER FT LPKRPIVSGDNSVDARREFLYYLDAERVAQNDEIMSLYRDYSRGVIRTGGQNYPHGLGV FT WDVEMKNWCIRPVVTEHAYVFQPDKRMNDWSGYLEVAVWERGMLVNDFAVERMSDYVIV FT CDQTYLCNNRLILDNLSALDLGPINCSFELVDGVPGCGKSTMIVNSANPCVDVVLSTGR FT AATDDLIERFASKGFPCKLKRRVTTVDSFLMHCVDGSLTGNVLHFDEALMAHAGMVYFC FT AQIARAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDVVTEKRETYRSPADVAAVLN FT KFYTGDVRTHNATANSMSVRKIVSKEQVSLKPGAQYITFLQSEKKELMNLLALRKVAAK FT VSTVHESQGETFKDVVLVRTKPTDDSIARGREYMIVALSRHTQSLVYETVKEDDVSKEI FT RESAALTKAALARFFVTETVL" FT gene 5174..5932 FT /gene="P1a" FT CDS 5174..5932 FT /codon_start=1 FT /gene="P1a" FT /product="movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:L0JUU7" FT /protein_id="AGB34170.1" FT /translation="MEDKSLAIFKKKTFEVSKFLNAAAIELFVDSRRKRPKYFHRRRET FT VLNHVGGKKSEHKLDVFDQRDYKMIKSYAFLKIVGVQLVVTSHLPADTPGFIQIDLLDS FT RLTEKRKKGKTIQRFKARACDNCSVAQYKVEYSISTQENVLDVWKVGCISEGVPVCDGT FT YPFSIEVSLIWVATDSTRRLNVEELNSSDYIEGDFTDQEVFGEFISLKQVEMKTIEAKY FT DGPYRPATTRPESLLSSEDVKGASKKKNSS" FT CDS 5957..6382 FT /codon_start=1 FT /product="16K protein" FT /note="silencing suppressor" FT /db_xref="InterPro:IPR007968" FT /db_xref="UniProtKB/TrEMBL:L0GCV5" FT /protein_id="AGB34171.1" FT /translation="MTCVLKGCVNEVTVLGHETCSIGHANKLRKQVADMVGVTRRCAEN FT NCGWFVCIIINDFTFDVYNCCGRSHLEKCRKRVEARNREIWKQIERIRAEKMFAAVKKS FT HNSKPSKKKFKERKEFGTPKRFLRDDVPFGIDQLFAF" XX SQ Sequence 6636 BP; 1941 A; 1104 C; 1708 G; 1883 T; 0 other; gtgcctaaaa ccttttcttt gattccttgt aaagtttata taaatacaat ggcgaacggt 60 aacttcaagt tgtctcaatt gcttaatgtg gacgagatgt ctgctgagca gaggagtcac 120 ttctttgact tgatgctgac taagcctgat tgcgagatcg ggcaaatgat gcaaagagtt 180 gttgttgata aagtcgatga catgcttaga gaaagaaaga ctaaagatcc agtgattgtt 240 catgaggttc tttcgcagaa agaacagaac aaattaatgg aaatttatcc tgaattcaat 300 atcgtgttca aagacgacaa aaacatggtt catgggtttg cagctgcaga acgaaaacta 360 caagctttat tgcttttaga tagggttcct gctttgcaag aggttgatga cattggtggt 420 caatggtcgt tttgggtcac tagaggtgag aagaggattc attcctgttg tccaaatcta 480 gatattcgtg acgatcagag agaaatttct cggcaaatat ttctaactgc aattggcgat 540 caggccagaa gcggtaagag gcagatgtcg gagaacgagc tgtggatgta cgatcagttc 600 cgcgagaata ttactgcacc taacgctgtt agatgtaata atacatatca aggttgtaca 660 tgtagaggat tttctgacgg taagaagaaa ggtgcgcagt acgctattgc tttacatagt 720 ttgtatgact tcaagttgaa agacttgatg gctacaatgg ttgagaaaaa gacaaaagta 780 gtgcatgctg ctatgctttt cgctcctgag agtatgttag tggacgaagg tccattacct 840 tctgttgatg gttactacat gaaaaagaac gggaagatct acttcggttt cgaaaaagat 900 ccttcgtttt cttatattca tgattgggaa gagtacaaga aatatctact gggaaagcca 960 gtgagttacc aagggaacgt attttacttc gaaccgtgca agagagagga gatacgatgc 1020 ttttttcaat ctacaggaat agctggagtt cccaggcggt ctctttcatc acaagagtat 1080 taccgaagaa tatatatcag tagatgggaa aacatggttg ttgtcccgat tttcgatctg 1140 gtcgaatcaa cgcgagagtt ggttaagaaa gacctgtttg tggagaagca gttcatggac 1200 aagtgtttgg attacatagc taggttgtct gaccagcagt taaccataag caatgttaag 1260 tcatacttga gttcaaataa ctgggtctta ttcataaacg gggcggccgt gaagaacaag 1320 caaagtgtag attctcgaga tttacagttg ttggctcaaa ctttgctagt gaaggaacaa 1380 gtagcgagac ctgtcatgag ggagttgcgt gaggcaattc tgactgagac gaaaccgatt 1440 acgtcattgt ctgacgtact aagtctaatc tcaagaaaac tgtggaaaca gttcgctaac 1500 aagattgcag tcggcggatt cgtcggtatg gtcggtacat taattggatt gtatccgaag 1560 aaggtgttgg cctgggcgaa ggacacgcca aacggttcag aactaagtta cgagaacacg 1620 cacaagacca aggtgatagt atttctgagt gttgtgtacg ccattggagg gatcacgctt 1680 atgcgtcgag acatccgaga tggactggtg aaaaaactgt gtgatatgtt tgacatcaaa 1740 cggggggccc atgtcttaga cgttgagaat ccatgccgct attatgaaat caatgatttc 1800 tttagcagtc tgtattcggc tcctgagtcc ggtgagaccg ttctgcctga cctatccgat 1860 gtaaaagcta agtctgataa gctactgcaa cagaagaagg aaattgctga tgagtttctc 1920 tgtgcaaaat tctctaacta ttctggcagt tcggcgagaa cttccccacc gtcggtggtc 1980 ggttcatctc gaagtggact gggtttgctg ttggaagaca gtaacgttct aacccaagct 2040 agagttggag tttcaagaaa ggtgaacgat gaggagatca tggagcagtt tctaggtggt 2100 cttattgaca ctgaagaaga gattgacgag attatttcag cttttttggc tgaatgtgaa 2160 aaaggggaaa caagcggtac aaaagcgttg tgtaagcctc tgacaccacc agggtttgag 2220 aatgtgttac caactgtcaa acctttgtcc aacaaaggta aaacggtcaa gagtactgat 2280 tacttccaag tgatgggagg tgagaggttg ccaaaaagac cgattgtcag cggagacaat 2340 tctgtggatg ctagaaggga gttcttgtac tacttggatg cagaaagagt tgctcaaaac 2400 gatgaaatta tgtctctgta tcgtgactat tcaagaggag ttattcgaac aggaggtcag 2460 aactatccac acggactggg agtgtgggac gtggagatga agaactggtg catacgtcca 2520 gtggtcactg aacatgctta tgtgttccaa ccagacaaac gtatgaatga ctggtcggga 2580 tatttagaag tggccgtctg ggaacgtggt atgttggtca acgacttcgc ggtcgaacga 2640 atgagtgatt atgtcatagt gtgcgatcag acttatcttt gcaataacag gttgatcttg 2700 gacaatttaa gtgccctgga tctaggacca atcaactgtt cttttgaatt agttgatggt 2760 gtacctggtt gtggtaagtc gacaatgatt gtcaactcag ctaatccttg tgtcgatgtg 2820 gttctttcta ctggaagagc ggcaaccgac gacctgatcg agagatttgc gagcaaaggt 2880 tttccatgta agttaaagcg gagagtgacg acggtagact cttttttgat gcattgtgtt 2940 gatggttctt taaccggaaa cgtgttgcat ttcgatgaag ctctcatggc tcatgctggt 3000 atggtgtact tttgtgctca aattgctaga gcaaaaagat gtatctgtca aggggatcaa 3060 aatcaaattt ctttcaaacc tagagtgtct caagttgact tgaggttctc gagtttagtt 3120 ggaaaatttg acgttgttac tgaaaaaaga gagacgtaca gaagtccggc cgatgtggcc 3180 gcggtactga acaagttcta cactggagat gtcagaacac ataacgcaac tgctaattcg 3240 atgtcagtga ggaagattgt gtcgaaggaa caggtttctt tgaaacctgg tgcccaatac 3300 ataactttcc ttcagtctga gaagaaggag ttgatgaatc tgttggcatt gaggaaagtg 3360 gcggctaagg tgagcacagt gcacgagtcc caaggagaaa cgttcaaaga tgtagtccta 3420 gttaggacaa aacccacgga tgactcaatt gctagagggc gtgaatatat gattgtggca 3480 ctgtcgcgtc acacacagtc acttgtgtac gagacagtaa aggaagatga cgtgagcaaa 3540 gaaatcagag aaagtgctgc gcttacaaag gcagctttgg caagattttt cgtcacagaa 3600 accgtcttat gacggtttcg gtctaggttt gatgtcttca gacatcatga agggccttgc 3660 gctgttccag attcacgtac gattacggac ttggaaatgt ggtacgacgc tttgtttcct 3720 ggaaactcat tgagagactc aggcctagac gggtatctgg tggcaacgac tgactgcaat 3780 ttgcggttag acaatgttac aatcaagagt ggaaactgga aagacaagtt tgctgaaaat 3840 gaaacgtttc tgaaaccggt tattcgtact gcgatgcctg ataagaggaa gactactcag 3900 ttggagagtt tgttggcatt gcaaaaaagg aaccaagcag cacctgatct acaagagaat 3960 gtgcatgcaa cagttctgat cgaagagacg atgaagaagc tgagatctgt tgtctacgat 4020 gtagggaaga ttcgggctga tcctattgtt aacagggctc aaatggagag atggtggcgg 4080 aaccaaagta cggcagttca ggctaaggtg gtagcagacg tgcgagagtt acatgagata 4140 gactattcgt cttacatgta tatgatcaag tctgatgtga aacctaagac tgatttaaca 4200 cctcaatttg aatattcggc tttgcaaact gttgtgtatc atgagaagtt gattaactcg 4260 ctgttcggtc caattttcaa agagatcaat gaacgcaagt tggatgctat gcaaccacac 4320 tttgtgttca acacaaggat gacgtcgagt gacttaaatg atcgagtgaa attcttaaac 4380 acagaagcgg cttacgactt cgtcgagata gacatgtcta aattcgacaa gtcggcaaat 4440 cgcttccatt tacagttgca gttggagatt tacaggctgt tcgggttaga tgagtgggcg 4500 gctttcctct gggaggtgtc gcacacccaa actactgtga gagacattca gaacggcatg 4560 atggcacata tttggtacca acaaaaaagt ggagatgctg atacttataa cgcaaattca 4620 gtcaggacag agtgtgcgct tctgtctgag ttaccaaagg agaaagcagt tatggttaca 4680 tatggtgggg acgattcgtt gattgcgttt cctagaggga cgcaattcgt cgacccgtgt 4740 ccaaagttgg taggcaagtg gaattttgag tgtaagatat ttaagtatga cgtcccaatg 4800 tttcatggga agtttttaca gaagacgtcg tcatgttacg agttcgtgcc agatccggtt 4860 aaagttctga tgaaattggg gaagaagagc ataaaggatg tgctacactt agttgcgatt 4920 tacatctcac tgaatgattc caatagggct cttggaaatt acatggtagt gtccaaactt 4980 tctgagtttg tttcagaccc gtatttgtac aagggtgatt atgttcttgc ggtgtgtgcg 5040 ttatggaagc atattaagag ttttacagct ttgtgtacat tattccgaga cgaaaacgat 5100 aaggaattga acccagctca ggttgattgg aagaaggcac aaagggctgt gtcaaatttt 5160 tacgattggt gagatggaag acaagtcatt ggctattttt aagaagaaga cttttgaagt 5220 ttcgaagttt ttgaacgcag ctgccattga actgtttgtg gatagtagga gaaagagacc 5280 gaaatacttt catagaagaa gagaaactgt cctaaatcat gttggtggaa agaagagtga 5340 acataagtta gacgtttttg accaaaggga ctacaaaatg attaaatctt atgcgttttt 5400 gaagatagta ggtgtgcaac ttgttgttac atcacatcta cctgcagaca cgcctgggtt 5460 tattcaaatc gatctgttgg attcgagact tactgagaaa agaaagaaag ggaagactat 5520 tcagagattc aaagctcgag cttgcgataa ttgttcagtt gcgcagtaca aagtggaata 5580 cagtatttct acacaagaga atgtactcga tgtctggaag gtgggttgta tttctgaggg 5640 cgttccggtc tgtgacggta catacccttt cagtattgaa gtgtcgctca tttgggttgc 5700 tactgattcg actaggcgtc ttaacgtgga agaactgaac agttcagact acatcgaagg 5760 cgattttacc gatcaggagg ttttcggtga gttcatatct ttgaaacaag ttgagatgaa 5820 gacgattgag gcgaagtatg atggtcctta cagaccagct actactagac cagaatcatt 5880 gttgtcaagt gaagatgtta agggagcgtc taaaaagaaa aactcgtctt aatgcataaa 5940 gaaatttatt gtcaatatga cgtgtgtact caagggttgt gtgaatgaag tcactgttct 6000 tggtcacgag acgtgtagta tcggtcatgc taacaagttg cgaaagcaag ttgctgacat 6060 ggttggtgtc acacgtaggt gtgcggaaaa taattgtgga tggtttgtct gtattattat 6120 taacgatttt acttttgatg tgtataattg ttgtggtcgt agtcaccttg aaaagtgtcg 6180 taaacgtgtt gaagcgagaa atcgagaaat ctggaaacag attgaacgga ttcgagctga 6240 aaagatgttt gctgcggtta aaaagtctca taattcgaaa ccctctaaga agaaattcaa 6300 ggagagaaaa gagtttggga caccaaaaag atttttaaga gatgatgttc ctttcggaat 6360 tgatcaactg tttgcttttt gattttattt taaattgtta tctgtttctg tgtatagact 6420 gtttgagatt ggcgtttggc cgactcattg tcttaccata ggggaacgga ctttgtttgt 6480 gttgttattt tatttgtatt ttattaaaat tctcaatgat ctgaaaaggc tttattgcta 6540 agagattatt ggggggtgag taagtacttt taaagtgatg atggttacaa aggcaaaagg 6600 ggtaaaaccc ctcgcctacg taagctttat tacgcc 6636 //